SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > Genomes > Superfamily assignments for Shewanella sediminis HAW-EB3


Shewanella sediminis HAW-EB3 superfamily assignments

Taxonomy
Taxonomy browser entry

Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella; Shewanella sediminis; Shewanella sediminis HAW-EB3

Downloads
Fasta format sequences
Domain assignments

Jump to [ Top of page · Domain assignments ]

Assignment statistics

Sequences: 4497 total
3237 (72 %) with assignment
339 average length
64 % amino acid coverage
Domains: 4828 total
761 unique superfamilies
752 unique families
300 average length
6.3 average superfamily size
84 % formed by duplication
Domain combinations: 551 domain pairs
1268 unique architectures

Jump to [ Top of page · Assignment statistics ]

Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies
276 244 75 10 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
144 140 15 1 SCOP 53850 Periplasmic binding protein-like II
134 132 21 5 SCOP 46785 "Winged helix" DNA-binding domain
95 93 33 8 SCOP 51735 NAD(P)-binding Rossmann-fold domains
92 83 31 1 SCOP 52172 CheY-like
76 73 22 0 SCOP 46689 Homeodomain-like
76 76 31 2 SCOP 55073 Nucleotide cyclase
69 68 12 15 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
66 64 7 1 SCOP 48695 Multiheme cytochromes
64 61 6 2 SCOP 56935 Porins
63 63 34 3 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
60 22 4 1 SCOP 82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
54 41 30 0 SCOP 55785 PYP-like sensor domain (PAS domain)
53 53 11 8 SCOP 53474 alpha/beta-Hydrolases
52 28 6 1 SCOP 82866 Multidrug efflux transporter AcrB transmembrane domain
51 48 21 5 SCOP 51905 FAD/NAD(P)-binding domain
49 48 8 4 SCOP 52833 Thioredoxin-like
45 45 22 0 SCOP 47384 Homodimeric domain of signal transducing histidine kinase
44 22 4 1 SCOP 82714 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
42 32 19 4 SCOP 50249 Nucleic acid-binding proteins
42 42 9 3 SCOP 54862 4Fe-4S ferredoxins
42 35 12 2 SCOP 48452 TPR-like
41 41 4 1 SCOP 46894 C-terminal effector domain of the bipartite response regulators
38 36 3 0 SCOP 103473 MFS general substrate transporter
38 38 6 3 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
37 37 6 1 SCOP 58104 Methyl-accepting chemotaxis protein (MCP) signaling domain
36 32 17 1 SCOP 109604 HD-domain/PDEase-like
36 28 6 1 SCOP 111369 HlyD-like secretion proteins
35 20 8 4 SCOP 53067 Actin-like ATPase domain
35 34 3 5 SCOP 53383 PLP-dependent transferases
32 25 5 5 SCOP 54637 Thioesterase/thiol ester dehydrase-isomerase
31 26 10 4 SCOP 52402 Adenine nucleotide alpha hydrolases-like
28 17 11 8 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
26 23 18 7 SCOP 54211 Ribosomal protein S5 domain 2-like
26 26 3 3 SCOP 102114 Radical SAM enzymes
26 23 13 4 SCOP 52096 ClpP/crotonase
26 14 4 2 SCOP 53901 Thiolase-like
25 18 14 1 SCOP 55021 ACT-like
23 23 4 4 SCOP 53448 Nucleotide-diphospho-sugar transferases
23 23 13 0 SCOP 141868 EAL domain-like
23 23 5 1 SCOP 54523 Pili subunits
22 22 8 5 SCOP 53098 Ribonuclease H-like
21 21 8 4 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
21 21 8 3 SCOP 53187 Zn-dependent exopeptidases
21 14 8 2 SCOP 46626 Cytochrome c
21 13 5 0 SCOP 103481 Multidrug resistance efflux transporter EmrE
20 20 9 4 SCOP 52317 Class I glutamine amidotransferase-like
19 19 5 4 SCOP 55120 Pseudouridine synthase
19 18 9 2 SCOP 54534 FKBP-like
19 18 15 1 SCOP 55781 GAF domain-like
19 19 4 1 SCOP 50692 ADC-like
19 19 4 1 SCOP 53706 Formate dehydrogenase/DMSO reductase, domains 1-3
18 16 4 0 SCOP 161098 MetI-like
18 18 12 4 SCOP 52374 Nucleotidylyl transferase
18 17 6 3 SCOP 51182 RmlC-like cupins
17 17 6 6 SCOP 56784 HAD-like
17 16 3 3 SCOP 54593 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
17 16 7 1 SCOP 82171 DPP6 N-terminal domain-like
16 15 12 3 SCOP 56059 Glutathione synthetase ATP-binding domain-like
16 16 5 6 SCOP 51569 Aldolase
16 16 8 2 SCOP 56300 Metallo-dependent phosphatases
16 16 4 2 SCOP 52218 Flavoproteins
16 14 5 5 SCOP 100950 NagB/RpiA/CoA transferase-like
16 15 8 0 SCOP 52821 Rhodanese/Cell cycle control phosphatase
16 16 6 5 SCOP 56281 Metallo-hydrolase/oxidoreductase
16 16 10 0 SCOP 54631 CBS-domain pair
16 12 4 1 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
16 7 4 2 SCOP 63411 LuxS/MPP-like metallohydrolase
16 13 6 5 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
15 15 6 6 SCOP 51556 Metallo-dependent hydrolases
15 15 3 6 SCOP 51161 Trimeric LpxA-like enzymes
15 15 2 1 SCOP 56801 Acetyl-CoA synthetase-like
15 12 3 1 SCOP 54427 NTF2-like
15 15 9 0 SCOP 158472 HAMP domain-like
14 14 5 1 SCOP 56112 Protein kinase-like (PK-like)
14 14 3 2 SCOP 53720 ALDH-like
14 14 1 2 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
14 13 8 3 SCOP 56601 beta-lactamase/transpeptidase-like
13 13 10 3 SCOP 55681 Class II aaRS and biotin synthetases
13 13 5 1 SCOP 51395 FMN-linked oxidoreductases
13 12 9 2 SCOP 50447 Translation proteins
13 11 8 1 SCOP 51230 Single hybrid motif
13 12 9 2 SCOP 81301 Nucleotidyltransferase
13 11 9 1 SCOP 46548 alpha-helical ferredoxin
13 8 6 1 SCOP 54980 EF-G C-terminal domain-like
13 13 6 4 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
13 11 7 2 SCOP 63380 Riboflavin synthase domain-like
12 12 2 1 SCOP 53167 Purine and uridine phosphorylases
12 12 4 0 SCOP 56925 OMPA-like
11 6 2 1 SCOP 47336 ACP-like
11 11 3 2 SCOP 55174 Alpha-L RNA-binding motif
11 11 8 0 SCOP 47226 Histidine-containing phosphotransfer domain, HPT domain
11 11 4 4 SCOP 53649 Alkaline phosphatase-like
11 11 3 4 SCOP 54909 Dimeric alpha+beta barrel
11 11 5 1 SCOP 47413 lambda repressor-like DNA-binding domains
11 11 3 1 SCOP 88946 Sigma2 domain of RNA polymerase sigma factors
11 9 8 0 SCOP 50156 PDZ domain-like
11 11 6 1 SCOP 56425 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
10 10 3 1 SCOP 53790 Tetrapyrrole methylase
10 10 6 2 SCOP 54292 2Fe-2S ferredoxin-like
10 10 6 4 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
10 10 3 1 SCOP 81342 Transmembrane di-heme cytochromes
10 10 2 1 SCOP 52091 SpoIIaa-like
10 10 5 1 SCOP 51206 cAMP-binding domain-like
10 10 4 4 SCOP 52467 DHS-like NAD/FAD-binding domain
10 10 9 2 SCOP 53955 Lysozyme-like
10 10 3 1 SCOP 103088 OmpA-like
10 10 2 1 SCOP 89155 TorD-like
10 8 7 0 SCOP 103190 Sensory domain-like
10 9 6 2 SCOP 52440 PreATP-grasp domain
9 9 6 1 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
9 8 3 2 SCOP 50129 GroES-like
9 9 6 4 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
9 8 2 1 SCOP 64518 Phase 1 flagellin
9 9 2 2 SCOP 56796 Dehydroquinate synthase-like
9 9 5 1 SCOP 50341 CheW-like
9 9 3 0 SCOP 81901 HCP-like
9 7 4 0 SCOP 51338 Composite domain of metallo-dependent hydrolases
9 9 3 1 SCOP 56645 Acyl-CoA dehydrogenase NM domain-like
9 9 2 1 SCOP 118215 Proton glutamate symport protein
9 5 4 0 SCOP 56024 Phospholipase D/nuclease
9 9 1 1 SCOP 47616 GST C-terminal domain-like
9 9 3 1 SCOP 47203 Acyl-CoA dehydrogenase C-terminal domain-like
9 9 6 1 SCOP 52343 Ferredoxin reductase-like, C-terminal NADP-linked domain
9 3 2 0 SCOP 53738 Phosphoglucomutase, first 3 domains
8 8 3 2 SCOP 53271 PRTase-like
8 7 4 4 SCOP 53927 Cytidine deaminase-like
8 8 5 3 SCOP 53613 Ribokinase-like
8 8 4 4 SCOP 75217 alpha/beta knot
8 8 2 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
8 8 3 1 SCOP 55811 Nudix
8 8 5 1 SCOP 52151 FabD/lysophospholipase-like
8 8 5 1 SCOP 56349 DNA breaking-rejoining enzymes
8 8 2 1 SCOP 56954 Outer membrane efflux proteins (OEP)
8 8 3 1 SCOP 53822 Periplasmic binding protein-like I
8 7 7 1 SCOP 47781 RuvA domain 2-like
8 5 4 0 SCOP 116726 TrkA C-terminal domain-like
7 6 2 4 SCOP 51366 Ribulose-phoshate binding barrel
7 7 4 3 SCOP 50104 Translation proteins SH3-like domain
7 7 3 5 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
7 7 6 2 SCOP 53633 Carbamate kinase-like
7 7 2 2 SCOP 48557 L-aspartase-like
7 7 3 1 SCOP 51261 Duplicated hybrid motif
7 7 4 1 SCOP 50182 Sm-like ribonucleoproteins
7 7 4 2 SCOP 56672 DNA/RNA polymerases
7 7 5 0 SCOP 46955 Putative DNA-binding domain
7 7 4 1 SCOP 50494 Trypsin-like serine proteases
7 7 2 1 SCOP 90123 ABC transporter transmembrane region
7 7 5 1 SCOP 56176 FAD-binding/transporter-associated domain-like
7 7 5 3 SCOP 52922 TK C-terminal domain-like
7 3 2 0 SCOP 49373 Invasin/intimin cell-adhesion fragments
7 4 4 0 SCOP 49299 PKD domain
6 6 2 0 SCOP 69593 Glycerol-3-phosphate (1)-acyltransferase
6 6 4 3 SCOP 52980 Restriction endonuclease-like
6 6 2 1 SCOP 51316 Mss4-like
6 6 3 3 SCOP 48150 DNA-glycosylase
6 6 3 1 SCOP 117143 Flagellar hook protein flgE
6 4 4 0 SCOP 63829 Calcium-dependent phosphotriesterase
6 6 3 1 SCOP 54001 Cysteine proteinases
6 6 3 2 SCOP 51197 Clavaminate synthase-like
6 6 3 2 SCOP 52283 Formate/glycerate dehydrogenase catalytic domain-like
6 3 3 0 SCOP 57783 Zinc beta-ribbon
6 6 4 0 SCOP 53300 vWA-like
6 6 2 3 SCOP 54913 GlnB-like
6 6 4 1 SCOP 56219 DNase I-like
6 6 5 1 SCOP 88697 PUA domain-like
6 5 3 2 SCOP 52777 CoA-dependent acyltransferases
6 6 3 1 SCOP 53244 MurD-like peptide ligases, peptide-binding domain
6 6 6 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
6 6 3 4 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
6 4 4 0 SCOP 54106 LysM domain
6 6 6 1 SCOP 51971 Nucleotide-binding domain
6 6 3 0 SCOP 51215 Regulatory protein AraC
6 6 3 2 SCOP 53623 MurD-like peptide ligases, catalytic domain
6 5 2 1 SCOP 56042 PurM C-terminal domain-like
6 5 2 1 SCOP 55326 PurM N-terminal domain-like
6 6 2 0 SCOP 117892 Band 7/SPFH domain
6 6 1 1 SCOP 55031 Bacterial exopeptidase dimerisation domain
5 5 4 3 SCOP 53697 SIS domain
5 5 4 1 SCOP 55920 Creatinase/aminopeptidase
5 5 2 2 SCOP 64182 DHH phosphoesterases
5 5 2 3 SCOP 47240 Ferritin-like
5 5 3 2 SCOP 55821 YrdC/RibB
5 5 1 0 SCOP 53254 Phosphoglycerate mutase-like
5 5 1 1 SCOP 75169 DsrEFH-like
5 5 2 2 SCOP 50891 Cyclophilin-like
5 5 2 0 SCOP 48317 Acid phosphatase/Vanadium-dependent haloperoxidase
5 5 5 1 SCOP 53328 Formyltransferase
5 4 4 0 SCOP 50630 Acid proteases
5 4 3 3 SCOP 54506 Diaminopimelate epimerase-like
5 4 3 1 SCOP 55620 Tetrahydrobiopterin biosynthesis enzymes-like
5 5 4 1 SCOP 81324 Voltage-gated potassium channels
5 5 4 0 SCOP 103642 Sec-C motif
5 5 2 3 SCOP 51998 PFL-like glycyl radical enzymes
5 3 2 0 SCOP 141571 Pentapeptide repeat-like
5 5 3 0 SCOP 55718 SCP-like
5 5 4 2 SCOP 52016 LeuD/IlvD-like
5 5 4 2 SCOP 53218 Molybdenum cofactor biosynthesis proteins
5 5 3 0 SCOP 50998 Quinoprotein alcohol dehydrogenase-like
5 5 2 1 SCOP 55826 YbaK/ProRS associated domain
5 5 1 1 SCOP 48008 GntR ligand-binding domain-like
5 5 1 0 SCOP 48498 Tetracyclin repressor-like, C-terminal domain
5 5 3 1 SCOP 51246 Rudiment single hybrid motif
5 5 3 1 SCOP 55816 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
5 5 4 1 SCOP 54373 FAD-linked reductases, C-terminal domain
4 4 1 1 SCOP 51658 Xylose isomerase-like
4 4 1 1 SCOP 47729 IHF-like DNA-binding proteins
4 4 4 2 SCOP 109998 Triger factor/SurA peptide-binding domain-like
4 4 1 1 SCOP 55298 YjgF-like
4 4 3 2 SCOP 51419 PLP-binding barrel
4 4 4 1 SCOP 49785 Galactose-binding domain-like
4 4 2 0 SCOP 56317 Carbon-nitrogen hydrolase
4 4 1 3 SCOP 52972 ITPase-like
4 4 1 2 SCOP 81343 Fumarate reductase respiratory complex transmembrane subunits
4 4 1 2 SCOP 88713 Glycoside hydrolase/deacetylase
4 4 2 1 SCOP 52266 SGNH hydrolase
4 4 3 2 SCOP 55931 Glutamine synthetase/guanido kinase
4 4 2 0 SCOP 143422 Transposase IS200-like
4 4 1 1 SCOP 53807 "Helical backbone" metal receptor
4 4 2 0 SCOP 160246 EspE N-terminal domain-like
4 4 2 1 SCOP 161111 Cation efflux protein transmembrane domain-like
4 4 2 0 SCOP 82689 Mechanosensitive channel protein MscS (YggB), C-terminal domain
4 3 3 1 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
4 4 2 1 SCOP 143631 ApbE-like
4 4 2 0 SCOP 101801 Surface presentation of antigens (SPOA)
4 3 3 1 SCOP 81593 Nucleotidyltransferase substrate binding subunit/domain
4 4 2 0 SCOP 50331 MOP-like
4 4 1 1 SCOP 69754 Ribosome binding protein Y (YfiA homologue)
4 4 4 0 SCOP 103039 CheC-like
4 4 3 1 SCOP 141371 PilZ domain-like
4 4 3 1 SCOP 46565 Chaperone J-domain
4 4 3 0 SCOP 141523 L,D-transpeptidase catalytic domain-like
4 3 3 0 SCOP 69318 Integrin alpha N-terminal domain
4 3 3 1 SCOP 56014 Nitrite and sulphite reductase 4Fe-4S domain-like
4 4 4 1 SCOP 56719 Type II DNA topoisomerase
4 2 1 0 SCOP 53681 Aspartate/glutamate racemase
4 3 3 1 SCOP 52210 Succinyl-CoA synthetase domains
4 2 1 1 SCOP 48029 FliG
4 4 3 0 SCOP 47090 PGBD-like
4 4 2 0 SCOP 51120 beta-Roll
4 4 2 0 SCOP 82861 Mechanosensitive channel protein MscS (YggB), transmembrane region
4 4 3 1 SCOP 81271 TGS-like
4 4 2 0 SCOP 47005 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
3 3 2 0 SCOP 57829 Zn-binding ribosomal proteins
3 3 2 0 SCOP 81606 PP2C-like
3 2 2 2 SCOP 54197 HIT-like
3 2 2 0 SCOP 56214 4'-phosphopantetheinyl transferase
3 3 1 1 SCOP 75620 Release factor
3 3 2 1 SCOP 82784 OsmC-like
3 3 2 1 SCOP 89360 HesB-like domain
3 3 1 0 SCOP 54285 MoaD/ThiS
3 3 1 1 SCOP 56655 Carbohydrate phosphatase
3 3 1 1 SCOP 81345 ABC transporter involved in vitamin B12 uptake, BtuC
3 3 2 2 SCOP 52949 Macro domain-like
3 3 2 1 SCOP 55469 FMN-dependent nitroreductase-like
3 2 2 2 SCOP 51726 UROD/MetE-like
3 3 3 1 SCOP 88723 PIN domain-like
3 3 1 1 SCOP 56322 ADC synthase
3 3 3 3 SCOP 51445 (Trans)glycosidases
3 3 1 1 SCOP 69572 Activating enzymes of the ubiquitin-like proteins
3 3 1 1 SCOP 56752 D-aminoacid aminotransferase-like PLP-dependent enzymes
3 3 2 2 SCOP 74650 Galactose mutarotase-like
3 3 3 2 SCOP 51306 LexA/Signal peptidase
3 3 1 1 SCOP 51645 Malate synthase G
3 2 2 0 SCOP 47819 HRDC-like
3 3 2 0 SCOP 51126 Pectin lyase-like
3 3 2 0 SCOP 111126 Ligand-binding domain in the NO signalling and Golgi transport
3 3 2 1 SCOP 81442 Cytochrome c oxidase subunit I-like
3 3 1 1 SCOP 53800 Chelatase
3 3 3 1 SCOP 52954 Class II aaRS ABD-related
3 3 2 1 SCOP 102405 MCP/YpsA-like
3 3 3 1 SCOP 51717 Dihydropteroate synthetase-like
3 3 3 1 SCOP 47598 Ribbon-helix-helix
3 3 1 1 SCOP 55083 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
3 3 3 1 SCOP 89550 PHP domain-like
3 3 2 1 SCOP 55154 CYTH-like phosphatases
3 3 2 1 SCOP 50800 PK beta-barrel domain-like
3 3 3 1 SCOP 53732 Aconitase iron-sulfur domain
3 3 2 0 SCOP 50952 Soluble quinoprotein glucose dehydrogenase
3 3 1 1 SCOP 158442 DsbB-like
3 3 2 1 SCOP 89392 Prokaryotic lipoproteins and lipoprotein localization factors
3 2 2 0 SCOP 101386 all-alpha NTP pyrophosphatases
3 3 3 1 SCOP 50486 FMT C-terminal domain-like
3 3 1 0 SCOP 74653 TolA/TonB C-terminal domain
3 3 2 1 SCOP 52738 Methylesterase CheB, C-terminal domain
3 3 1 0 SCOP 111364 Tsx-like channel
3 3 2 0 SCOP 53092 Creatinase/prolidase N-terminal domain
3 3 2 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
3 3 2 1 SCOP 55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
3 3 3 1 SCOP 52743 Subtilisin-like
3 3 2 0 SCOP 46589 tRNA-binding arm
3 1 1 1 SCOP 55979 DNA clamp
3 3 2 0 SCOP 55103 FAD-linked oxidases, C-terminal domain
3 3 2 1 SCOP 81923 Double Clp-N motif
3 3 2 0 SCOP 160544 EscU C-terminal domain-like
3 3 2 1 SCOP 48019 post-AAA+ oligomerization domain-like
3 3 3 0 SCOP 52009 Phosphohistidine domain
3 1 1 1 SCOP 55973 S-adenosylmethionine synthetase
3 3 3 0 SCOP 81665 Calcium ATPase, transmembrane domain M
3 3 3 1 SCOP 52418 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
3 3 2 2 SCOP 50621 Alanine racemase C-terminal domain-like
3 3 1 2 SCOP 55060 GHMP Kinase, C-terminal domain
3 3 3 1 SCOP 46977 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
3 3 2 1 SCOP 63737 Leukotriene A4 hydrolase N-terminal domain
3 3 2 0 SCOP 110997 Sporulation related repeat
3 2 2 0 SCOP 158544 GspK insert domain-like
3 3 3 1 SCOP 47648 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
3 3 1 1 SCOP 51984 MurCD N-terminal domain
3 2 2 1 SCOP 55124 Nitrite/Sulfite reductase N-terminal domain-like
3 3 3 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
3 3 2 0 SCOP 55957 Phosphoglucomutase, C-terminal domain
3 3 2 0 SCOP 52025 PA domain
3 3 1 0 SCOP 47757 Chemotaxis receptor methyltransferase CheR, N-terminal domain
3 3 3 0 SCOP 81653 Calcium ATPase, transduction domain A
3 2 2 1 SCOP 55666 Ribonuclease PH domain 2-like
2 2 2 1 SCOP 48013 NusB-like
2 2 1 0 SCOP 55594 HPr-like
2 2 1 1 SCOP 52141 Uracil-DNA glycosylase-like
2 2 1 1 SCOP 56420 Peptide deformylase
2 2 1 2 SCOP 111331 NAD kinase/diacylglycerol kinase-like
2 2 1 1 SCOP 53137 Translational machinery components
2 2 2 1 SCOP 46946 S13-like H2TH domain
2 2 2 1 SCOP 53597 Dihydrofolate reductase-like
2 2 1 2 SCOP 143800 L28p-like
2 2 1 1 SCOP 75625 YebC-like
2 2 1 2 SCOP 82649 SufE/NifU
2 2 2 1 SCOP 55068 Peptide methionine sulfoxide reductase
2 2 1 1 SCOP 109755 PhoU-like
2 2 1 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
2 2 2 2 SCOP 51730 FAD-linked oxidoreductase
2 2 1 1 SCOP 111283 Putative modulator of DNA gyrase, PmbA/TldD
2 2 2 2 SCOP 50715 Ribosomal protein L25-like
2 2 2 1 SCOP 142695 RibA-like
2 2 1 1 SCOP 55205 EPT/RTPC-like
2 2 1 0 SCOP 140566 FlgN-like
2 2 1 1 SCOP 82657 BolA-like
2 2 1 1 SCOP 64307 SirA-like
2 2 1 1 SCOP 48576 Terpenoid synthases
2 2 1 0 SCOP 49764 HSP20-like chaperones
2 2 2 0 SCOP 48371 ARM repeat
2 2 2 2 SCOP 50475 FMN-binding split barrel
2 2 1 1 SCOP 48256 Citrate synthase
2 2 1 0 SCOP 52799 (Phosphotyrosine protein) phosphatases II
2 2 1 1 SCOP 56634 Heme-dependent catalase-like
2 2 1 1 SCOP 53590 Nucleoside hydrolase
2 2 1 0 SCOP 48403 Ankyrin repeat
2 2 1 0 SCOP 48208 Six-hairpin glycosidases
2 2 2 1 SCOP 56529 FAH
2 2 2 0 SCOP 55008 HMA, heavy metal-associated domain
2 2 1 0 SCOP 55961 Bet v1-like
2 2 1 1 SCOP 52768 Arginase/deacetylase
2 2 1 2 SCOP 55909 Pentein
2 2 1 0 SCOP 46458 Globin-like
2 2 2 1 SCOP 144091 Rhomboid-like
2 2 1 0 SCOP 161084 MAPEG domain-like
2 2 1 0 SCOP 158446 IVS-encoded protein-like
2 2 1 1 SCOP 64438 CNF1/YfiH-like putative cysteine hydrolases
2 2 1 1 SCOP 118196 YaeB-like
2 2 1 0 SCOP 55331 Tautomerase/MIF
2 2 2 0 SCOP 82771 GIY-YIG endonuclease
2 2 2 0 SCOP 117916 Fe-S cluster assembly (FSCA) domain-like
2 2 2 0 SCOP 50022 ISP domain
2 2 2 0 SCOP 46767 Methylated DNA-protein cysteine methyltransferase, C-terminal domain
2 2 1 0 SCOP 55166 Hedgehog/DD-peptidase
2 2 2 1 SCOP 52507 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
2 2 2 1 SCOP 54736 ClpS-like
2 2 1 1 SCOP 50993 Peptidase/esterase 'gauge' domain
2 2 2 1 SCOP 52733 Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
2 2 1 0 SCOP 160935 VPA0735-like
2 2 2 0 SCOP 54975 Acylphosphatase/BLUF domain-like
2 2 2 0 SCOP 48600 Chorismate mutase II
2 2 1 1 SCOP 103025 Folate-binding domain
2 2 2 2 SCOP 52335 Methylglyoxal synthase-like
2 2 2 1 SCOP 48295 TrpR-like
2 2 2 1 SCOP 53323 Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
2 2 2 0 SCOP 50037 C-terminal domain of transcriptional repressors
2 2 1 1 SCOP 161070 SNF-like
2 2 1 0 SCOP 75138 HprK N-terminal domain-like
2 2 2 1 SCOP 64288 Chorismate lyase-like
2 2 1 0 SCOP 101116 Flagellar export chaperone FliS
2 2 1 1 SCOP 101874 YceI-like
2 1 1 1 SCOP 89963 YajQ-like
2 2 1 2 SCOP 51604 Enolase C-terminal domain-like
2 2 2 1 SCOP 55846 N-acetylmuramoyl-L-alanine amidase-like
2 2 1 0 SCOP 101498 Anti-sigma factor FlgM
2 2 2 0 SCOP 55136 Probable bacterial effector-binding domain
2 2 1 0 SCOP 47175 Cytochromes
2 2 1 0 SCOP 54626 Chalcone isomerase
2 2 2 1 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
2 2 1 1 SCOP 89562 RraA-like
2 2 2 1 SCOP 55186 ThrRS/AlaRS common domain
2 2 1 1 SCOP 89946 Hypothetical protein VC0424
2 2 2 0 SCOP 63867 MoeA C-terminal domain-like
2 1 1 1 SCOP 48592 GroEL equatorial domain-like
2 2 2 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
2 2 1 1 SCOP 49772 Ecotin, trypsin inhibitor
2 2 1 0 SCOP 160443 SMR domain-like
2 2 2 0 SCOP 69304 Tricorn protease N-terminal domain
2 2 2 0 SCOP 49344 CBD9-like
2 1 1 0 SCOP 81273 H-NS histone-like proteins
2 2 2 0 SCOP 63848 Cell-division inhibitor MinC, C-terminal domain
2 2 1 0 SCOP 160387 NosL/MerB-like
2 2 2 0 SCOP 55658 L9 N-domain-like
2 2 2 0 SCOP 49265 Fibronectin type III
2 2 1 0 SCOP 82679 N-utilization substance G protein NusG, N-terminal domain
2 2 1 0 SCOP 56436 C-type lectin-like
2 2 2 1 SCOP 56037 PheT/TilS domain
2 2 1 1 SCOP 53671 Aspartate/ornithine carbamoyltransferase
2 2 1 0 SCOP 74853 Lamin A/C globular tail domain
2 2 1 1 SCOP 54826 Enolase N-terminal domain-like
2 2 2 0 SCOP 81891 Poly A polymerase C-terminal region-like
2 2 2 1 SCOP 101904 GyrA/ParC C-terminal domain-like
2 2 1 1 SCOP 143548 Serine metabolism enzymes domain
2 2 2 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
2 2 2 0 SCOP 46600 C-terminal UvrC-binding domain of UvrB
2 2 1 1 SCOP 63418 MurE/MurF N-terminal domain
2 2 2 0 SCOP 103647 TSP type-3 repeat
2 2 2 1 SCOP 63882 MoeA N-terminal region -like
2 2 2 1 SCOP 54768 dsRNA-binding domain-like
2 1 1 0 SCOP 47794 Rad51 N-terminal domain-like
2 2 2 0 SCOP 47831 Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
2 1 1 1 SCOP 56053 Ribosomal protein L6
2 2 1 0 SCOP 52413 UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
2 2 1 1 SCOP 143975 IlvD/EDD N-terminal domain-like
2 2 1 1 SCOP 46557 GreA transcript cleavage protein, N-terminal domain
2 2 2 0 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
2 2 1 0 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 2 1 SCOP 55048 Probable ACP-binding domain of malonyl-CoA ACP transacylase
2 1 1 0 SCOP 49303 beta-Galactosidase/glucuronidase domain
2 2 1 1 SCOP 54368 Glutamine synthetase, N-terminal domain
2 1 1 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
2 1 1 1 SCOP 54713 Elongation factor Ts (EF-Ts), dimerisation domain
2 2 1 1 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 1 1 SCOP 101790 Aminomethyltransferase beta-barrel domain
2 2 1 0 SCOP 56519 Penicillin binding protein dimerisation domain
1 1 1 1 SCOP 56731 DNA primase core
1 1 1 1 SCOP 74982 Small protein B (SmpB)
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 1 SCOP 53178 Peptidyl-tRNA hydrolase-like
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 1 SCOP 46911 Ribosomal protein S18
1 1 1 1 SCOP 142433 CinA-like
1 1 1 1 SCOP 82607 YbaB-like
1 1 1 1 SCOP 89919 Ribosome-binding factor A, RbfA
1 1 1 1 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 1 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
1 1 1 1 SCOP 54570 Ribosomal protein S19
1 1 1 1 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 1 SCOP 55282 RL5-like
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 1 SCOP 52080 Ribosomal proteins L15p and L18e
1 1 1 0 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 1 SCOP 64263 Prokaryotic ribosomal protein L17
1 1 1 0 SCOP 143034 L35p-like
1 1 1 1 SCOP 74731 Ribosomal protein L20
1 1 1 0 SCOP 89447 AbrB/MazE/MraZ-like
1 1 1 1 SCOP 55831 Thymidylate synthase/dCMP hydroxymethylase
1 1 1 1 SCOP 141091 L21p-like
1 1 1 1 SCOP 110324 Ribosomal L27 protein-like
1 1 1 0 SCOP 51695 PLC-like phosphodiesterases
1 1 1 1 SCOP 53748 Phosphoglycerate kinase
1 1 1 0 SCOP 160369 Ribosomal protein L10-like
1 1 1 1 SCOP 46992 Ribosomal protein S20
1 1 1 1 SCOP 52943 ATP synthase (F1-ATPase), gamma subunit
1 1 1 0 SCOP 81333 F1F0 ATP synthase subunit C
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 1 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 1 SCOP 55194 Ribosome recycling factor, RRF
1 1 1 1 SCOP 54565 Ribosomal protein S16
1 1 1 1 SCOP 69765 IpsF-like
1 1 1 1 SCOP 54611 SecB-like
1 1 1 1 SCOP 103263 Chorismate synthase, AroC
1 1 1 1 SCOP 51283 dUTPase-like
1 1 1 1 SCOP 111337 QueA-like
1 1 1 1 SCOP 51713 tRNA-guanine transglycosylase
1 1 1 1 SCOP 56770 HydA/Nqo6-like
1 1 1 1 SCOP 51412 Inosine monophosphate dehydrogenase (IMPDH)
1 1 1 0 SCOP 56276 S-adenosylmethionine decarboxylase
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 1 SCOP 64005 Undecaprenyl diphosphate synthase
1 1 1 1 SCOP 101322 YcfC-like
1 1 1 1 SCOP 102705 NIF3 (NGG1p interacting factor 3)-like
1 1 1 0 SCOP 55229 Cell division protein MinE topological specificity domain
1 1 1 1 SCOP 52304 Type II 3-dehydroquinate dehydratase
1 1 1 1 SCOP 117130 CsrA-like
1 1 1 1 SCOP 54060 His-Me finger endonucleases
1 1 1 0 SCOP 50685 Barwin-like endoglucanases
1 1 1 1 SCOP 52121 Lumazine synthase
1 1 1 0 SCOP 69721 DsrC, the gamma subunit of dissimilatory sulfite reductase
1 1 1 1 SCOP 81452 Cytochrome c oxidase subunit III-like
1 1 1 0 SCOP 117991 YbeD/HP0495-like
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 1 SCOP 111148 YggX-like
1 1 1 1 SCOP 54995 Ribosomal protein S6
1 1 1 1 SCOP 55387 Frataxin/Nqo15-like
1 1 1 1 SCOP 56104 SAICAR synthase-like
1 1 1 0 SCOP 89957 MTH1187/YkoF-like
1 1 1 0 SCOP 47473 EF-hand
1 1 1 1 SCOP 51430 NAD(P)-linked oxidoreductase
1 1 1 0 SCOP 50978 WD40 repeat-like
1 1 1 0 SCOP 55315 L30e-like
1 1 1 0 SCOP 110296 Oligoxyloglucan reducing end-specific cellobiohydrolase
1 1 1 0 SCOP 81296 E set domains
1 1 1 1 SCOP 69500 DTD-like
1 1 1 1 SCOP 102886 Coproporphyrinogen III oxidase
1 1 1 0 SCOP 52499 Isochorismatase-like hydrolases
1 1 1 0 SCOP 55144 LigT-like
1 1 1 0 SCOP 55248 PCD-like
1 1 1 0 SCOP 54897 Protease propeptides/inhibitors
1 1 1 1 SCOP 53774 Glutaminase/Asparaginase
1 1 1 0 SCOP 54928 RNA-binding domain, RBD
1 1 1 1 SCOP 54919 Nucleoside diphosphate kinase, NDK
1 1 1 0 SCOP 110849 ParB/Sulfiredoxin
1 1 1 1 SCOP 82282 Homocysteine S-methyltransferase
1 1 1 1 SCOP 53056 beta-carbonic anhydrase, cab
1 1 1 1 SCOP 55257 RBP11-like subunits of RNA polymerase
1 1 1 0 SCOP 64153 YjeF N-terminal domain-like
1 1 1 0 SCOP 55159 eIF1-like
1 1 1 0 SCOP 69618 HemD-like
1 1 1 0 SCOP 143447 AMMECR1-like
1 1 1 0 SCOP 52058 L domain-like
1 1 1 0 SCOP 52788 Phosphotyrosine protein phosphatases I
1 1 1 0 SCOP 63562 RPB6/omega subunit-like
1 1 1 1 SCOP 63965 Precorrin-8X methylmutase CbiC/CobH
1 1 1 0 SCOP 141734 HisI-like
1 1 1 0 SCOP 81648 a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
1 1 1 0 SCOP 101478 ADP-ribosylglycohydrolase
1 1 1 0 SCOP 49478 Cna protein B-type domain
1 1 1 0 SCOP 111038 YjbQ-like
1 1 1 1 SCOP 55040 Molybdenum cofactor biosynthesis protein C, MoaC
1 1 1 0 SCOP 69118 AhpD-like
1 1 1 1 SCOP 53795 PEP carboxykinase-like
1 1 1 0 SCOP 102712 JAB1/MPN domain
1 1 1 0 SCOP 143120 YefM-like
1 1 1 1 SCOP 52255 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
1 1 1 1 SCOP 143011 RelE-like
1 1 1 1 SCOP 111352 Ammonium transporter
1 1 1 1 SCOP 142754 NadA-like
1 1 1 1 SCOP 82697 PurS-like
1 1 1 1 SCOP 56524 Oxidoreductase molybdopterin-binding domain
1 1 1 1 SCOP 49503 Cupredoxins
1 1 1 1 SCOP 64167 SurE-like
1 1 1 0 SCOP 158682 TerB-like
1 1 1 0 SCOP 110857 Gamma-glutamyl cyclotransferase-like
1 1 1 1 SCOP 63892 Pyridoxine 5'-phosphate synthase
1 1 1 1 SCOP 81340 Clc chloride channel
1 1 1 1 SCOP 54690 Molybdopterin synthase subunit MoaE
1 1 1 1 SCOP 56762 HydB/Nqo4-like
1 1 1 0 SCOP 116842 XseB-like
1 1 1 1 SCOP 110399 ThiG-like
1 1 1 1 SCOP 111304 Recombination protein RecR
1 1 1 0 SCOP 69065 RNase III domain-like
1 1 1 1 SCOP 55200 Translation initiation factor IF3, C-terminal domain
1 1 1 1 SCOP 159245 AttH-like
1 1 1 0 SCOP 158997 Trm112p-like
1 1 1 0 SCOP 102829 Cell division protein ZapA-like
1 1 1 0 SCOP 51391 Thiamin phosphate synthase
1 1 1 1 SCOP 143456 VC0467-like
1 1 1 0 SCOP 50969 YVTN repeat-like/Quinoprotein amine dehydrogenase
1 1 1 1 SCOP 102400 DNA polymerase III chi subunit
1 1 1 1 SCOP 89095 GatB/YqeY motif
1 1 1 0 SCOP 109910 YgfY-like
1 1 1 0 SCOP 101307 YutG-like
1 1 1 0 SCOP 110087 DR1885-like metal-binding protein
1 1 1 0 SCOP 159664 CobE/GbiG C-terminal domain-like
1 1 1 0 SCOP 102588 LmbE-like
1 1 1 1 SCOP 89796 CoA-transferase family III (CaiB/BaiF)
1 1 1 1 SCOP 110069 ApaG-like
1 1 1 0 SCOP 140478 LemA-like
1 1 1 0 SCOP 55604 Glucose permease domain IIB
1 1 1 1 SCOP 55804 Phoshotransferase/anion transport protein
1 1 1 1 SCOP 110581 Indigoidine synthase A-like
1 1 1 0 SCOP 140931 Fic-like
1 1 1 1 SCOP 56821 Prismane protein-like
1 1 1 0 SCOP 57802 Rubredoxin-like
1 1 1 0 SCOP 69322 Tricorn protease domain 2
1 1 1 1 SCOP 117457 FumA C-terminal domain-like
1 1 1 0 SCOP 111384 OmpH-like
1 1 1 1 SCOP 56507 Methionine synthase activation domain-like
1 1 1 0 SCOP 53182 Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
1 1 1 1 SCOP 52242 Cobalamin (vitamin B12)-binding domain
1 1 1 1 SCOP 110738 Glycerate kinase I
1 1 1 1 SCOP 142338 CofD-like
1 1 1 0 SCOP 101327 YgfB-like
1 1 1 1 SCOP 111326 Urocanase
1 1 1 0 SCOP 63817 Sortase
1 1 1 1 SCOP 160950 YacF-like
1 1 1 1 SCOP 101738 SspB-like
1 1 1 1 SCOP 69786 YggU-like
1 1 1 0 SCOP 140319 IscX-like
1 1 1 0 SCOP 53163 HybD-like
1 1 1 1 SCOP 159127 HupF/HypC-like
1 1 1 0 SCOP 53146 Nitrogenase accessory factor-like
1 1 1 1 SCOP 75471 YhbY-like
1 1 1 1 SCOP 103501 Respiratory nitrate reductase 1 gamma chain
1 1 1 1 SCOP 74863 Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha)
1 1 1 0 SCOP 50939 Sialidases
1 1 1 0 SCOP 142906 YjbR-like
1 1 1 1 SCOP 56534 Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
1 1 1 0 SCOP 49452 Starch-binding domain-like
1 1 1 0 SCOP 89807 Dodecin-like
1 1 1 0 SCOP 158710 PSPTO4464-like
1 1 1 0 SCOP 52206 Hypothetical protein MTH538
1 1 1 1 SCOP 75708 Chemotaxis phosphatase CheZ
1 1 1 0 SCOP 159672 CbiG N-terminal domain-like
1 1 1 0 SCOP 158791 MgtE N-terminal domain-like
1 1 1 1 SCOP 160631 SMI1/KNR4-like
1 1 1 0 SCOP 50346 PRC-barrel domain
1 1 1 0 SCOP 160975 AF1531-like
1 1 1 0 SCOP 143437 THUMP domain-like
1 1 1 1 SCOP 52490 Tubulin nucleotide-binding domain-like
1 1 1 1 SCOP 160191 YcgL-like
1 1 1 0 SCOP 101756 Hypothetical protein YgiW
1 1 1 0 SCOP 50199 Staphylococcal nuclease
1 1 1 1 SCOP 69864 Argininosuccinate synthetase, C-terminal domain
1 1 1 1 SCOP 48024 N-terminal domain of DnaB helicase
1 1 1 0 SCOP 143865 CorA soluble domain-like
1 1 1 1 SCOP 158832 Tex N-terminal region-like
1 1 1 1 SCOP 69336 Alpha subunit of glutamate synthase, C-terminal domain
1 1 1 1 SCOP 158651 YejL-like
1 1 1 0 SCOP 158452 YqcC-like
1 1 1 0 SCOP 52200 Toll/Interleukin receptor TIR domain
1 1 1 0 SCOP 118001 YehU-like
1 1 1 0 SCOP 102220 DNA polymerase III psi subunit
1 1 1 1 SCOP 51690 Nicotinate/Quinolinate PRTase C-terminal domain-like
1 1 1 1 SCOP 82093 Heme chaperone CcmE
1 1 1 1 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
1 1 1 1 SCOP 50729 PH domain-like
1 1 1 0 SCOP 101898 NHL repeat
1 1 1 0 SCOP 160272 Shew3726-like
1 1 1 0 SCOP 160214 FlaG-like
1 1 1 0 SCOP 58042 Outer membrane lipoprotein
1 1 1 0 SCOP 82114 Riboflavin kinase-like
1 1 1 1 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 0 SCOP 82057 Prokaryotic SH3-related domain
1 1 1 1 SCOP 102645 CoaB-like
1 1 1 0 SCOP 118352 HSP33 redox switch-like
1 1 1 1 SCOP 56931 Outer membrane phospholipase A (OMPLA)
1 1 1 1 SCOP 158675 Sama2622-like
1 1 1 0 SCOP 47188 Hemerythrin-like
1 1 1 1 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 0 SCOP 81573 F1F0 ATP synthase subunit B, membrane domain
1 1 1 0 SCOP 52935 PK C-terminal domain-like
1 1 1 1 SCOP 109635 DnaK suppressor protein DksA, alpha-hairpin domain
1 1 1 1 SCOP 81935 N-terminal domain of bifunctional PutA protein
1 1 1 0 SCOP 118116 DNA mismatch repair protein MutL
1 1 1 1 SCOP 81336 F1F0 ATP synthase subunit A
1 1 1 0 SCOP 111342 CbiD-like
1 1 1 0 SCOP 49384 Carbohydrate-binding domain
1 1 1 1 SCOP 47789 C-terminal domain of RNA polymerase alpha subunit
1 1 1 1 SCOP 51344 Epsilon subunit of F1F0-ATP synthase N-terminal domain
1 1 1 0 SCOP 48657 FinO-like
1 1 1 1 SCOP 68923 PEP carboxykinase N-terminal domain
1 1 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
1 1 1 0 SCOP 69055 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
1 1 1 1 SCOP 48334 DNA repair protein MutS, domain III
1 1 1 0 SCOP 58014 Coiled-coil domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 81464 Cytochrome c oxidase subunit II-like, transmembrane region
1 1 1 0 SCOP 161093 MgtE membrane domain-like
1 1 1 1 SCOP 55307 Tubulin C-terminal domain-like
1 1 1 1 SCOP 140990 FtsH protease domain-like
1 1 1 0 SCOP 57884 Ada DNA repair protein, N-terminal domain (N-Ada 10)
1 1 1 1 SCOP 52964 TolB, N-terminal domain
1 1 1 0 SCOP 89260 Collagen-binding domain
1 1 1 1 SCOP 54719 Fe,Mn superoxide dismutase (SOD), C-terminal domain
1 1 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
1 1 1 1 SCOP 110111 Ctag/Cox11
1 1 1 1 SCOP 143968 UbiD C-terminal domain-like
1 1 1 1 SCOP 52021 Carbamoyl phosphate synthetase, small subunit N-terminal domain
1 1 1 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
1 1 1 0 SCOP 49363 Purple acid phosphatase, N-terminal domain
1 1 1 1 SCOP 52029 GroEL apical domain-like
1 1 1 0 SCOP 68912 Rho N-terminal domain-like
1 1 1 1 SCOP 54810 GMP synthetase C-terminal dimerisation domain
1 1 1 0 SCOP 81660 Metal cation-transporting ATPase, ATP-binding domain N
1 1 1 1 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
1 1 1 0 SCOP 48300 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
1 1 1 0 SCOP 141322 NfeD domain-like
1 1 1 0 SCOP 48310 Aldehyde ferredoxin oxidoreductase, C-terminal domains
1 1 1 1 SCOP 55252 C-terminal domain of arginine repressor
1 1 1 0 SCOP 47144 HSC20 (HSCB), C-terminal oligomerisation domain
1 1 1 0 SCOP 144083 Magnesium transport protein CorA, transmembrane region
1 1 1 0 SCOP 46934 UBA-like
1 1 1 0 SCOP 160240 Cation efflux protein cytoplasmic domain-like
1 1 1 1 SCOP 56327 LDH C-terminal domain-like
1 1 1 0 SCOP 46604 Epsilon subunit of F1F0-ATP synthase C-terminal domain
1 1 1 0 SCOP 110921 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
1 1 1 0 SCOP 47823 lambda integrase-like, N-terminal domain
1 1 1 0 SCOP 54423 DsbC/DsbG N-terminal domain-like
1 1 1 0 SCOP 100879 Lesion bypass DNA polymerase (Y-family), little finger domain
1 1 1 0 SCOP 69075 Glutamyl tRNA-reductase dimerization domain
1 1 1 0 SCOP 55945 TATA-box binding protein-like
1 1 1 0 SCOP 52113 BRCT domain
1 1 1 1 SCOP 141259 CarD-like
1 1 1 0 SCOP 53155 Methylated DNA-protein cysteine methyltransferase domain
1 1 1 0 SCOP 74942 YhbC-like, C-terminal domain
1 1 1 0 SCOP 89069 N-terminal, cytoplasmic domain of anti-sigmaE factor RseA
1 1 1 1 SCOP 48435 Bacterial muramidases
1 1 1 0 SCOP 75420 YhbC-like, N-terminal domain
1 1 1 1 SCOP 81624 N-terminal domain of MutM-like DNA repair proteins
1 1 1 0 SCOP 54752 RecA protein, C-terminal domain
1 1 1 0 SCOP 82808 Replication modulator SeqA, C-terminal DNA-binding domain
1 1 1 0 SCOP 55545 beta-N-acetylhexosaminidase-like domain
1 1 1 1 SCOP 100934 Heat shock protein 70kD (HSP70), C-terminal subdomain
1 1 1 1 SCOP 54782 Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
1 1 1 1 SCOP 102735 Trigger factor ribosome-binding domain
1 1 1 1 SCOP 54680 Pyrimidine nucleoside phosphorylase C-terminal domain
1 1 1 1 SCOP 54675 Nicotinate/Quinolinate PRTase N-terminal domain-like
1 1 1 1 SCOP 69189 Penicillin-binding protein associated domain
1 1 1 1 SCOP 47446 Signal peptide-binding domain
1 1 1 1 SCOP 64397 Hsp33 domain
1 1 1 0 SCOP 54991 Anticodon-binding domain of PheRS
1 1 1 1 SCOP 55271 DNA repair protein MutS, domain I
1 1 1 1 SCOP 47928 N-terminal domain of the delta subunit of the F1F0-ATP synthase
1 1 1 0 SCOP 141072 CalX-like
1 1 1 1 SCOP 48108 Carbamoyl phosphate synthetase, large subunit connection domain
1 1 1 1 SCOP 82051 Obg GTP-binding protein N-terminal domain
1 1 1 0 SCOP 142019 Nqo1 FMN-binding domain-like
1 1 1 1 SCOP 55261 GAD domain-like
1 1 1 0 SCOP 51269 AFP III-like domain
1 1 1 1 SCOP 64158 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
1 1 1 1 SCOP 110942 HSP90 C-terminal domain
1 1 1 1 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 1 SCOP 46609 Fe,Mn superoxide dismutase (SOD), N-terminal domain
1 1 1 0 SCOP 69742 Glutamyl tRNA-reductase catalytic, N-terminal domain
1 1 1 1 SCOP 56228 Aldehyde ferredoxin oxidoreductase, N-terminal domain
1 1 1 0 SCOP 75615 Siroheme synthase middle domains-like
1 1 1 1 SCOP 48168 R1 subunit of ribonucleotide reductase, N-terminal domain
1 1 1 0 SCOP 160527 V-type ATPase subunit E-like
1 1 1 1 SCOP 81886 Helical scaffold and wing domains of SecA
1 1 1 1 SCOP 56194 Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
1 1 1 1 SCOP 89000 post-HMGL domain-like
1 1 1 0 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 116878 TrmE connector domain
1 1 1 0 SCOP 51064 Head domain of nucleotide exchange factor GrpE
1 1 1 1 SCOP 55653 Ribosomal protein L9 C-domain
1 1 1 1 SCOP 75445 D-ribose-5-phosphate isomerase (RpiA), lid domain
1 1 1 0 SCOP 103054 General secretion pathway protein M, EpsM
1 1 1 1 SCOP 143517 TRCF domain-like
1 1 1 1 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 1 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 1 SCOP 74778 Aconitase B, N-terminal domain
1 1 1 1 SCOP 64383 Cell-division protein ZipA, C-terminal domain
1 1 1 0 SCOP 117023 DNA primase DnaG, C-terminal domain
1 1 1 1 SCOP 47644 Methionine synthase domain
1 1 1 0 SCOP 46929 DNA helicase RuvA subunit, C-terminal domain
1 1 1 0 SCOP 69705 Transcription factor NusA, N-terminal domain
1 1 1 1 SCOP 53150 DNA repair protein MutS, domain II
1 1 1 1 SCOP 81767 Pre-protein crosslinking domain of SecA
1 1 1 0 SCOP 81799 Putative methyltransferase TM0872, insert domain
1 1 1 0 SCOP 82829 MesJ substrate recognition domain-like
1 1 1 0 SCOP 111474 Coronavirus S2 glycoprotein
1 1 1 0 SCOP 46915 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
1 1 1 1 SCOP 143856 DeoB insert domain-like
1 1 1 1 SCOP 109736 FGAM synthase PurL, linker domain
1 1 1 1 SCOP 160996 HI0933 insert domain-like
1 1 1 0 SCOP 57770 Methionyl-tRNA synthetase (MetRS), Zn-domain

Jump to [ Top of page · Assignment statistics ]


The following superfamilies have one or more weak hits:

SCOP superfamily Myosin rod fragments
SCOP superfamily Ran binding protein zinc finger-like
SCOP superfamily Neurotransmitter-gated ion-channel transmembrane pore
SCOP superfamily Receptor-binding domain of short tail fibre protein gp12
SCOP superfamily Tumor suppressor gene product Apc
SCOP superfamily Cysteine-rich DNA binding domain, (DM domain)
SCOP superfamily PAP/OAS1 substrate-binding domain
SCOP superfamily Photosystem I reaction center subunit XI, PsaL
SCOP superfamily Photosystem I subunits PsaA/PsaB
SCOP superfamily ISP transmembrane anchor
SCOP superfamily Bacterial photosystem II reaction centre, L and M subunits
SCOP superfamily Mitochondrial cytochrome c oxidase subunit IV
SCOP superfamily Gated mechanosensitive channel
SCOP superfamily Family A G protein-coupled receptor-like
SCOP superfamily Adenylylcyclase toxin (the edema factor)
SCOP superfamily Mitotic arrest deficient-like 1, Mad1
SCOP superfamily Zinc-binding domain of translation initiation factor 2 beta
SCOP superfamily Smc hinge domain
SCOP superfamily Pheromone-binding domain of LuxR-like quorum-sensing transcription factors
SCOP superfamily Plakin repeat
SCOP superfamily Hypothetical protein MTH777 (MT0777)
SCOP superfamily Cullin repeat-like
SCOP superfamily C-terminal domain of PLC-beta
SCOP superfamily Type III secretory system chaperone-like
SCOP superfamily Nuclear receptor coactivator interlocking domain
SCOP superfamily Arp2/3 complex 21 kDa subunit ARPC3
SCOP superfamily BAG domain
SCOP superfamily Apolipoprotein A-I
SCOP superfamily Bacterial hemolysins
SCOP superfamily Virus ectodomain
SCOP superfamily Influenza hemagglutinin (stalk)
SCOP superfamily Fibrinogen coiled-coil and central regions
SCOP superfamily Tropomyosin
SCOP superfamily ArfGap/RecO-like zinc finger
SCOP superfamily RING/U-box
SCOP superfamily TNF receptor-like
SCOP superfamily Methylamine dehydrogenase, L chain
SCOP superfamily Snake toxin-like
SCOP superfamily Bowman-Birk inhibitor, BBI
SCOP superfamily Growth factor receptor domain
SCOP superfamily Anthrax protective antigen
SCOP superfamily Substrate-binding domain of HMG-CoA reductase
SCOP superfamily Methenyltetrahydromethanopterin cyclohydrolase
SCOP superfamily DNA topoisomerase I domain
SCOP superfamily tRNA-intron endonuclease N-terminal domain-like
SCOP superfamily Mitochondrial glycoprotein MAM33-like
SCOP superfamily Cystatin/monellin
SCOP superfamily Translation initiation factor IF3, N-terminal domain
SCOP superfamily Penicillin-binding protein 2x (pbp-2x), c-terminal domain
SCOP superfamily Chromo domain-like
SCOP superfamily Caspase-like
SCOP superfamily Urease, beta-subunit
SCOP superfamily Nitrous oxide reductase, N-terminal domain
SCOP superfamily Lipocalins
SCOP superfamily Amine oxidase catalytic domain
SCOP superfamily Calpain large subunit, middle domain (domain III)
SCOP superfamily Periplasmic chaperone C-domain
SCOP superfamily Carboxypeptidase regulatory domain-like
SCOP superfamily Cadherin-like
SCOP superfamily Transglutaminase, two C-terminal domains
SCOP superfamily Heme oxygenase-like
SCOP superfamily Lipovitellin-phosvitin complex, superhelical domain
SCOP superfamily LigA subunit of an aromatic-ring-opening dioxygenase LigAB
SCOP superfamily t-snare proteins
SCOP superfamily HMG-box
SCOP superfamily RAP domain-like
SCOP superfamily Tubulin chaperone cofactor A
SCOP superfamily Smac/diablo
SCOP superfamily Spectrin repeat
SCOP superfamily Prefoldin
SCOP superfamily PspA lactotransferrin-binding region
SCOP superfamily YfgJ-like
SCOP superfamily PH0156-like
SCOP superfamily YehR-like
SCOP superfamily BRK domain-like
SCOP superfamily PH0987 N-terminal domain-like
SCOP superfamily YgaC/TfoX-N like
SCOP superfamily EutN/CcmL-like
SCOP superfamily LanC-like
SCOP superfamily YheA/YmcA-like
SCOP superfamily AF1862-like
SCOP superfamily Ta0600-like
SCOP superfamily occludin/ELL-like
SCOP superfamily NOB1 zinc finger-like
SCOP superfamily E2F-DP heterodimerization region
SCOP superfamily FdhE-like
SCOP superfamily GlcG-like
SCOP superfamily NAP-like
SCOP superfamily Nqo1 middle domain-like
SCOP superfamily MFPT repeat-like
SCOP superfamily RUN domain-like
SCOP superfamily Dcp2 domain-like
SCOP superfamily Vacuolar ATP synthase subunit C
SCOP superfamily RNA-binding protein She2p
SCOP superfamily AF1104-like
SCOP superfamily Bacillus phage protein
SCOP superfamily TTHA0583/YokD-like
SCOP superfamily VPS9 domain
SCOP superfamily Hypothetical protein Ta0289 C-terminal domain
SCOP superfamily Autotransporter
SCOP superfamily V-type ATP synthase subunit C
SCOP superfamily Hypothetical protein TT1725
SCOP superfamily DhaL-like
SCOP superfamily N-terminal domain of adenylylcyclase associated protein, CAP
SCOP superfamily Typo IV secretion system protein TraC
SCOP superfamily Plant proteinase inhibitors

Jump to [ Top of page · Assignment statistics ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.