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  Home > Genomes > Family assignments for Pedobacter heparinus DSM 2366


Pedobacter heparinus DSM 2366 family assignments

Taxonomy
Taxonomy browser entry

Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter; Pedobacter heparinus; Pedobacter heparinus DSM 2366

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Fasta format sequences
Domain assignments

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Assignment statistics

Sequences: 4252 total
2986 (70 %) with assignment
375 average length
60 % amino acid coverage
Domains: 4483 total
676 unique superfamilies
480 unique families
321 average length
6.6 average superfamily size
85 % formed by duplication
Domain combinations: 480 domain pairs
1143 unique architectures

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Family assignments

Domains

Proteins

SCOP link

Families
25 25 SCOP 51751 Tyrosine-dependent oxidoreductases
25 24 SCOP 52686 ABC transporter ATPase domain-like
19 19 SCOP 53417 GABA-aminotransferase-like
18 12 SCOP 81268 Tandem AAA-ATPase domain
15 13 SCOP 81269 Extended AAA-ATPase domain
13 13 SCOP 109953 Glycosyl Hydrolase Family 88
12 6 SCOP 82867 Multidrug efflux transporter AcrB transmembrane domain
11 11 SCOP 53823 L-arabinose binding protein-like
10 10 SCOP 52375 Class I aminoacyl-tRNA synthetases (RS), catalytic domain
10 9 SCOP 52592 G proteins
10 10 SCOP 55682 Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
9 9 SCOP 51550 beta-N-acetylhexosaminidase catalytic domain
8 8 SCOP 53402 Cystathionine synthase-like
8 8 SCOP 53653 Arylsulfatase
8 8 SCOP 53687 Tryptophan synthase beta subunit-like PLP-dependent enzymes
8 5 SCOP 53902 Thiolase-related
7 7 SCOP 51570 Class I aldolase
7 7 SCOP 52318 Class I glutamine amidotransferases (GAT)
7 7 SCOP 53721 ALDH-like
6 6 SCOP 51446 Amylase, catalytic domain
6 3 SCOP 53068 Actin/HSP70
6 6 SCOP 53384 AAT-like
6 4 SCOP 89572 Biotin dependent carboxylase carboxyltransferase domain
6 6 SCOP 102079 Putative alpha-L-fucosidase, catalytic domain
5 5 SCOP 50006 Hyaluronate lyase-like, central domain
5 5 SCOP 50940 Sialidases (neuraminidases)
5 5 SCOP 51396 FMN-linked oxidoreductases
5 5 SCOP 51431 Aldo-keto reductases (NADP)
5 5 SCOP 51553 NagZ-like
5 5 SCOP 51868 6-phosphogluconate dehydrogenase-like, N-terminal domain
5 5 SCOP 51883 Aminoacid dehydrogenase-like, C-terminal domain
5 5 SCOP 52652 Nitrogenase iron protein-like
5 5 SCOP 52670 RecA protein-like (ATPase-domain)
5 5 SCOP 53851 Phosphate binding protein-like
5 4 SCOP 56067 BC ATP-binding domain-like
5 5 SCOP 56646 Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
5 5 SCOP 56802 Acetyl-CoA synthetase-like
5 5 SCOP 89108 Hypothetical protein YteR
5 5 SCOP 158775 SusD-like
4 3 SCOP 52441 BC N-terminal domain-like
4 2 SCOP 53089 Glycerol kinase
4 4 SCOP 53272 Phosphoribosyltransferases (PRTases)
4 4 SCOP 55348 GAPDH-like
4 4 SCOP 56955 Outer membrane efflux proteins (OEP)
4 4 SCOP 82261 N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain
4 4 SCOP 90124 ABC transporter transmembrane region
4 4 SCOP 111370 HlyD-like secretion proteins
4 4 SCOP 142721 PyrH-like
4 2 SCOP 143860 Polyphosphate kinase C-terminal domain
4 4 SCOP 159832 PBP transglycosylase domain-like
3 3 SCOP 47204 Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
3 3 SCOP 48234 Hyaluronate lyase-like catalytic, N-terminal domain
3 3 SCOP 50282 Cold shock DNA-binding domain-like
3 3 SCOP 50448 Elongation factors
3 3 SCOP 51367 Histidine biosynthesis enzymes
3 3 SCOP 51381 Tryptophan biosynthesis enzymes
3 3 SCOP 51800 Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
3 3 SCOP 51830 Formate/glycerate dehydrogenases, NAD-domain
3 3 SCOP 52103 Crotonase-like
3 3 SCOP 52541 Nucleotide and nucleoside kinases
3 3 SCOP 52744 Subtilases
3 3 SCOP 52778 CAT-like
3 3 SCOP 53204 Bacterial dinuclear zinc exopeptidases
3 3 SCOP 53224 Aminoacid dehydrogenases
3 3 SCOP 53329 Formyltransferase
3 3 SCOP 53914 Chalcone synthase-like
3 3 SCOP 54632 CBS-domain pair
3 3 SCOP 55879 DNA gyrase/MutL, N-terminal domain
3 3 SCOP 55921 Creatinase/aminopeptidase
3 1 SCOP 55974 S-adenosylmethionine synthetase
3 3 SCOP 56753 D-aminoacid aminotransferase-like PLP-dependent enzymes
3 3 SCOP 64089 BadF/BadG/BcrA/BcrD-like
3 3 SCOP 82785 Ohr/OsmC resistance proteins
3 3 SCOP 89734 L-sulfolactate dehydrogenase-like
3 3 SCOP 89800 Deoxycytidylate deaminase-like
3 3 SCOP 101340 HD domain
3 3 SCOP 110284 TM1225-like predicted glycosylases
2 2 SCOP 47241 Ferritin
2 2 SCOP 47253 Ribonucleotide reductase-like
2 2 SCOP 47324 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
2 2 SCOP 47918 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 SCOP 48174 Cryptochrome/photolyase FAD-binding domain
2 2 SCOP 48180 Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
2 2 SCOP 48222 N-acylglucosamine (NAG) epimerase
2 2 SCOP 48558 L-aspartase/fumarase
2 2 SCOP 50325 Inorganic pyrophosphatase
2 2 SCOP 50678 ValRS/IleRS/LeuRS editing domain
2 2 SCOP 51147 Pectin methylesterase
2 2 SCOP 51183 dTDP-sugar isomerase
2 2 SCOP 51247 BC C-terminal domain-like
2 2 SCOP 51487 beta-glycanases
2 2 SCOP 51599 Class I DAHP synthetase
2 2 SCOP 51609 D-glucarate dehydratase-like
2 2 SCOP 51704 Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain
2 2 SCOP 51943 FAD/NAD-linked reductases, N-terminal and central domains
2 2 SCOP 52097 Clp protease, ClpP subunit
2 2 SCOP 52211 Succinyl-CoA synthetase domains
2 2 SCOP 52243 Cobalamin (vitamin B12)-binding domain
2 2 SCOP 52325 DJ-1/PfpI
2 2 SCOP 52397 Adenylyltransferase
2 2 SCOP 52403 N-type ATP pyrophosphatases
2 2 SCOP 52508 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
2 2 SCOP 52789 Low-molecular-weight phosphotyrosine protein phosphatases
2 2 SCOP 52901 Glutathione peroxidase-like
2 2 SCOP 53099 Ribonuclease H
2 2 SCOP 53138 Ribosomal protein L18 and S11
2 2 SCOP 53168 Purine and uridine phosphorylases
2 2 SCOP 53464 glucose-1-phosphate thymidylyltransferase
2 2 SCOP 53614 Ribokinase-like
2 2 SCOP 53624 MurCDEF
2 2 SCOP 53672 Aspartate/ornithine carbamoyltransferase
2 2 SCOP 53733 Aconitase iron-sulfur domain
2 2 SCOP 53785 Phosphofructokinase
2 2 SCOP 53791 Tetrapyrrole methylase
2 2 SCOP 54212 Translational machinery components
2 1 SCOP 54229 Ribonuclease PH domain 1-like
2 2 SCOP 54232 GHMP Kinase, N-terminal domain
2 2 SCOP 54720 Fe,Mn superoxide dismutase (SOD), C-terminal domain
2 2 SCOP 54827 Enolase N-terminal domain-like
2 1 SCOP 54981 EF-G/eEF-2 domains III and V
2 2 SCOP 55069 Peptide methionine sulfoxide reductase
2 2 SCOP 55121 Pseudouridine synthase I TruA
2 2 SCOP 55209 Enolpyruvate transferase, EPT
2 1 SCOP 55327 PurM N-terminal domain-like
2 2 SCOP 55425 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
2 2 SCOP 55502 Neutral endopeptidase (neprilysin)
2 2 SCOP 55782 GAF domain
2 2 SCOP 55822 YrdC-like
2 2 SCOP 56220 DNase I-like
2 2 SCOP 56236 Class II glutamine amidotransferases
2 2 SCOP 56323 ADC synthase
2 2 SCOP 56350 Lambda integrase-like, catalytic core
2 2 SCOP 56530 FAH
2 2 SCOP 56602 beta-Lactamase/D-ala carboxypeptidase
2 2 SCOP 56656 Inositol monophosphatase/fructose-1,6-bisphosphatase-like
2 2 SCOP 56713 Prokaryotic type I DNA topoisomerase
2 2 SCOP 56720 Type II DNA topoisomerase
2 2 SCOP 56895 Aquaporin-like
2 2 SCOP 56948 Ligand-gated protein channel
2 2 SCOP 64168 SurE-like
2 2 SCOP 69222 PepX C-terminal domain-like
2 2 SCOP 69581 PepX catalytic domain-like
2 2 SCOP 69599 mono-SIS domain
2 1 SCOP 74753 Catalase-peroxidase KatG
2 2 SCOP 74911 Aldose 1-epimerase (mutarotase)
2 2 SCOP 75006 alpha-L-arabinanase-like
2 2 SCOP 75621 Release factor
2 2 SCOP 88741 Branched-chain alpha-keto acid dehydrogenase Pyr module
2 2 SCOP 88766 Branched-chain alpha-keto acid dehydrogenase PP module
2 2 SCOP 88786 C5 cytosine-specific DNA methylase, DCM
2 2 SCOP 89624 Ribose/Galactose isomerase RpiB/AlsB
2 2 SCOP 89797 CoA-transferase family III (CaiB/BaiF)
2 2 SCOP 100888 Lesion bypass DNA polymerase (Y-family), catalytic domain
2 2 SCOP 100921 Heat shock protein 70kD (HSP70), peptide-binding domain
2 2 SCOP 101875 YceI-like
2 2 SCOP 102656 PdxA-like
2 2 SCOP 110377 UxuA-like
2 1 SCOP 110384 Cobalamin-independent methionine synthase
2 2 SCOP 110636 ROK
2 2 SCOP 118216 Proton glutamate symport protein
2 2 SCOP 140445 YciF-like
2 2 SCOP 141628 AlkB-like
2 2 SCOP 142635 hypothetical RNA methyltransferase
2 1 SCOP 142678 Glycine dehydrogenase subunits (GDC-P)
2 2 SCOP 143772 BT0354 N-terminal domain-like
2 2 SCOP 143927 beta-CASP RNA-metabolising hydrolases
2 2 SCOP 143976 lvD/EDD N-terminal domain-like
2 2 SCOP 161094 MgtE membrane domain-like
1 1 SCOP 46610 Fe,Mn superoxide dismutase (SOD), N-terminal domain
1 1 SCOP 46947 Ribosomal protein S13
1 1 SCOP 46978 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
1 1 SCOP 47447 Signal peptide-binding domain
1 1 SCOP 47645 Methionine synthase domain
1 1 SCOP 47786 NAD+-dependent DNA ligase, domain 3
1 1 SCOP 47974 Ribosomal protein S7
1 1 SCOP 48109 Carbamoyl phosphate synthetase, large subunit connection domain
1 1 SCOP 48151 Endonuclease III
1 1 SCOP 48154 Mismatch glycosylase
1 1 SCOP 48257 Citrate synthase
1 1 SCOP 48335 DNA repair protein MutS, domain III
1 1 SCOP 48572 HAL/PAL-like
1 1 SCOP 48577 Isoprenyl diphosphate synthases
1 1 SCOP 48593 GroEL chaperone, ATPase domain
1 1 SCOP 49803 beta-Galactosidase/glucuronidase, N-terminal domain
1 1 SCOP 49864 Hyaluronate lyase-like, C-terminal domain
1 1 SCOP 50114 C-terminal domain of ribosomal protein L2
1 1 SCOP 50136 Alcohol dehydrogenase-like, N-terminal domain
1 1 SCOP 50194 Ribosomal protein L14
1 1 SCOP 50263 Single strand DNA-binding domain, SSB
1 1 SCOP 50461 Ribosomal protein L3
1 1 SCOP 50466 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
1 1 SCOP 50476 PNP-oxidase like
1 1 SCOP 50490 3-methyladenine DNA glycosylase (AAG, ANPG, MPG)
1 1 SCOP 50495 Prokaryotic proteases
1 1 SCOP 50616 N-terminal domain of alpha and beta subunits of F1 ATP synthase
1 1 SCOP 50693 Pyruvoyl dependent aspartate decarboxylase, ADC
1 1 SCOP 50719 Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain
1 1 SCOP 50892 Cyclophilin (peptidylprolyl isomerase)
1 1 SCOP 50953 Soluble quinoprotein glucose dehydrogenase
1 1 SCOP 50994 Prolyl oligopeptidase, N-terminal domain
1 1 SCOP 51137 Galacturonase
1 1 SCOP 51144 Chondroitinase B
1 1 SCOP 51162 UDP N-acetylglucosamine acyltransferase
1 1 SCOP 51165 Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
1 1 SCOP 51171 GlmU C-terminal domain-like
1 1 SCOP 51231 Biotinyl/lipoyl-carrier proteins and domains
1 1 SCOP 51284 dUTPase-like
1 1 SCOP 51352 Triosephosphate isomerase (TIM)
1 1 SCOP 51372 D-ribulose-5-phosphate 3-epimerase
1 1 SCOP 51392 Thiamin phosphate synthase
1 1 SCOP 51413 Inosine monophosphate dehydrogenase (IMPDH)
1 1 SCOP 51420 Alanine racemase-like, N-terminal domain
1 1 SCOP 51427 "Hypothetical" protein ybl036c
1 1 SCOP 51521 Family 1 of glycosyl hydrolase
1 1 SCOP 51591 Class II FBP aldolase
1 1 SCOP 51594 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
1 1 SCOP 51605 Enolase
1 1 SCOP 51622 Pyruvate kinase
1 1 SCOP 51632 Phosphoenolpyruvate carboxylase
1 1 SCOP 51650 RuBisCo, large subunit, C-terminal domain
1 1 SCOP 51665 Xylose isomerase
1 1 SCOP 51691 NadC C-terminal domain-like
1 1 SCOP 51714 tRNA-guanine transglycosylase
1 1 SCOP 51718 Dihydropteroate synthetase
1 1 SCOP 51727 Uroporphyrinogen decarboxylase, UROD
1 1 SCOP 51731 Methylenetetrahydrofolate reductase
1 1 SCOP 51736 Alcohol dehydrogenase-like, C-terminal domain
1 1 SCOP 51848 LDH N-terminal domain-like
1 1 SCOP 51900 CoA-binding domain
1 1 SCOP 51934 Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
1 1 SCOP 52002 R1 subunit of ribonucleotide reductase, C-terminal domain
1 1 SCOP 52017 LeuD-like
1 1 SCOP 52022 Carbamoyl phosphate synthetase, small subunit N-terminal domain
1 1 SCOP 52030 GroEL-like chaperone, apical domain
1 1 SCOP 52081 Ribosomal proteins L15p and L18e
1 1 SCOP 52100 Tail specific protease, catalytic domain
1 1 SCOP 52122 Lumazine synthase
1 1 SCOP 52142 Uracil-DNA glycosylase
1 1 SCOP 52152 FabD-like
1 1 SCOP 52162 Ribosomal protein L13
1 1 SCOP 52167 Ribosomal protein L4
1 1 SCOP 52173 CheY-related
1 1 SCOP 52256 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
1 1 SCOP 52300 S-adenosylhomocystein hydrolase
1 1 SCOP 52305 Type II 3-dehydroquinate dehydratase
1 1 SCOP 52314 Ribosomal protein S2
1 1 SCOP 52410 PAPS reductase-like
1 1 SCOP 52419 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
1 1 SCOP 52426 Cryptochrome/photolyase, N-terminal domain
1 1 SCOP 52471 C-terminal domain of the electron transfer flavoprotein alpha subunit
1 1 SCOP 52475 Pyruvate oxidase and decarboxylase, middle domain
1 1 SCOP 52491 Tubulin, GTPase domain
1 1 SCOP 52513 NagB-like
1 1 SCOP 52769 Arginase-like amidino hydrolases
1 1 SCOP 52944 ATP synthase (F1-ATPase), gamma subunit
1 1 SCOP 52955 Anticodon-binding domain of Class II aaRS
1 1 SCOP 52973 ITPase (Ham1)
1 1 SCOP 52976 Maf-like
1 1 SCOP 53023 Very short patch repair (VSR) endonuclease
1 1 SCOP 53045 5' to 3' exonuclease catalytic domain
1 1 SCOP 53057 beta-carbonic anhydrase, cab
1 1 SCOP 53118 DnaQ-like 3'-5' exonuclease
1 1 SCOP 53179 Peptidyl-tRNA hydrolase-like
1 1 SCOP 53214 LigB-like
1 1 SCOP 53240 Malic enzyme N-domain
1 1 SCOP 53296 Phosphoribosylpyrophosphate synthetase-like
1 1 SCOP 53354 Protein-L-isoaspartyl O-methyltransferase
1 1 SCOP 53487 Carboxylesterase
1 1 SCOP 53496 Prolyl oligopeptidase, C-terminal domain
1 1 SCOP 53598 Dihydrofolate reductases
1 1 SCOP 53629 Folylpolyglutamate synthetase
1 1 SCOP 53640 AraD-like aldolase/epimerase
1 1 SCOP 53660 Dimeric isocitrate & isopropylmalate dehydrogenases
1 1 SCOP 53698 double-SIS domain
1 1 SCOP 53701 Phosphoglucose isomerase, PGI
1 1 SCOP 53749 Phosphoglycerate kinase
1 1 SCOP 53760 Peptidoglycan biosynthesis glycosyltransferase MurG
1 1 SCOP 53775 Glutaminase/Asparaginase
1 1 SCOP 53796 PEP carboxykinase C-terminal domain
1 1 SCOP 53801 Ferrochelatase
1 1 SCOP 54224 DNA gyrase/MutL, second domain
1 1 SCOP 54535 FKBP immunophilin/proline isomerase
1 1 SCOP 54571 Ribosomal protein S19
1 1 SCOP 54598 Antibiotic resistance proteins
1 1 SCOP 54602 Extradiol dioxygenases
1 1 SCOP 54737 Ribosomal protein L7/12, C-terminal domain
1 1 SCOP 54748 Ribosomal L11/L12e N-terminal domain
1 1 SCOP 54811 GMP synthetase C-terminal dimerisation domain
1 1 SCOP 54815 Prokaryotic type KH domain (KH-domain type II)
1 1 SCOP 54822 Ribosomal protein S3 C-terminal domain
1 1 SCOP 54920 Nucleoside diphosphate kinase, NDK
1 1 SCOP 55000 Ribosomal protein S10
1 1 SCOP 55084 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
1 1 SCOP 55178 Ribosomal protein S4
1 1 SCOP 55187 Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
1 1 SCOP 55195 Ribosome recycling factor, RRF
1 1 SCOP 55272 DNA repair protein MutS, domain I
1 1 SCOP 55283 Ribosomal protein L5
1 1 SCOP 55299 YjgF/L-PSP
1 1 SCOP 55363 Homoserine dehydrogenase-like
1 1 SCOP 55368 Dihydrodipicolinate reductase-like
1 1 SCOP 55376 Glucose 6-phosphate dehydrogenase-like
1 1 SCOP 55621 GTP cyclohydrolase I
1 1 SCOP 55625 6-pyruvoyl tetrahydropterin synthase
1 1 SCOP 55832 Thymidylate synthase/dCMP hydroxymethylase
1 1 SCOP 55847 N-acetylmuramoyl-L-alanine amidase-like
1 1 SCOP 56038 B3/B4 domain of PheRS, PheT
1 1 SCOP 56043 PurM C-terminal domain-like
1 1 SCOP 56048 Ribosomal protein S8
1 1 SCOP 56054 Ribosomal protein L6
1 1 SCOP 56081 Succinyl-CoA synthetase, beta-chain, N-terminal domain
1 1 SCOP 56096 Adenylation domain of NAD+-dependent DNA ligase
1 1 SCOP 56105 SAICAR synthase
1 1 SCOP 56184 Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain
1 1 SCOP 56195 Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
1 1 SCOP 56244 Penicillin acylase, catalytic domain
1 1 SCOP 56267 DmpA-like
1 1 SCOP 56307 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain
1 1 SCOP 56328 Lactate & malate dehydrogenases, C-terminal domain
1 1 SCOP 56421 Peptide deformylase
1 1 SCOP 56426 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
1 1 SCOP 56508 Methionine synthase SAM-binding domain
1 1 SCOP 56535 Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
1 1 SCOP 56575 Serpins
1 1 SCOP 56635 Heme-dependent catalases
1 1 SCOP 56673 DNA polymerase I
1 1 SCOP 56732 DNA primase DnaG catalytic core
1 1 SCOP 56797 Dehydroquinate synthase, DHQS
1 1 SCOP 56809 Ribosomal protein L1
1 1 SCOP 63412 MPP-like
1 1 SCOP 63738 Leukotriene A4 hydrolase N-terminal domain
1 1 SCOP 63893 Pyridoxine 5'-phosphate synthase
1 1 SCOP 63912 1,4-beta-N-acetylmuraminidase
1 1 SCOP 63971 Inosicase
1 1 SCOP 63976 Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
1 1 SCOP 63984 Sir2 family of transcriptional regulators
1 1 SCOP 64006 Undecaprenyl diphosphate synthase
1 1 SCOP 64159 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
1 1 SCOP 64162 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, catalytic domain
1 1 SCOP 64198 AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
1 1 SCOP 64264 Prokaryotic ribosomal protein L17
1 1 SCOP 64338 Leukotriene A4 hydrolase catalytic domain
1 1 SCOP 64372 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
1 1 SCOP 64485 RNA-polymerase beta
1 1 SCOP 64490 RNA-polymerase beta-prime
1 1 SCOP 68901 Cytidylytransferase
1 1 SCOP 68924 PEP carboxykinase N-terminal domain
1 1 SCOP 69337 Alpha subunit of glutamate synthase, C-terminal domain
1 1 SCOP 69501 DTD-like
1 1 SCOP 69573 Molybdenum cofactor biosynthesis protein MoeB
1 1 SCOP 69602 L-histidinol dehydrogenase HisD
1 1 SCOP 69746 Pseudouridine synthase II TruB
1 1 SCOP 69766 IpsF-like
1 1 SCOP 69892 Iron-containing alcohol dehydrogenase
1 1 SCOP 69912 Clc chloride channel
1 1 SCOP 74656 CoA transferase alpha subunit-like
1 1 SCOP 74657 CoA transferase beta subunit-like
1 1 SCOP 74732 Ribosomal protein L20
1 1 SCOP 74756 3-Methyladenine DNA glycosylase I (Tag)
1 1 SCOP 74983 Small protein B (SmpB)
1 1 SCOP 75073 Hydantoinase (dihydropyrimidinase), catalytic domain
1 1 SCOP 75079 Renal dipeptidase
1 1 SCOP 75082 Uronate isomerase-like
1 1 SCOP 75218 SpoU-like RNA 2'-O ribose methyltransferase
1 1 SCOP 75292 YjeF C-terminal domain-like
1 1 SCOP 75297 N-acetyl-l-glutamate kinase
1 1 SCOP 75305 Amidase signature (AS) enzymes
1 1 SCOP 75323 Exonuclease RecJ
1 1 SCOP 75459 Pseudouridine synthase RsuA/RluD
1 1 SCOP 75626 YebC-like
1 1 SCOP 81441 Cytochrome c oxidase subunit I-like
1 1 SCOP 81605 PP2C-like
1 1 SCOP 81854 Family 10 polysaccharide lyase
1 1 SCOP 81887 Helical scaffold and wing domains of SecA
1 1 SCOP 82052 Obg GTP-binding protein N-terminal domain
1 1 SCOP 82172 DPP6 N-terminal domain-like
1 1 SCOP 82267 TatD Mg-dependent DNase-like
1 1 SCOP 82283 Homocysteine S-methyltransferase
1 1 SCOP 82371 YbeA-like
1 1 SCOP 82475 MraW-like putative methyltransferases
1 1 SCOP 82526 Monomeric isocitrate dehydrogenase
1 1 SCOP 82540 Trehalose-6-phosphate synthase, OtsA
1 1 SCOP 82583 G domain-linked domain
1 1 SCOP 82694 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
1 1 SCOP 88724 Pyruvate oxidase and decarboxylase Pyr module
1 1 SCOP 88749 Pyruvate oxidase and decarboxylase PP module
1 1 SCOP 88760 TK-like PP module
1 1 SCOP 88784 rRNA adenine dimethylase-like
1 1 SCOP 88947 Sigma2 domain of RNA polymerase sigma factors
1 1 SCOP 89032 Cobalamin adenosyltransferase
1 1 SCOP 89503 Ketopantoate hydroxymethyltransferase PanB
1 1 SCOP 89590 NADPH-dependent FMN reductase
1 1 SCOP 89629 tRNA(m1G37)-methyltransferase TrmD
1 1 SCOP 89729 Patatin
1 1 SCOP 101354 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 SCOP 101905 GyrA/ParC C-terminal domain-like
1 1 SCOP 101961 Stabilizer of iron transporter SufD
1 1 SCOP 101984 Pirin-like
1 1 SCOP 102111 (2r)-phospho-3-sulfolactate synthase ComA
1 1 SCOP 102115 Biotin synthase
1 1 SCOP 102118 Oxygen-independent coproporphyrinogen III oxidase HemN
1 1 SCOP 102317 NagD-like
1 1 SCOP 102406 MoCo carrier protein-like
1 1 SCOP 102589 LmbE-like
1 1 SCOP 102646 CoaB-like
1 1 SCOP 102660 PlsX-like
1 1 SCOP 102663 Phosphotransacetylase
1 1 SCOP 102706 NIF3 (NGG1p interacting factor 3)-like
1 1 SCOP 102755 Hsp90 middle domain
1 1 SCOP 102769 ATP-dependent protease Lon (La), catalytic domain
1 1 SCOP 102887 Coproporphyrinogen III oxidase
1 1 SCOP 102928 NifU/IscU domain
1 1 SCOP 102945 RelA/SpoT domain
1 1 SCOP 103011 Galactokinase
1 1 SCOP 103026 Aminomethyltransferase folate-binding domain
1 1 SCOP 103264 Chorismate synthase, AroC
1 1 SCOP 103366 Hypothetical protein PH1602
1 1 SCOP 103474 Glycerol-3-phosphate transporter
1 1 SCOP 110070 ApaG-like
1 1 SCOP 110318 KduI-like
1 1 SCOP 110368 NeuB-like
1 1 SCOP 110400 ThiG-like
1 1 SCOP 110734 Glycosyl transferases group 1
1 1 SCOP 110739 Glycerate kinase I
1 1 SCOP 110880 Hypothetical protein BC1747
1 1 SCOP 110883 3-demethylubiquinone-9 3-methyltransferase
1 1 SCOP 110910 Monomeric nicotinate phosphoribosyltransferase C-terminal domain
1 1 SCOP 111155 Porphyromonas-type peptidylarginine deiminase
1 1 SCOP 111160 Glutamate-cysteine ligase family 2 (GCS2)
1 1 SCOP 111168 AHSA1 domain
1 1 SCOP 111305 Recombination protein RecR
1 1 SCOP 111327 Urocanase
1 1 SCOP 111332 NAD kinase-like
1 1 SCOP 111338 QueA-like
1 1 SCOP 111353 Ammonium transporter
1 1 SCOP 117372 YicI catalytic domain-like
1 1 SCOP 117558 Type II thymidine kinase
1 1 SCOP 117783 YbjQ-like
1 1 SCOP 117888 Ribosomal protein L16p
1 1 SCOP 140479 LemA-like
1 1 SCOP 140491 Nqo1C-terminal domain-like
1 1 SCOP 140737 Rv1873-like
1 1 SCOP 140991 FtsH protease domain-like
1 1 SCOP 141245 Ribosomal protein L19
1 1 SCOP 141331 AraA C-terminal domain-like
1 1 SCOP 141368 UbiD middle domain-like
1 1 SCOP 141703 Atu2648/PH1033-like
1 1 SCOP 142020 Nqo1 FMN-binding domain-like
1 1 SCOP 142058 Putative acetylxylan esterase-like
1 1 SCOP 142077 HTS-like
1 1 SCOP 142434 CinA-like
1 1 SCOP 142696 RibA-like
1 1 SCOP 142755 NadA-like
1 1 SCOP 142760 AraA N-terminal and middle domain-like
1 1 SCOP 142765 YgbK-like
1 1 SCOP 142824 ComB-like
1 1 SCOP 143244 Nqo5-like
1 1 SCOP 143549 Serine dehydratase beta chain-like
1 1 SCOP 143642 LplA-like
1 1 SCOP 143711 LFTR-like
1 1 SCOP 143728 PPK middle domain-like
1 1 SCOP 143812 GatB/GatE catalytic domain-like
1 1 SCOP 143866 CorA soluble domain-like
1 1 SCOP 143906 Gamma-glutamyltranspeptidase-like
1 1 SCOP 143916 RNase Z-like
1 1 SCOP 143959 Sulfatase-modifying factor-like
1 1 SCOP 144028 Nqo4-like
1 1 SCOP 144031 Nq06-like
1 1 SCOP 144040 Dac-like
1 1 SCOP 158600 MgsA/YrvN C-terminal domain-like
1 1 SCOP 158607 AadK C-terminal domain-like
1 1 SCOP 158833 Tex N-terminal region-like
1 1 SCOP 159112 RNB domain-like
1 1 SCOP 159400 Imidazolonepropionase-like
1 1 SCOP 159436 HI0933 N-terminal domain-like
1 1 SCOP 159635 Tex RuvX-like domain-like
1 1 SCOP 159720 mannose-1-phosphate guanylyl transferase
1 1 SCOP 159756 O-acetyltransferase
1 1 SCOP 160257 AadK N-terminal domain-like
1 1 SCOP 160664 Phytochrome-specific domain

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The following families have one or more weak hits:

SCOP family Cation efflux protein transmembrane domain-like
SCOP family MetI-like
SCOP family HI0933 insert domain-like
SCOP family Diacylglycerol kinase-like
SCOP family GpdQ-like
SCOP family CorC/HlyC domain-like
SCOP family Atu1531-like
SCOP family BphP N-terminal domain-like
SCOP family Smr domain
SCOP family Ribosomal protein L10-like
SCOP family YiiL-like
SCOP family Iojap/YbeB-like
SCOP family Cation efflux protein cytoplasmic domain-like
SCOP family YegP-like
SCOP family CHU142-like
SCOP family MM3350-like
SCOP family YdhG-like
SCOP family FucT-like
SCOP family YxiM C-terminal domain-like
SCOP family Sfri0576-like
SCOP family Zn-dependent arginine carboxypeptidase-like
SCOP family VPA0057-like
SCOP family Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain
SCOP family AlaX-M N-terminal domain-like
SCOP family NPCBM-like
SCOP family YxiM N-terminal domain-like
SCOP family Smr-associated domain
SCOP family MgtE N-terminal domain-like
SCOP family LanC-like
SCOP family Trehalase-like
SCOP family Tex HhH-containing domain-like
SCOP family HAMP domain
SCOP family PSPTO2686-like
SCOP family Ribosomal protein L33p
SCOP family Ribosomal protein L32p
SCOP family Rhomboid-like
SCOP family Magnesium transport protein CorA, transmembrane region
SCOP family UbiD C-terminal domain-like
SCOP family Ribosomal protein L31p
SCOP family Ribosomal protein L28
SCOP family ApbE-like
SCOP family YojJ-like
SCOP family TRCF domain
SCOP family UTRA domain
SCOP family VC0467-like
SCOP family Aspartokinase allosteric domain-like
SCOP family IlvH-like
SCOP family BC1024-like
SCOP family Ribosomal protein L35p
SCOP family Nqo1 middle domain-like
SCOP family YjbR-like
SCOP family NlpC/P60
SCOP family RibD C-terminal domain-like
SCOP family Methyltransferase 10 domain
SCOP family TrmB-like
SCOP family YhhF-like
SCOP family CoaX-like
SCOP family Selenoprotein W-related
SCOP family NQO2-like
SCOP family YkgG-like
SCOP family Histidinol phosphatase-like
SCOP family LD-carboxypeptidase A N-terminal domain-like
SCOP family LD-carboxypeptidase A C-terminal domain-like
SCOP family IlvD/EDD C-terminal domain-like
SCOP family PP1699/LP2961-like
SCOP family HisI-like
SCOP family LON domain-like
SCOP family PG0164-like
SCOP family PhyH-like
SCOP family Pentapeptide repeats
SCOP family L,D-transpeptidase catalytic domain-like
SCOP family TM0957-like
SCOP family CarD-like
SCOP family Ply C-terminal domain-like
SCOP family PhnA-like
SCOP family Beta-D-xylosidase C-terminal domain-like
SCOP family Ribosomal protein L21p
SCOP family Pre-dockerin domain
SCOP family CalX-beta domain
SCOP family Glu-tRNAGln amidotransferase C subunit
SCOP family Atu0492-like
SCOP family Bacterial tryptophan 2,3-dioxygenase
SCOP family Fic-like
SCOP family TROVE domain-like
SCOP family HisE-like (PRA-PH)
SCOP family TyrA dimerization domain-like
SCOP family GatB/GatE C-terminal domain-like
SCOP family PPK N-terminal domain-like
SCOP family IscX-like
SCOP family HxlR-like
SCOP family Nudix-associated domain
SCOP family FtsK C-terminal domain-like
SCOP family Synuclein
SCOP family Type II thymidine kinase zinc finger
SCOP family PaaD-like
SCOP family NifU C-terminal domain-like
SCOP family Band 7/SPFH domain
SCOP family Acylamino-acid-releasing enzyme, C-terminal donain
SCOP family CAC2371-like
SCOP family TM1631-like
SCOP family Putative glucosidase YicI, domain 3
SCOP family Kelch motif
SCOP family YicI N-terminal domain-like
SCOP family ATP-dependent DNA ligase DNA-binding domain
SCOP family MazG-like
SCOP family ProC C-terminal domain-like
SCOP family TrmE connector domain
SCOP family XseB-like
SCOP family PadR-like
SCOP family TrkA C-terminal domain-like
SCOP family OmpH-like
SCOP family Outer membrane protein transport protein
SCOP family YjbQ-like
SCOP family VanX-like
SCOP family FGAM synthase PurL, PurS-like domain
SCOP family DGPF domain (Pfam 04946)
SCOP family 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
SCOP family Monomeric nicotinate phosphoribosyltransferase N-terminal domain-like
SCOP family FabZ-like
SCOP family ParB-like nuclease domain
SCOP family Hypothetical protein SAV1430
SCOP family UbiE/COQ5-like
SCOP family PIWI domain
SCOP family YeaZ-like
SCOP family Ppx/GppA phosphatase
SCOP family Methenyltetrahydrofolate synthetase
SCOP family Trehalose-phosphatase
SCOP family MoCo biosynthesis proteins
SCOP family Ribosomal L27 protein
SCOP family Serine acetyltransferase
SCOP family FGAM synthase PurL, linker domain
SCOP family KorB DNA-binding domain-like
SCOP family TSP type-3 repeat
SCOP family Preprotein translocase SecY subunit
SCOP family Multidrug resistance efflux transporter EmrE
SCOP family LacY-like proton/sugar symporter
SCOP family Hypothetical protein TM0207
SCOP family Hypothetical protein TM0160
SCOP family Predicted metal-dependent hydrolase
SCOP family OmpA-like
SCOP family Cell division protein ZapA-like
SCOP family YigZ N-terminal domain-like
SCOP family Imidazole glycerol phosphate dehydratase
SCOP family Trigger factor ribosome-binding domain
SCOP family JAB1/MPN domain
SCOP family (Uracil-5-)-methyltransferase
SCOP family Ribosomal protein L11 methyltransferase PrmA
SCOP family NOL1/NOP2/sun
SCOP family Bacterial fluorinating enzyme, N-terminal domain
SCOP family N-acetylmuramoyl-L-alanine amidase-like
SCOP family Putative Holliday junction resolvase RuvX
SCOP family Hypothetical protein MraZ
SCOP family Peptidoglycan hydrolase LytM
SCOP family NHL repeat
SCOP family Aminopeptidase/glucanase lid domain
SCOP family Aminomethyltransferase beta-barrel domain
SCOP family TRAM domain
SCOP family Hypothetical protein YesU
SCOP family RecQ helicase DNA-binding domain-like
SCOP family FUR-like
SCOP family Penicillinase repressor
SCOP family Heat shock protein 70kD (HSP70), C-terminal subdomain
SCOP family Lesion bypass DNA polymerase (Y-family), little finger domain
SCOP family YhfA-like
SCOP family YajQ-like
SCOP family Plant stress-induced protein
SCOP family Ribosome-binding factor A, RbfA
SCOP family UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC
SCOP family ADP-heptose LPS heptosyltransferase II
SCOP family N5-glutamine methyltransferase, HemK
SCOP family YggJ C-terminal domain-like
SCOP family TAP-like
SCOP family NodB-like polysaccharide deacetylase
SCOP family PHP domain
SCOP family Glycerophosphoryl diester phosphodiesterase
SCOP family HMGL-like
SCOP family YggJ N-terminal domain-like
SCOP family Outer-membrane lipoproteins carrier protein LolA
SCOP family HesB-like domain
SCOP family Chondroitin ABC lyase I, N-terminal domain
SCOP family GatB/YqeY domain
SCOP family Antibiotic binding domain of TipA-like multidrug resistance regulators
SCOP family LysR-like transcriptional regulators
SCOP family Protein kinases, catalytic subunit
SCOP family ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain
SCOP family TK-like Pyr module
SCOP family Eukaryotic ODC-like
SCOP family Alanine racemase
SCOP family Sigma4 domain
SCOP family Mechanosensitive channel protein MscS (YggB), transmembrane region
SCOP family GIY-YIG endonuclease
SCOP family FemXAB nonribosomal peptidyltransferases
SCOP family Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
SCOP family Mechanosensitive channel protein MscS (YggB), C-terminal domain
SCOP family N-utilization substance G protein NusG, N-terminal domain
SCOP family Poly A polymerase head domain-like
SCOP family SufE-like
SCOP family Adaptor protein ClpS (YljA)
SCOP family MaoC-like
SCOP family YbaB-like
SCOP family DPP6 catalytic domain-like
SCOP family 5'(3')-deoxyribonucleotidase (dNT-2)
SCOP family PP-loop ATPase
SCOP family Shikimate dehydrogenase-like
SCOP family Proline dehydrohenase domain of bifunctional PutA protein
SCOP family Hypoxia-inducible factor HIF ihhibitor (FIH1)
SCOP family Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
SCOP family YVTN repeat
SCOP family FAS1 domain
SCOP family ATP-dependent riboflavin kinase-like
SCOP family Heme chaperone CcmE
SCOP family Mechanosensitive channel protein MscS (YggB), middle domain
SCOP family N-utilization substance G protein NusG, C-terminal domain
SCOP family Double Clp-N motif
SCOP family Poly A polymerase C-terminal region-like
SCOP family Mannitol 2-dehydrogenase
SCOP family Porin chaperone SurA, peptide-binding domain
SCOP family Putative methyltransferase TM0872, insert domain
SCOP family Pre-protein crosslinking domain of SecA
SCOP family Chromosomal replication initiation factor DnaA C-terminal domain IV
SCOP family Meta-cation ATPase, catalytic domain P
SCOP family Calcium ATPase, transduction domain A
SCOP family Middle domain of MutM-like DNA repair proteins
SCOP family N-terminal domain of MutM-like DNA repair proteins
SCOP family F1F0 ATP synthase subunit B, membrane domain
SCOP family Cytochrome c oxidase subunit II-like, transmembrane region
SCOP family Cytochrome c oxidase subunit III-like
SCOP family F1F0 ATP synthase subunit A
SCOP family F1F0 ATP synthase subunit C
SCOP family Gated mechanosensitive channel
SCOP family E-set domains of sugar-utilizing enzymes
SCOP family TGS domain
SCOP family Siroheme synthase middle domains-like
SCOP family IclR ligand-binding domain-like
SCOP family RNA 2'-O ribose methyltransferase substrate binding domain
SCOP family Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain
SCOP family YhbC-like, N-terminal domain
SCOP family Glucose-inhibited division protein B (GidB)
SCOP family NRPS condensation domain (amide synthase)
SCOP family YjeE-like
SCOP family beta-Phosphoglucomutase-like
SCOP family Siroheme synthase N-terminal domain-like
SCOP family Hypothetical protein YgbM (EC1530)
SCOP family SelR domain
SCOP family YhbC-like, C-terminal domain
SCOP family HtrA-like serine proteases
SCOP family Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha)
SCOP family Argininosuccinate synthetase, C-terminal domain
SCOP family Ribosome binding protein Y (YfiA homologue)
SCOP family Glutamyl tRNA-reductase catalytic, N-terminal domain
SCOP family Lrp/AsnC-like transcriptional regulator C-terminal domain
SCOP family Transcription factor NusA, N-terminal domain
SCOP family HemD-like
SCOP family Thioesterase domain of polypeptide, polyketide and fatty acid synthases
SCOP family Hypothetical protein HI0319 (YecO)
SCOP family ArsC-like
SCOP family Probable phosphatase YrbI
SCOP family iota-carrageenase
SCOP family Integrin alpha N-terminal domain
SCOP family RecG "wedge" domain
SCOP family Family 6 carbohydrate binding module, CBM6
SCOP family RNase III catalytic domain-like
SCOP family 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
SCOP family Lrp/AsnC-like transcriptional regulator N-terminal domain
SCOP family C-terminal domain of ProRS
SCOP family Phosphoserine phosphatase
SCOP family Carbamilase
SCOP family IPP isomerase-like
SCOP family Methylmalonyl-CoA epimerase
SCOP family SGL-like
SCOP family Riboflavin synthase
SCOP family Family 9 carbohydrate-binding module, CBD9
SCOP family Leukotriene A4 hydrolase C-terminal domain
SCOP family Glycosyltransferase family 36 C-terminal domain
SCOP family TS-N domain
SCOP family MurE/MurF N-terminal domain
SCOP family Ferredoxin reductase FAD-binding domain-like
SCOP family MarR-like transcriptional regulators
SCOP family Coiled-coil domain of nucleotide exchange factor GrpE
SCOP family Tropomyosin
SCOP family DnaJ/Hsp40 cysteine-rich domain
SCOP family Ribosomal protein L36
SCOP family DNA primase zinc finger
SCOP family Methionyl-tRNA synthetase (MetRS), Zn-domain
SCOP family Ribosomal protein S14
SCOP family HIPIP (high potential iron protein)
SCOP family Anthrax protective antigen
SCOP family Outer membrane protein
SCOP family YihX-like
SCOP family Insert subdomain of RNA polymerase alpha subunit
SCOP family Penicillin binding protein dimerisation domain
SCOP family Eukaryotic DNA topoisomerase I, catalytic core
SCOP family Nitrilase
SCOP family Purple acid phosphatase-like
SCOP family Glyoxalase II (hydroxyacylglutathione hydrolase)
SCOP family FAD-linked oxidases, N-terminal domain
SCOP family ATP-dependent DNA ligase catalytic domain
SCOP family Pyruvate phosphate dikinase, N-terminal domain
SCOP family ATP-binding domain of peptide synthetases
SCOP family Nitrite and sulphite reductase 4Fe-4S domain-like
SCOP family DNA polymerase III, beta subunit
SCOP family Phosphoglucomutase, C-terminal domain
SCOP family Glutamine synthetase catalytic domain
SCOP family Histidine kinase
SCOP family Heat shock protein 90, HSP90, N-terminal domain
SCOP family 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
SCOP family MutT-like
SCOP family Heme-binding PAS domain
SCOP family N-acetyl transferase, NAT
SCOP family Biotin holoenzyme synthetase
SCOP family Ribonuclease PH domain 2-like
SCOP family Ribosomal protein L9 N-domain
SCOP family Ribosomal protein L9 C-domain
SCOP family DHN aldolase/epimerase
SCOP family beta-N-acetylhexosaminidase domain
SCOP family NADH oxidase/flavin reductase
SCOP family Tubulin, C-terminal domain
SCOP family GAD domain
SCOP family RNA polymerase alpha subunit dimerisation domain
SCOP family PCD-like
SCOP family Translation initiation factor IF3, C-terminal domain
SCOP family Heat shock protein 15 kD
SCOP family eIF1-like
SCOP family Ribosomal protein L30p/L7e
SCOP family Homoserine kinase
SCOP family Probable ACP-binding domain of malonyl-CoA ACP transacylase
SCOP family Bacterial exopeptidase dimerisation domain
SCOP family Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
SCOP family HMA, heavy metal-associated domain
SCOP family Ribosomal protein S6
SCOP family Anticodon-binding domain of PheRS
SCOP family Acylphosphatase-like
SCOP family Ribulose 1,5-bisphosphate carboxylase-oxygenase
SCOP family Canonical RBD
SCOP family Ferredoxin domains from multidomain proteins
SCOP family Short-chain ferredoxins
SCOP family GroEL-like chaperone, intermediate domain
SCOP family Ribosomal protein L22
SCOP family Eukaryotic type KH-domain (KH-domain type I)
SCOP family Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
SCOP family Ribosomal S5 protein, N-terminal domain
SCOP family Double-stranded RNA-binding domain (dsRBD)
SCOP family RecA protein, C-terminal domain
SCOP family Elongation factor Ts (EF-Ts), dimerisation domain
SCOP family NadC N-terminal domain-like
SCOP family 4HBT-like
SCOP family Ribosomal protein S16
SCOP family GreA transcript cleavage factor, C-terminal domain
SCOP family Pilin
SCOP family Diaminopimelate epimerase
SCOP family GMC oxidoreductases
SCOP family Translation initiation factor IF3, N-terminal domain
SCOP family 2Fe-2S ferredoxin domains from multidomain proteins
SCOP family 2Fe-2S ferredoxin-related
SCOP family ThiS
SCOP family RNase P protein
SCOP family HIT (HINT, histidine triad) family of protein kinase-interacting proteins
SCOP family L23p
SCOP family Penicillin-binding protein 2x (pbp-2x), c-terminal domain
SCOP family LysM domain
SCOP family Papain-like
SCOP family Bacterial muramidase, catalytic domain
SCOP family TroA-like
SCOP family Phosphoglucomutase, first 3 domains
SCOP family Aspartate/glutamate racemase
SCOP family Thiamin biosynthesis kinases
SCOP family Carboxylesterase/thioesterase 1
SCOP family Carbon-carbon bond hydrolase
SCOP family Dienelactone hydrolase
SCOP family Spore coat polysaccharide biosynthesis protein SpsA
SCOP family Chemotaxis receptor methyltransferase CheR, C-terminal domain
SCOP family COMT-like
SCOP family Integrin A (or I) domain
SCOP family Cofactor-dependent phosphoglycerate mutase
SCOP family Folylpolyglutamate synthetase, C-terminal domain
SCOP family MurCDEF C-terminal domain
SCOP family Tetrahydrofolate dehydrogenase/cyclohydrolase
SCOP family Pancreatic carboxypeptidases
SCOP family Methylated DNA-protein cysteine methyltransferase domain
SCOP family DNA repair protein MutS, domain II
SCOP family RuvC resolvase
SCOP family Pyruvate kinase, C-terminal domain
SCOP family Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
SCOP family Thioltransferase
SCOP family Histone deacetylase, HDAC
SCOP family Methylesterase CheB, C-terminal domain
SCOP family Phosphoribulokinase/pantothenate kinase
SCOP family Shikimate kinase (AroK)
SCOP family Deoxyhypusine synthase, DHS
SCOP family D-Alanine ligase N-terminal domain
SCOP family Universal stress protein-like
SCOP family ETFP subunits
SCOP family UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
SCOP family Reductases
SCOP family Catalase, C-terminal domain
SCOP family L-alanine dehydrogenase-like
SCOP family Formate/glycerate dehydrogenases, substrate-binding domain
SCOP family Beta-D-glucan exohydrolase, C-terminal domain
SCOP family Acetylhydrolase
SCOP family Initiation factor IF2/eIF5b, domain 3
SCOP family DNA ligase
SCOP family Anti-sigma factor antagonist SpoIIaa
SCOP family MurCD N-terminal domain
SCOP family N-terminal domain of adrenodoxin reductase-like
SCOP family Methyltetrahydrofolate-utiluzing methyltransferases
SCOP family Pyruvate phosphate dikinase, C-terminal domain
SCOP family Decarboxylase
SCOP family Epsilon subunit of F1F0-ATP synthase N-terminal domain
SCOP family Type 1 signal peptidase
SCOP family AFP III-like domain
SCOP family Regulatory protein AraC
SCOP family cAMP-binding domain
SCOP family Penicillin synthase-like
SCOP family Homogentisate dioxygenase
SCOP family Type I phosphomannose isomerase
SCOP family gamma-carbonic anhydrase-like
SCOP family Galactoside acetyltransferase-like
SCOP family Pectate lyase-like
SCOP family Head domain of nucleotide exchange factor GrpE
SCOP family alpha-Amylases, C-terminal beta-sheet domain
SCOP family Quinoprotein alcohol dehydrogenase-like
SCOP family WD40-repeat
SCOP family Tachylectin-2
SCOP family Retinol binding protein-like
SCOP family Pyruvate kinase beta-barrel domain
SCOP family Ribosomal protein L25-like
SCOP family Post formyltransferase domain
SCOP family NADH:FMN oxidoreductase-like
SCOP family DNA ligase/mRNA capping enzyme postcatalytic domain
SCOP family Myf domain
SCOP family DNA helicase RuvA subunit, N-terminal domain
SCOP family Anticodon-binding domain
SCOP family GroES
SCOP family eIF5a N-terminal domain-like
SCOP family Ribosomal proteins L24p and L21e
SCOP family SH3-domain
SCOP family FeoA-like
SCOP family Rieske iron-sulfur protein (ISP)
SCOP family beta-Galactosidase, domain 5
SCOP family FHA domain
SCOP family Galactose-binding domain
SCOP family HSP20
SCOP family Periplasmic domain of cytochrome c oxidase subunit II
SCOP family HSP40/DnaJ peptide-binding domain
SCOP family Cna protein B-type domain
SCOP family Carboxypeptidase regulatory domain
SCOP family Cellulose-binding domain family III
SCOP family Invasin/intimin cell-adhesion fragments
SCOP family Purple acid phosphatase, N-terminal domain
SCOP family Cadherin
SCOP family beta-Galactosidase/glucuronidase domain
SCOP family PKD domain
SCOP family Fibronectin type III
SCOP family P1 nuclease
SCOP family Tetracyclin repressor-like, C-terminal domain
SCOP family Tetratricopeptide repeat (TPR)
SCOP family Ankyrin repeat
SCOP family Ribosomal protein L7/12, oligomerisation (N-terminal) domain
SCOP family Cytochrome P450
SCOP family Alginate lyase A1-III
SCOP family Cellulases catalytic domain
SCOP family Glycerol-3-phosphate dehydrogenase
SCOP family UDP-glucose/GDP-mannose dehydrogenase dimerisation domain
SCOP family HCDH C-domain-like
SCOP family Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI)
SCOP family R1 subunit of ribonucleotide reductase, N-terminal domain
SCOP family C-terminal domain of glutamyl-tRNA synthetase (GluRS)
SCOP family DNA repair glycosylase, 2 C-terminal domains
SCOP family N-terminal domain of DnaB helicase
SCOP family Antitermination factor NusB
SCOP family GntR ligand-binding domain-like
SCOP family Iron-dependent repressor protein, dimerization domain
SCOP family N-terminal domain of the delta subunit of the F1F0-ATP synthase
SCOP family lambda integrase-like, N-terminal domain
SCOP family HRDC domain from helicases
SCOP family 5' to 3' exonuclease, C-terminal subdomain
SCOP family DNA polymerase beta, N-terminal domain-like
SCOP family C-terminal domain of RNA polymerase alpha subunit
SCOP family DNA helicase RuvA subunit, middle domain
SCOP family Prokaryotic DNA-bending protein
SCOP family Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
SCOP family GalR/LacI-like bacterial regulator
SCOP family Homodimeric domain of signal transducing histidine kinase
SCOP family Bromodomain
SCOP family Domain of the SRP/SRP receptor G-proteins
SCOP family Peptidyl carrier domain
SCOP family Acyl-carrier protein (ACP)
SCOP family HSC20 (HSCB), C-terminal oligomerisation domain
SCOP family Ribosomal protein S15
SCOP family Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
SCOP family Ribosomal protein S20
SCOP family DNA-binding N-terminal domain of transcription activators
SCOP family Domains B1 and B5 of PheRS-beta, PheT
SCOP family DNA helicase RuvA subunit, C-terminal domain
SCOP family Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
SCOP family Ribosomal protein S18
SCOP family Ribosomal protein L11, C-terminal domain
SCOP family GerE-like (LuxR/UhpA family of transcriptional regulators)
SCOP family PhoB-like
SCOP family Helicase DNA-binding domain
SCOP family GntR-like transcriptional regulators
SCOP family Methylated DNA-protein cysteine methyltransferase, C-terminal domain
SCOP family Tetracyclin repressor-like, N-terminal domain
SCOP family AraC type transcriptional activator
SCOP family Di-heme cytochrome c peroxidase
SCOP family monodomain cytochrome c
SCOP family C-terminal UvrC-binding domain of UvrB
SCOP family Chaperone J-domain
SCOP family Ribosomal protein L29 (L29p)
SCOP family GreA transcript cleavage protein, N-terminal domain
SCOP family Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
SCOP family Truncated hemoglobin

Jump to [ Top of page · Assignment statistics ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.