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  Home > Genomes > Superfamily assignments for Thermofilum pendens Hrk 5


Thermofilum pendens Hrk 5 superfamily assignments

Taxonomy
Taxonomy browser entry

Archaea; TACK group; Crenarchaeota; Thermoprotei; Thermoproteales; Thermofilaceae; Thermofilum; Thermofilum pendens; Thermofilum pendens Hrk 5

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Fasta format sequences
Domain assignments

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Assignment statistics

Sequences: 1878 total
1213 (65 %) with assignment
290 average length
59 % amino acid coverage
Domains: 1568 total
449 unique superfamilies
211 unique families
267 average length
3.5 average superfamily size
71 % formed by duplication
Domain combinations: 203 domain pairs
586 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies
173 159 30 8 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
54 54 17 1 SCOP 46785 "Winged helix" DNA-binding domain
39 34 5 1 SCOP 161098 MetI-like
29 29 15 8 SCOP 51735 NAD(P)-binding Rossmann-fold domains
29 28 6 4 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
24 24 4 0 SCOP 81301 Nucleotidyltransferase
23 22 7 1 SCOP 53850 Periplasmic binding protein-like II
23 23 4 1 SCOP 102114 Radical SAM enzymes
22 22 13 2 SCOP 50249 Nucleic acid-binding proteins
22 21 8 0 SCOP 54862 4Fe-4S ferredoxins
18 18 2 0 SCOP 103473 MFS general substrate transporter
17 17 3 1 SCOP 88723 PIN domain-like
16 15 6 0 SCOP 51905 FAD/NAD(P)-binding domain
15 15 3 0 SCOP 53448 Nucleotide-diphospho-sugar transferases
15 15 4 2 SCOP 56281 Metallo-hydrolase/oxidoreductase
15 15 2 1 SCOP 81593 Nucleotidyltransferase substrate binding subunit/domain
14 14 9 2 SCOP 52374 Nucleotidylyl transferase
14 9 6 1 SCOP 53067 Actin-like ATPase domain
14 14 1 1 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
13 13 11 2 SCOP 55681 Class II aaRS and biotin synthetases
12 11 6 1 SCOP 52833 Thioredoxin-like
12 12 3 1 SCOP 56784 HAD-like
11 11 8 2 SCOP 50447 Translation proteins
10 10 3 1 SCOP 53271 PRTase-like
10 9 4 1 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
10 10 5 1 SCOP 52402 Adenine nucleotide alpha hydrolases-like
10 10 7 3 SCOP 54211 Ribosomal protein S5 domain 2-like
9 9 4 1 SCOP 56300 Metallo-dependent phosphatases
9 9 7 2 SCOP 51445 (Trans)glycosidases
8 8 2 0 SCOP 89447 AbrB/MazE/MraZ-like
8 8 1 3 SCOP 53383 PLP-dependent transferases
8 8 3 0 SCOP 52980 Restriction endonuclease-like
8 8 1 0 SCOP 50331 MOP-like
7 7 5 3 SCOP 51556 Metallo-dependent hydrolases
7 7 4 2 SCOP 75217 alpha/beta knot
7 7 2 3 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
7 7 3 1 SCOP 109604 HD-domain/PDEase-like
7 7 3 0 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
7 4 4 0 SCOP 54631 CBS-domain pair
7 7 2 0 SCOP 54909 Dimeric alpha+beta barrel
6 6 2 1 SCOP 51569 Aldolase
6 6 1 0 SCOP 57829 Zn-binding ribosomal proteins
6 4 3 0 SCOP 54197 HIT-like
6 6 4 2 SCOP 50104 Translation proteins SH3-like domain
6 6 3 1 SCOP 100950 NagB/RpiA/CoA transferase-like
6 6 4 1 SCOP 53187 Zn-dependent exopeptidases
6 6 4 1 SCOP 88713 Glycoside hydrolase/deacetylase
6 6 5 0 SCOP 47413 lambda repressor-like DNA-binding domains
6 6 3 0 SCOP 50692 ADC-like
6 6 6 0 SCOP 88697 PUA domain-like
6 6 5 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
6 5 3 0 SCOP 49464 Carboxypeptidase regulatory domain-like
6 4 4 1 SCOP 52210 Succinyl-CoA synthetase domains
6 6 2 2 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
6 2 2 0 SCOP 53738 Phosphoglucomutase, first 3 domains
5 5 5 1 SCOP 56059 Glutathione synthetase ATP-binding domain-like
5 5 1 1 SCOP 53167 Purine and uridine phosphorylases
5 5 3 0 SCOP 56112 Protein kinase-like (PK-like)
5 5 2 2 SCOP 53697 SIS domain
5 5 2 0 SCOP 64182 DHH phosphoesterases
5 5 3 1 SCOP 47240 Ferritin-like
5 5 2 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
5 5 5 2 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
5 5 3 1 SCOP 51395 FMN-linked oxidoreductases
5 5 3 0 SCOP 50475 FMN-binding split barrel
5 5 3 0 SCOP 54001 Cysteine proteinases
5 5 3 1 SCOP 53639 AraD/HMP-PK domain-like
5 5 4 1 SCOP 52954 Class II aaRS ABD-related
5 5 4 0 SCOP 57783 Zinc beta-ribbon
5 5 2 0 SCOP 53323 Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
5 5 2 0 SCOP 58104 Methyl-accepting chemotaxis protein (MCP) signaling domain
5 5 3 0 SCOP 52922 TK C-terminal domain-like
4 4 4 1 SCOP 52317 Class I glutamine amidotransferase-like
4 4 2 2 SCOP 53613 Ribokinase-like
4 4 1 0 SCOP 51658 Xylose isomerase-like
4 4 2 1 SCOP 111283 Putative modulator of DNA gyrase, PmbA/TldD
4 4 3 0 SCOP 48150 DNA-glycosylase
4 4 2 2 SCOP 56770 HydA/Nqo6-like
4 4 1 0 SCOP 54285 MoaD/ThiS
4 3 3 1 SCOP 52096 ClpP/crotonase
4 4 3 0 SCOP 50182 Sm-like ribonucleoproteins
4 4 3 1 SCOP 55315 L30e-like
4 4 1 1 SCOP 52283 Formate/glycerate dehydrogenase catalytic domain-like
4 4 3 0 SCOP 47598 Ribbon-helix-helix
4 4 3 2 SCOP 56762 HydB/Nqo4-like
4 4 4 0 SCOP 53218 Molybdenum cofactor biosynthesis proteins
4 3 3 0 SCOP 51338 Composite domain of metallo-dependent hydrolases
4 4 3 0 SCOP 55021 ACT-like
4 4 2 0 SCOP 50037 C-terminal domain of transcriptional repressors
4 4 4 1 SCOP 143437 THUMP domain-like
4 4 2 0 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
4 4 2 1 SCOP 53706 Formate dehydrogenase/DMSO reductase, domains 1-3
4 4 2 1 SCOP 56042 PurM C-terminal domain-like
4 4 1 1 SCOP 48310 Aldehyde ferredoxin oxidoreductase, C-terminal domains
4 4 2 0 SCOP 55326 PurM N-terminal domain-like
4 2 2 0 SCOP 160240 Cation efflux protein cytoplasmic domain-like
4 2 1 0 SCOP 47954 Cyclin-like
4 4 1 1 SCOP 56228 Aldehyde ferredoxin oxidoreductase, N-terminal domain
4 4 1 0 SCOP 159071 TrmB C-terminal domain-like
3 3 2 1 SCOP 52141 Uracil-DNA glycosylase-like
3 3 1 1 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
3 3 1 1 SCOP 55282 RL5-like
3 3 2 1 SCOP 53137 Translational machinery components
3 3 3 1 SCOP 55120 Pseudouridine synthase
3 3 3 2 SCOP 53098 Ribonuclease H-like
3 3 1 1 SCOP 51695 PLC-like phosphodiesterases
3 3 3 0 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
3 3 2 0 SCOP 109755 PhoU-like
3 3 1 2 SCOP 53633 Carbamate kinase-like
3 3 1 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
3 3 2 0 SCOP 51161 Trimeric LpxA-like enzymes
3 3 3 0 SCOP 54292 2Fe-2S ferredoxin-like
3 3 1 0 SCOP 55811 Nudix
3 3 2 0 SCOP 49764 HSP20-like chaperones
3 2 2 0 SCOP 55469 FMN-dependent nitroreductase-like
3 2 2 0 SCOP 81296 E set domains
3 1 1 1 SCOP 48403 Ankyrin repeat
3 3 1 0 SCOP 50630 Acid proteases
3 3 3 0 SCOP 74650 Galactose mutarotase-like
3 3 1 0 SCOP 57997 Tropomyosin
3 3 1 0 SCOP 101960 Stabilizer of iron transporter SufD
3 3 2 0 SCOP 143243 Nqo5-like
3 3 2 0 SCOP 53822 Periplasmic binding protein-like I
3 3 2 1 SCOP 117396 TM1631-like
3 2 2 0 SCOP 103481 Multidrug resistance efflux transporter EmrE
3 3 3 0 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
3 2 2 0 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
3 3 1 0 SCOP 159659 Cgl1923-like
3 3 1 2 SCOP 51604 Enolase C-terminal domain-like
3 3 3 0 SCOP 49452 Starch-binding domain-like
3 3 1 0 SCOP 82704 AlbA-like
3 3 2 0 SCOP 55186 ThrRS/AlaRS common domain
3 3 2 0 SCOP 46548 alpha-helical ferredoxin
3 3 2 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
3 2 2 0 SCOP 54980 EF-G C-terminal domain-like
3 3 2 0 SCOP 81665 Calcium ATPase, transmembrane domain M
3 2 2 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
3 3 1 1 SCOP 54826 Enolase N-terminal domain-like
3 3 2 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
3 3 2 0 SCOP 81653 Calcium ATPase, transduction domain A
2 2 1 0 SCOP 53474 alpha/beta-Hydrolases
2 2 1 1 SCOP 51366 Ribulose-phoshate binding barrel
2 2 1 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
2 2 1 1 SCOP 52080 Ribosomal proteins L15p and L18e
2 2 2 1 SCOP 55920 Creatinase/aminopeptidase
2 2 2 0 SCOP 46946 S13-like H2TH domain
2 2 2 0 SCOP 110324 Ribosomal L27 protein-like
2 2 2 0 SCOP 55174 Alpha-L RNA-binding motif
2 2 1 0 SCOP 50129 GroES-like
2 2 2 1 SCOP 55821 YrdC/RibB
2 2 2 0 SCOP 48452 TPR-like
2 2 1 1 SCOP 81345 ABC transporter involved in vitamin B12 uptake, BtuC
2 2 1 0 SCOP 48576 Terpenoid synthases
2 2 1 0 SCOP 75169 DsrEFH-like
2 2 1 1 SCOP 56796 Dehydroquinate synthase-like
2 2 1 1 SCOP 51430 NAD(P)-linked oxidoreductase
2 2 1 1 SCOP 56801 Acetyl-CoA synthetase-like
2 2 2 1 SCOP 56672 DNA/RNA polymerases
2 2 2 1 SCOP 50891 Cyclophilin-like
2 2 1 0 SCOP 46579 Prefoldin
2 2 1 0 SCOP 53649 Alkaline phosphatase-like
2 2 1 0 SCOP 63393 RNA polymerase subunits
2 2 1 0 SCOP 56317 Carbon-nitrogen hydrolase
2 2 2 0 SCOP 51306 LexA/Signal peptidase
2 2 1 1 SCOP 51182 RmlC-like cupins
2 2 2 0 SCOP 49899 Concanavalin A-like lectins/glucanases
2 2 1 1 SCOP 52972 ITPase-like
2 2 1 0 SCOP 110849 ParB/Sulfiredoxin
2 2 1 0 SCOP 111126 Ligand-binding domain in the NO signalling and Golgi transport
2 2 1 0 SCOP 81343 Fumarate reductase respiratory complex transmembrane subunits
2 2 1 0 SCOP 53032 tRNA-intron endonuclease catalytic domain-like
2 2 2 0 SCOP 55257 RBP11-like subunits of RNA polymerase
2 2 1 2 SCOP 52768 Arginase/deacetylase
2 2 2 2 SCOP 55931 Glutamine synthetase/guanido kinase
2 2 1 0 SCOP 144020 FdhE-like
2 2 1 0 SCOP 51998 PFL-like glycyl radical enzymes
2 2 2 0 SCOP 58100 Bacterial hemolysins
2 2 1 1 SCOP 53807 "Helical backbone" metal receptor
2 2 1 1 SCOP 56349 DNA breaking-rejoining enzymes
2 2 2 0 SCOP 89550 PHP domain-like
2 2 1 0 SCOP 53300 vWA-like
2 2 1 1 SCOP 64167 SurE-like
2 2 2 0 SCOP 161111 Cation efflux protein transmembrane domain-like
2 2 1 0 SCOP 102215 Creatininase
2 2 2 0 SCOP 54975 Acylphosphatase/BLUF domain-like
2 2 1 1 SCOP 56747 Prim-pol domain
2 2 2 0 SCOP 57802 Rubredoxin-like
2 2 1 0 SCOP 52242 Cobalamin (vitamin B12)-binding domain
2 2 1 0 SCOP 103196 Roadblock/LC7 domain
2 2 1 0 SCOP 53163 HybD-like
2 2 1 0 SCOP 53901 Thiolase-like
2 2 2 0 SCOP 52309 N-(deoxy)ribosyltransferase-like
2 2 1 0 SCOP 53146 Nitrogenase accessory factor-like
2 2 1 1 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
2 2 2 0 SCOP 160980 SSO1389-like
2 2 2 0 SCOP 63867 MoeA C-terminal domain-like
2 2 2 0 SCOP 55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
2 2 2 1 SCOP 52743 Subtilisin-like
2 2 1 1 SCOP 48592 GroEL equatorial domain-like
2 2 2 0 SCOP 50156 PDZ domain-like
2 1 1 0 SCOP 55979 DNA clamp
2 2 2 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
2 2 2 1 SCOP 51690 Nicotinate/Quinolinate PRTase C-terminal domain-like
2 2 2 0 SCOP 52009 Phosphohistidine domain
2 2 1 0 SCOP 51971 Nucleotide-binding domain
2 2 1 0 SCOP 90257 Myosin rod fragments
2 2 2 0 SCOP 51011 Glycosyl hydrolase domain
2 2 1 1 SCOP 53671 Aspartate/ornithine carbamoyltransferase
2 2 1 0 SCOP 143968 UbiD C-terminal domain-like
2 2 1 1 SCOP 52029 GroEL apical domain-like
2 2 1 0 SCOP 55060 GHMP Kinase, C-terminal domain
2 2 2 0 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
2 2 1 0 SCOP 160964 MalF N-terminal region-like
2 2 2 1 SCOP 63882 MoeA N-terminal region -like
2 1 1 1 SCOP 55945 TATA-box binding protein-like
2 2 2 0 SCOP 47794 Rad51 N-terminal domain-like
2 1 1 0 SCOP 56053 Ribosomal protein L6
2 2 2 0 SCOP 117892 Band 7/SPFH domain
2 2 1 0 SCOP 53743 FucI/AraA N-terminal and middle domains
2 2 1 0 SCOP 55031 Bacterial exopeptidase dimerisation domain
2 2 1 1 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
2 2 1 0 SCOP 81271 TGS-like
2 2 2 1 SCOP 55261 GAD domain-like
2 2 1 1 SCOP 117018 ATP-dependent DNA ligase DNA-binding domain
2 2 1 0 SCOP 55666 Ribonuclease PH domain 2-like
2 2 1 0 SCOP 54849 GroEL-intermediate domain like
2 2 1 0 SCOP 54585 Cdc48 domain 2-like
2 2 1 0 SCOP 47644 Methionine synthase domain
2 2 1 1 SCOP 101821 Aminopeptidase/glucanase lid domain
2 2 1 0 SCOP 55267 tRNA-intron endonuclease N-terminal domain-like
1 1 1 0 SCOP 55594 HPr-like
1 1 1 0 SCOP 53927 Cytidine deaminase-like
1 1 1 1 SCOP 53790 Tetrapyrrole methylase
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 0 SCOP 111331 NAD kinase/diacylglycerol kinase-like
1 1 1 0 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54570 Ribosomal protein S19
1 1 1 0 SCOP 54843 Ribosomal protein L22
1 1 1 0 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 1 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 0 SCOP 55831 Thymidylate synthase/dCMP hydroxymethylase
1 1 1 0 SCOP 52218 Flavoproteins
1 1 1 1 SCOP 53748 Phosphoglycerate kinase
1 1 1 1 SCOP 50324 Inorganic pyrophosphatase
1 1 1 0 SCOP 160369 Ribosomal protein L10-like
1 1 1 1 SCOP 89623 Ribose/Galactose isomerase RpiB/AlsB
1 1 1 0 SCOP 81333 F1F0 ATP synthase subunit C
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 0 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 0 SCOP 52821 Rhodanese/Cell cycle control phosphatase
1 1 1 0 SCOP 51283 dUTPase-like
1 1 1 1 SCOP 51713 tRNA-guanine transglycosylase
1 1 1 0 SCOP 50715 Ribosomal protein L25-like
1 1 1 1 SCOP 51412 Inosine monophosphate dehydrogenase (IMPDH)
1 1 1 1 SCOP 56276 S-adenosylmethionine decarboxylase
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 1 SCOP 64005 Undecaprenyl diphosphate synthase
1 1 1 0 SCOP 54637 Thioesterase/thiol ester dehydrase-isomerase
1 1 1 0 SCOP 56655 Carbohydrate phosphatase
1 1 1 1 SCOP 55205 EPT/RTPC-like
1 1 1 1 SCOP 55298 YjgF-like
1 1 1 0 SCOP 64307 SirA-like
1 1 1 0 SCOP 55129 Ribosomal protein L30p/L7e
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 0 SCOP 48371 ARM repeat
1 1 1 0 SCOP 47113 Histone-fold
1 1 1 1 SCOP 48140 Ribosomal protein L19 (L19e)
1 1 1 0 SCOP 52042 Ribosomal protein L32e
1 1 1 1 SCOP 52949 Macro domain-like
1 1 1 0 SCOP 54575 Ribosomal protein L31e
1 1 1 0 SCOP 52799 (Phosphotyrosine protein) phosphatases II
1 1 1 0 SCOP 51726 UROD/MetE-like
1 1 1 0 SCOP 103456 Preprotein translocase SecE subunit
1 1 1 0 SCOP 48317 Acid phosphatase/Vanadium-dependent haloperoxidase
1 1 1 0 SCOP 54534 FKBP-like
1 1 1 0 SCOP 52499 Isochorismatase-like hydrolases
1 1 1 1 SCOP 111278 SSo0622-like
1 1 1 0 SCOP 159468 AtpF-like
1 1 1 0 SCOP 55144 LigT-like
1 1 1 1 SCOP 69572 Activating enzymes of the ubiquitin-like proteins
1 1 1 0 SCOP 144210 Nop10-like SnoRNP
1 1 1 0 SCOP 89895 FYSH domain
1 1 1 1 SCOP 53774 Glutaminase/Asparaginase
1 1 1 0 SCOP 47819 HRDC-like
1 1 1 0 SCOP 48662 Ribosomal protein L39e
1 1 1 1 SCOP 48208 Six-hairpin glycosidases
1 1 1 0 SCOP 49777 PEBP-like
1 1 1 0 SCOP 103486 V-type ATP synthase subunit C
1 1 1 0 SCOP 143870 PF0523-like
1 1 1 1 SCOP 64153 YjeF N-terminal domain-like
1 1 1 0 SCOP 55159 eIF1-like
1 1 1 0 SCOP 55008 HMA, heavy metal-associated domain
1 1 1 0 SCOP 46924 RNA polymerase subunit RPB10
1 1 1 1 SCOP 143447 AMMECR1-like
1 1 1 1 SCOP 55909 Pentein
1 1 1 0 SCOP 63562 RPB6/omega subunit-like
1 1 1 0 SCOP 81342 Transmembrane di-heme cytochromes
1 1 1 0 SCOP 46458 Globin-like
1 1 1 0 SCOP 144091 Rhomboid-like
1 1 1 0 SCOP 49478 Cna protein B-type domain
1 1 1 1 SCOP 111038 YjbQ-like
1 1 1 1 SCOP 55040 Molybdenum cofactor biosynthesis protein C, MoaC
1 1 1 0 SCOP 102405 MCP/YpsA-like
1 1 1 1 SCOP 53795 PEP carboxykinase-like
1 1 1 0 SCOP 46955 Putative DNA-binding domain
1 1 1 1 SCOP 50494 Trypsin-like serine proteases
1 1 1 0 SCOP 118196 YaeB-like
1 1 1 0 SCOP 52016 LeuD/IlvD-like
1 1 1 1 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
1 1 1 0 SCOP 117916 Fe-S cluster assembly (FSCA) domain-like
1 1 1 0 SCOP 51230 Single hybrid motif
1 1 1 0 SCOP 103256 Hypothetical protein TM0160
1 1 1 0 SCOP 46767 Methylated DNA-protein cysteine methyltransferase, C-terminal domain
1 1 1 0 SCOP 101744 Rof/RNase P subunit-like
1 1 1 0 SCOP 117782 YbjQ-like
1 1 1 0 SCOP 55154 CYTH-like phosphatases
1 1 1 0 SCOP 54690 Molybdopterin synthase subunit MoaE
1 1 1 1 SCOP 52467 DHS-like NAD/FAD-binding domain
1 1 1 0 SCOP 50800 PK beta-barrel domain-like
1 1 1 1 SCOP 103365 Hypothetical protein PH1602
1 1 1 0 SCOP 69065 RNase III domain-like
1 1 1 0 SCOP 82689 Mechanosensitive channel protein MscS (YggB), C-terminal domain
1 1 1 0 SCOP 158997 Trm112p-like
1 1 1 1 SCOP 82544 GckA/TtuD-like
1 1 1 0 SCOP 53213 LigB-like
1 1 1 0 SCOP 50969 YVTN repeat-like/Quinoprotein amine dehydrogenase
1 1 1 0 SCOP 51004 C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
1 1 1 0 SCOP 89095 GatB/YqeY motif
1 1 1 0 SCOP 55826 YbaK/ProRS associated domain
1 1 1 1 SCOP 102588 LmbE-like
1 1 1 0 SCOP 159234 FomD-like
1 1 1 0 SCOP 143430 TTP0101/SSO1404-like
1 1 1 1 SCOP 53182 Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
1 1 1 0 SCOP 53062 PTS system fructose IIA component-like
1 1 1 0 SCOP 50486 FMT C-terminal domain-like
1 1 1 0 SCOP 64076 MTH938-like
1 1 1 0 SCOP 117070 LEA14-like
1 1 1 0 SCOP 159127 HupF/HypC-like
1 1 1 0 SCOP 56024 Phospholipase D/nuclease
1 1 1 0 SCOP 75471 YhbY-like
1 1 1 0 SCOP 103501 Respiratory nitrate reductase 1 gamma chain
1 1 1 0 SCOP 47781 RuvA domain 2-like
1 1 1 0 SCOP 56271 Pyruvoyl-dependent histidine and arginine decarboxylases
1 1 1 0 SCOP 75005 Arabinanase/levansucrase/invertase
1 1 1 1 SCOP 56726 DNA topoisomerase IV, alpha subunit
1 1 1 0 SCOP 102198 Putative cyclase
1 1 1 0 SCOP 46950 Double-stranded DNA-binding domain
1 1 1 0 SCOP 74784 Translin
1 1 1 0 SCOP 50346 PRC-barrel domain
1 1 1 1 SCOP 89124 Nop domain
1 1 1 1 SCOP 111321 AF1104-like
1 1 1 1 SCOP 111249 Sulfolobus fructose-1,6-bisphosphatase-like
1 1 1 0 SCOP 158436 Ta0600-like
1 1 1 1 SCOP 160975 AF1531-like
1 1 1 0 SCOP 49367 Superoxide reductase-like
1 1 1 0 SCOP 54984 eEF-1beta-like
1 1 1 0 SCOP 69819 MTH1598-like
1 1 1 0 SCOP 55287 RPB5-like RNA polymerase subunit
1 1 1 0 SCOP 116820 Rps17e-like
1 1 1 0 SCOP 160374 RplX-like
1 1 1 1 SCOP 102462 Peptidyl-tRNA hydrolase II
1 1 1 0 SCOP 158372 AF1782-like
1 1 1 0 SCOP 69695 SRP19
1 1 1 0 SCOP 110455 Toprim domain
1 1 1 1 SCOP 103165 Ta1353-like
1 1 1 0 SCOP 53092 Creatinase/prolidase N-terminal domain
1 1 1 0 SCOP 52343 Ferredoxin reductase-like, C-terminal NADP-linked domain
1 1 1 0 SCOP 46589 tRNA-binding arm
1 1 1 0 SCOP 143865 CorA soluble domain-like
1 1 1 1 SCOP 51246 Rudiment single hybrid motif
1 1 1 0 SCOP 55103 FAD-linked oxidases, C-terminal domain
1 1 1 0 SCOP 56176 FAD-binding/transporter-associated domain-like
1 1 1 0 SCOP 159713 Dhaf3308-like
1 1 1 0 SCOP 52728 PTS IIb component
1 1 1 0 SCOP 82114 Riboflavin kinase-like
1 1 1 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 0 SCOP 47077 T4 endonuclease V
1 1 1 0 SCOP 160991 CV3147-like
1 1 1 1 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
1 1 1 0 SCOP 158568 AF1862-like
1 1 1 0 SCOP 143555 FwdE-like
1 1 1 0 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 0 SCOP 48019 post-AAA+ oligomerization domain-like
1 1 1 0 SCOP 52935 PK C-terminal domain-like
1 1 1 0 SCOP 57903 FYVE/PHD zinc finger
1 1 1 1 SCOP 52440 PreATP-grasp domain
1 1 1 0 SCOP 68923 PEP carboxykinase N-terminal domain
1 1 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
1 1 1 0 SCOP 116726 TrkA C-terminal domain-like
1 1 1 1 SCOP 52418 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
1 1 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
1 1 1 0 SCOP 57825 Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
1 1 1 0 SCOP 81660 Metal cation-transporting ATPase, ATP-binding domain N
1 1 1 0 SCOP 52279 Beta-D-glucan exohydrolase, C-terminal domain
1 1 1 0 SCOP 63380 Riboflavin synthase domain-like
1 1 1 0 SCOP 63737 Leukotriene A4 hydrolase N-terminal domain
1 1 1 0 SCOP 141322 NfeD domain-like
1 1 1 1 SCOP 75098 Monomethylamine methyltransferase MtmB
1 1 1 0 SCOP 81631 PAP/OAS1 substrate-binding domain
1 1 1 0 SCOP 144083 Magnesium transport protein CorA, transmembrane region
1 1 1 0 SCOP 46934 UBA-like
1 1 1 0 SCOP 47648 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
1 1 1 1 SCOP 56327 LDH C-terminal domain-like
1 1 1 0 SCOP 75689 Zinc-binding domain of translation initiation factor 2 beta
1 1 1 0 SCOP 100966 Translation initiation factor 2 beta, aIF2beta, N-terminal domain
1 1 1 0 SCOP 54768 dsRNA-binding domain-like
1 1 1 0 SCOP 47831 Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
1 1 1 1 SCOP 158702 Sec63 N-terminal domain-like
1 1 1 0 SCOP 52413 UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
1 1 1 0 SCOP 55957 Phosphoglucomutase, C-terminal domain
1 1 1 0 SCOP 101852 Bacterial fluorinating enzyme, C-terminal domain
1 1 1 0 SCOP 54680 Pyrimidine nucleoside phosphorylase C-terminal domain
1 1 1 0 SCOP 54675 Nicotinate/Quinolinate PRTase N-terminal domain-like
1 1 1 0 SCOP 47446 Signal peptide-binding domain
1 1 1 0 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
1 1 1 1 SCOP 56542 Substrate-binding domain of HMG-CoA reductase
1 1 1 0 SCOP 102522 Bacterial fluorinating enzyme, N-terminal domain
1 1 1 0 SCOP 116742 eIF2alpha middle domain-like
1 1 1 1 SCOP 55481 N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
1 1 1 0 SCOP 52025 PA domain
1 1 1 0 SCOP 88798 N-terminal, heterodimerisation domain of RBP7 (RpoE)
1 1 1 0 SCOP 88688 Families 57/38 glycoside transferase middle domain
1 1 1 0 SCOP 54368 Glutamine synthetase, N-terminal domain
1 1 1 1 SCOP 51649 RuBisCo, C-terminal domain
1 1 1 1 SCOP 54966 RuBisCO, large subunit, small (N-terminal) domain
1 1 1 0 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 0 SCOP 110993 eIF-2-alpha, C-terminal domain
1 1 1 0 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
1 1 1 0 SCOP 160527 V-type ATPase subunit E-like
1 1 1 0 SCOP 159065 Dom34/Pelota N-terminal domain-like
1 1 1 0 SCOP 88802 Pre-PUA domain
1 1 1 1 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 55003 PAP/Archaeal CCA-adding enzyme, C-terminal domain
1 1 1 0 SCOP 64586 C-terminal domain of ProRS
1 1 1 1 SCOP 55035 NAD-binding domain of HMG-CoA reductase
1 1 1 0 SCOP 75445 D-ribose-5-phosphate isomerase (RpiA), lid domain
1 1 1 1 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 0 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 1 SCOP 54893 Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain
1 1 1 1 SCOP 109728 Hypothetical protein AF0491, middle domain
1 1 1 0 SCOP 141300 GatD N-terminal domain-like
1 1 1 0 SCOP 140914 PriB N-terminal domain-like
1 1 1 0 SCOP 57770 Methionyl-tRNA synthetase (MetRS), Zn-domain
1 1 1 0 SCOP 52913 RNA 3'-terminal phosphate cyclase, RPTC, insert domain

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The following superfamilies have one or more weak hits:

SCOP superfamily ABC transporter transmembrane region
SCOP superfamily YajQ-like
SCOP superfamily Mago nashi protein
SCOP superfamily Positive stranded ssRNA viruses
SCOP superfamily Multidrug efflux transporter AcrB transmembrane domain
SCOP superfamily Mechanosensitive channel protein MscS (YggB), transmembrane region
SCOP superfamily N-utilization substance G protein NusG, N-terminal domain
SCOP superfamily beta-sandwich domain of Sec23/24
SCOP superfamily Cytochrome c oxidase subunit III-like
SCOP superfamily Aquaporin-like
SCOP superfamily F1F0 ATP synthase subunit A
SCOP superfamily Voltage-gated potassium channels
SCOP superfamily Rad50 coiled-coil Zn hook
SCOP superfamily Amidase signature (AS) enzymes
SCOP superfamily Hypothetical protein MTH777 (MT0777)
SCOP superfamily Head and neck region of the ectodomain of NDV fusion glycoprotein
SCOP superfamily Glutamyl tRNA-reductase catalytic, N-terminal domain
SCOP superfamily Rho N-terminal domain-like
SCOP superfamily F1 ATPase inhibitor, IF1, C-terminal domain
SCOP superfamily LEM domain
SCOP superfamily LuxS/MPP-like metallohydrolase
SCOP superfamily Apolipoprotein A-I
SCOP superfamily Assembly domain of cartilage oligomeric matrix protein
SCOP superfamily ArfGap/RecO-like zinc finger
SCOP superfamily RING/U-box
SCOP superfamily TNF receptor-like
SCOP superfamily Prismane protein-like
SCOP superfamily Type II DNA topoisomerase
SCOP superfamily C-type lectin-like
SCOP superfamily PheT/TilS domain
SCOP superfamily Nitrite and sulphite reductase 4Fe-4S domain-like
SCOP superfamily FAD-linked reductases, C-terminal domain
SCOP superfamily Methylated DNA-protein cysteine methyltransferase domain
SCOP superfamily B12-dependent dehydatase associated subunit
SCOP superfamily Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
SCOP superfamily Thiamin phosphate synthase
SCOP superfamily Mss4-like
SCOP superfamily Pectin lyase-like
SCOP superfamily Quinoprotein alcohol dehydrogenase-like
SCOP superfamily ISP domain
SCOP superfamily Ecotin, trypsin inhibitor
SCOP superfamily Invasin/intimin cell-adhesion fragments
SCOP superfamily CBD9-like
SCOP superfamily L-aspartase-like
SCOP superfamily Lipovitellin-phosvitin complex, superhelical domain
SCOP superfamily lambda integrase-like, N-terminal domain
SCOP superfamily CO dehydrogenase ISP C-domain like
SCOP superfamily Homodimeric domain of signal transducing histidine kinase
SCOP superfamily Aspartate receptor, ligand-binding domain
SCOP superfamily Spectrin repeat
SCOP superfamily C-terminal effector domain of the bipartite response regulators
SCOP superfamily Homeodomain-like
SCOP superfamily YfgJ-like
SCOP superfamily Photosystem II antenna protein-like
SCOP superfamily Jann2411-like
SCOP superfamily Rnp2-like
SCOP superfamily AttH-like
SCOP superfamily YheA/YmcA-like
SCOP superfamily GINS helical bundle-like
SCOP superfamily occludin/ELL-like
SCOP superfamily HIT/MYND zinc finger-like
SCOP superfamily NOB1 zinc finger-like
SCOP superfamily RelB-like
SCOP superfamily FtsH protease domain-like
SCOP superfamily TM0693-like
SCOP superfamily EsxAB dimer-like
SCOP superfamily MW0975(SA0943)-like
SCOP superfamily YppE-like
SCOP superfamily Proton glutamate symport protein
SCOP superfamily MIT domain
SCOP superfamily Recombination protein RecR
SCOP superfamily Oligoxyloglucan reducing end-specific cellobiohydrolase
SCOP superfamily Triger factor/SurA peptide-binding domain-like
SCOP superfamily YgfY-like
SCOP superfamily BAR/IMD domain-like
SCOP superfamily Formin homology 2 domain (FH2 domain)
SCOP superfamily all-alpha NTP pyrophosphatases
SCOP superfamily Flavivirus capsid protein C
SCOP superfamily Docking domain B of the erythromycin polyketide synthase (DEBS)

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.