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  Home > Genomes > Superfamily assignments for Methanobrevibacter ruminantium M1


Methanobrevibacter ruminantium M1 superfamily assignments

Taxonomy
Taxonomy browser entry

Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter; Methanobrevibacter ruminantium; Methanobrevibacter ruminantium M1

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Fasta format sequences
Domain assignments

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Assignment statistics

Sequences: 2217 total
1356 (61 %) with assignment
344 average length
55 % amino acid coverage
Domains: 2033 total
511 unique superfamilies
306 unique families
308 average length
4 average superfamily size
75 % formed by duplication
Domain combinations: 279 domain pairs
744 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies
187 71 48 0 SCOP 51126 Pectin lyase-like
125 115 43 7 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
74 51 31 0 SCOP 49373 Invasin/intimin cell-adhesion fragments
51 51 20 8 SCOP 51735 NAD(P)-binding Rossmann-fold domains
46 37 15 0 SCOP 54862 4Fe-4S ferredoxins
45 45 17 1 SCOP 46785 "Winged helix" DNA-binding domain
39 38 9 7 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
35 33 9 1 SCOP 53448 Nucleotide-diphospho-sugar transferases
29 23 18 3 SCOP 50249 Nucleic acid-binding proteins
24 24 7 2 SCOP 102114 Radical SAM enzymes
22 18 9 0 SCOP 48452 TPR-like
22 22 5 2 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
18 18 3 0 SCOP 52218 Flavoproteins
18 18 1 4 SCOP 53383 PLP-dependent transferases
18 18 9 0 SCOP 54001 Cysteine proteinases
16 15 10 5 SCOP 54211 Ribosomal protein S5 domain 2-like
15 15 9 2 SCOP 52374 Nucleotidylyl transferase
14 14 6 1 SCOP 52402 Adenine nucleotide alpha hydrolases-like
14 10 9 0 SCOP 54631 CBS-domain pair
13 9 7 2 SCOP 53067 Actin-like ATPase domain
13 9 7 0 SCOP 55021 ACT-like
12 11 9 3 SCOP 56059 Glutathione synthetase ATP-binding domain-like
12 9 5 2 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
12 12 3 1 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
12 3 3 0 SCOP 52777 CoA-dependent acyltransferases
12 12 3 3 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
11 11 5 4 SCOP 51556 Metallo-dependent hydrolases
11 11 6 4 SCOP 51569 Aldolase
11 11 6 1 SCOP 51905 FAD/NAD(P)-binding domain
11 11 9 2 SCOP 56784 HAD-like
11 11 6 1 SCOP 53850 Periplasmic binding protein-like II
11 7 3 1 SCOP 56801 Acetyl-CoA synthetase-like
11 1 1 0 SCOP 49478 Cna protein B-type domain
11 11 6 0 SCOP 47413 lambda repressor-like DNA-binding domains
10 10 4 1 SCOP 52317 Class I glutamine amidotransferase-like
10 10 4 0 SCOP 103473 MFS general substrate transporter
10 10 10 2 SCOP 55681 Class II aaRS and biotin synthetases
10 10 4 3 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
10 10 5 0 SCOP 46548 alpha-helical ferredoxin
9 9 4 3 SCOP 53098 Ribonuclease H-like
9 9 3 1 SCOP 51395 FMN-linked oxidoreductases
9 9 7 2 SCOP 50447 Translation proteins
8 7 3 1 SCOP 53790 Tetrapyrrole methylase
8 8 2 3 SCOP 51366 Ribulose-phoshate binding barrel
8 8 3 0 SCOP 56300 Metallo-dependent phosphatases
8 8 6 1 SCOP 52980 Restriction endonuclease-like
8 8 3 2 SCOP 51161 Trimeric LpxA-like enzymes
8 8 3 3 SCOP 56281 Metallo-hydrolase/oxidoreductase
8 7 3 0 SCOP 48371 ARM repeat
8 8 2 2 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
8 6 4 1 SCOP 56042 PurM C-terminal domain-like
7 7 2 1 SCOP 53474 alpha/beta-Hydrolases
7 7 2 1 SCOP 161098 MetI-like
7 7 2 2 SCOP 53613 Ribokinase-like
7 7 5 1 SCOP 56112 Protein kinase-like (PK-like)
7 7 2 2 SCOP 50475 FMN-binding split barrel
7 7 3 1 SCOP 51430 NAD(P)-linked oxidoreductase
7 7 2 0 SCOP 55469 FMN-dependent nitroreductase-like
7 6 4 0 SCOP 51338 Composite domain of metallo-dependent hydrolases
7 7 4 0 SCOP 57802 Rubredoxin-like
7 7 2 1 SCOP 161070 SNF-like
7 6 6 0 SCOP 53623 MurD-like peptide ligases, catalytic domain
7 6 4 1 SCOP 55326 PurM N-terminal domain-like
6 6 3 1 SCOP 53271 PRTase-like
6 6 1 0 SCOP 57829 Zn-binding ribosomal proteins
6 6 4 1 SCOP 50104 Translation proteins SH3-like domain
6 2 2 0 SCOP 47336 ACP-like
6 6 4 0 SCOP 46689 Homeodomain-like
6 6 2 0 SCOP 47113 Histone-fold
6 6 4 0 SCOP 53649 Alkaline phosphatase-like
6 6 3 1 SCOP 51182 RmlC-like cupins
6 6 5 3 SCOP 55931 Glutamine synthetase/guanido kinase
6 6 5 0 SCOP 57783 Zinc beta-ribbon
6 6 2 0 SCOP 50331 MOP-like
6 5 5 0 SCOP 47781 RuvA domain 2-like
6 6 5 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
6 5 4 2 SCOP 52440 PreATP-grasp domain
6 2 1 0 SCOP 53738 Phosphoglucomutase, first 3 domains
6 6 5 0 SCOP 81653 Calcium ATPase, transduction domain A
5 5 2 2 SCOP 53697 SIS domain
5 5 2 2 SCOP 53633 Carbamate kinase-like
5 5 1 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
5 4 2 0 SCOP 55811 Nudix
5 5 3 1 SCOP 88723 PIN domain-like
5 5 5 1 SCOP 52954 Class II aaRS ABD-related
5 5 3 0 SCOP 81324 Voltage-gated potassium channels
5 5 4 3 SCOP 52467 DHS-like NAD/FAD-binding domain
5 5 5 0 SCOP 88697 PUA domain-like
5 3 2 0 SCOP 54980 EF-G C-terminal domain-like
5 5 4 1 SCOP 81665 Calcium ATPase, transmembrane domain M
4 4 1 1 SCOP 53927 Cytidine deaminase-like
4 4 2 0 SCOP 52833 Thioredoxin-like
4 4 3 1 SCOP 53137 Translational machinery components
4 4 4 1 SCOP 55120 Pseudouridine synthase
4 4 3 1 SCOP 64182 DHH phosphoesterases
4 4 1 0 SCOP 51658 Xylose isomerase-like
4 4 3 2 SCOP 100950 NagB/RpiA/CoA transferase-like
4 4 1 1 SCOP 50129 GroES-like
4 4 2 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
4 4 2 0 SCOP 56770 HydA/Nqo6-like
4 4 3 1 SCOP 53187 Zn-dependent exopeptidases
4 4 3 1 SCOP 55315 L30e-like
4 4 2 2 SCOP 52016 LeuD/IlvD-like
4 4 2 0 SCOP 89550 PHP domain-like
4 4 1 1 SCOP 56762 HydB/Nqo4-like
4 3 2 0 SCOP 103481 Multidrug resistance efflux transporter EmrE
4 3 3 0 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
4 4 2 0 SCOP 53323 Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
4 2 1 0 SCOP 53901 Thiolase-like
4 4 1 0 SCOP 50346 PRC-barrel domain
4 3 2 1 SCOP 90123 ABC transporter transmembrane region
4 3 3 1 SCOP 52210 Succinyl-CoA synthetase domains
4 2 2 1 SCOP 47954 Cyclin-like
4 2 1 1 SCOP 55112 Formylmethanofuran:tetrahydromethanopterin formyltransferase
3 3 1 1 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
3 3 3 0 SCOP 46946 S13-like H2TH domain
3 3 1 0 SCOP 89447 AbrB/MazE/MraZ-like
3 3 2 1 SCOP 47240 Ferritin-like
3 3 1 1 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
3 3 3 0 SCOP 55174 Alpha-L RNA-binding motif
3 3 3 2 SCOP 75217 alpha/beta knot
3 3 2 2 SCOP 55821 YrdC/RibB
3 3 2 1 SCOP 48150 DNA-glycosylase
3 3 2 1 SCOP 50182 Sm-like ribonucleoproteins
3 3 1 0 SCOP 47473 EF-hand
3 3 2 1 SCOP 109604 HD-domain/PDEase-like
3 3 1 0 SCOP 69572 Activating enzymes of the ubiquitin-like proteins
3 2 2 0 SCOP 55008 HMA, heavy metal-associated domain
3 2 2 1 SCOP 53800 Chelatase
3 3 1 0 SCOP 101478 ADP-ribosylglycohydrolase
3 2 2 1 SCOP 52255 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
3 3 3 0 SCOP 50692 ADC-like
3 3 2 0 SCOP 117782 YbjQ-like
3 3 2 0 SCOP 110857 Gamma-glutamyl cyclotransferase-like
3 3 3 1 SCOP 52507 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
3 3 2 1 SCOP 53218 Molybdenum cofactor biosynthesis proteins
3 3 2 1 SCOP 144010 CofE-like
3 3 1 0 SCOP 143430 TTP0101/SSO1404-like
3 3 3 0 SCOP 50037 C-terminal domain of transcriptional repressors
3 3 1 0 SCOP 55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
3 3 3 0 SCOP 53244 MurD-like peptide ligases, peptide-binding domain
3 3 2 1 SCOP 53706 Formate dehydrogenase/DMSO reductase, domains 1-3
3 3 3 0 SCOP 52200 Toll/Interleukin receptor TIR domain
3 2 2 0 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
3 3 1 0 SCOP 52922 TK C-terminal domain-like
3 3 3 0 SCOP 49464 Carboxypeptidase regulatory domain-like
3 3 3 0 SCOP 116726 TrkA C-terminal domain-like
3 2 2 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
3 3 2 2 SCOP 55088 Methyl-coenzyme M reductase subunits
3 3 3 0 SCOP 51984 MurCD N-terminal domain
3 3 1 1 SCOP 52413 UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
3 3 2 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
2 2 2 1 SCOP 52141 Uracil-DNA glycosylase-like
2 2 2 1 SCOP 111331 NAD kinase/diacylglycerol kinase-like
2 2 1 1 SCOP 55282 RL5-like
2 2 1 1 SCOP 52080 Ribosomal proteins L15p and L18e
2 2 2 1 SCOP 55920 Creatinase/aminopeptidase
2 1 1 0 SCOP 56214 4'-phosphopantetheinyl transferase
2 2 2 0 SCOP 110324 Ribosomal L27 protein-like
2 2 2 1 SCOP 82649 SufE/NifU
2 1 1 0 SCOP 81333 F1F0 ATP synthase subunit C
2 2 2 0 SCOP 109755 PhoU-like
2 2 1 1 SCOP 48557 L-aspartase-like
2 2 1 1 SCOP 111283 Putative modulator of DNA gyrase, PmbA/TldD
2 2 1 2 SCOP 53720 ALDH-like
2 2 1 1 SCOP 51283 dUTPase-like
2 2 2 1 SCOP 51713 tRNA-guanine transglycosylase
2 2 2 1 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
2 2 2 1 SCOP 51412 Inosine monophosphate dehydrogenase (IMPDH)
2 2 1 0 SCOP 52096 ClpP/crotonase
2 2 1 0 SCOP 52121 Lumazine synthase
2 1 1 0 SCOP 50978 WD40 repeat-like
2 2 2 1 SCOP 56672 DNA/RNA polymerases
2 2 1 1 SCOP 46579 Prefoldin
2 2 1 0 SCOP 63393 RNA polymerase subunits
2 1 1 0 SCOP 54506 Diaminopimelate epimerase-like
2 2 2 0 SCOP 51306 LexA/Signal peptidase
2 2 2 0 SCOP 48439 Protein prenylyltransferase
2 2 2 0 SCOP 110849 ParB/Sulfiredoxin
2 2 2 0 SCOP 55257 RBP11-like subunits of RNA polymerase
2 2 2 1 SCOP 52283 Formate/glycerate dehydrogenase catalytic domain-like
2 2 2 0 SCOP 52788 Phosphotyrosine protein phosphatases I
2 2 1 0 SCOP 69118 AhpD-like
2 2 1 0 SCOP 52091 SpoIIaa-like
2 2 2 0 SCOP 51717 Dihydropteroate synthetase-like
2 2 2 1 SCOP 51998 PFL-like glycyl radical enzymes
2 1 1 0 SCOP 46955 Putative DNA-binding domain
2 2 2 0 SCOP 54909 Dimeric alpha+beta barrel
2 2 1 0 SCOP 118196 YaeB-like
2 2 2 0 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
2 2 1 0 SCOP 53807 "Helical backbone" metal receptor
2 2 2 0 SCOP 51230 Single hybrid motif
2 2 2 1 SCOP 56349 DNA breaking-rejoining enzymes
2 2 2 0 SCOP 81301 Nucleotidyltransferase
2 2 1 0 SCOP 53300 vWA-like
2 2 1 1 SCOP 64167 SurE-like
2 2 2 0 SCOP 161111 Cation efflux protein transmembrane domain-like
2 2 2 1 SCOP 54913 GlnB-like
2 2 1 1 SCOP 53732 Aconitase iron-sulfur domain
2 2 1 1 SCOP 103365 Hypothetical protein PH1602
2 2 1 1 SCOP 56219 DNase I-like
2 2 2 0 SCOP 89095 GatB/YqeY motif
2 2 1 1 SCOP 118215 Proton glutamate symport protein
2 2 1 0 SCOP 101386 all-alpha NTP pyrophosphatases
2 2 1 1 SCOP 117457 FumA C-terminal domain-like
2 2 1 0 SCOP 53163 HybD-like
2 2 2 0 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
2 2 1 0 SCOP 52206 Hypothetical protein MTH538
2 2 2 1 SCOP 46565 Chaperone J-domain
2 2 2 1 SCOP 160975 AF1531-like
2 2 2 0 SCOP 143437 THUMP domain-like
2 2 1 0 SCOP 63867 MoeA C-terminal domain-like
2 2 1 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
2 2 2 0 SCOP 82866 Multidrug efflux transporter AcrB transmembrane domain
2 2 1 1 SCOP 48592 GroEL equatorial domain-like
2 2 1 0 SCOP 69336 Alpha subunit of glutamate synthase, C-terminal domain
2 1 1 0 SCOP 55979 DNA clamp
2 2 2 1 SCOP 51690 Nicotinate/Quinolinate PRTase C-terminal domain-like
2 2 2 1 SCOP 51246 Rudiment single hybrid motif
2 2 1 2 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
2 2 2 1 SCOP 52935 PK C-terminal domain-like
2 1 1 0 SCOP 161093 MgtE membrane domain-like
2 2 1 1 SCOP 53671 Aspartate/ornithine carbamoyltransferase
2 2 2 0 SCOP 57884 Ada DNA repair protein, N-terminal domain (N-Ada 10)
2 2 1 1 SCOP 52029 GroEL apical domain-like
2 2 1 0 SCOP 55060 GHMP Kinase, C-terminal domain
2 2 2 0 SCOP 47979 Iron-dependent repressor protein, dimerization domain
2 2 2 0 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
2 2 2 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
2 2 2 0 SCOP 46600 C-terminal UvrC-binding domain of UvrB
2 2 2 0 SCOP 160240 Cation efflux protein cytoplasmic domain-like
2 2 2 0 SCOP 75500 Putative transcriptional regulator TM1602, C-terminal domain
2 2 1 0 SCOP 110921 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
2 2 1 1 SCOP 63882 MoeA N-terminal region -like
2 1 1 0 SCOP 55945 TATA-box binding protein-like
2 2 2 0 SCOP 54768 dsRNA-binding domain-like
2 1 1 1 SCOP 56053 Ribosomal protein L6
2 2 1 0 SCOP 55957 Phosphoglucomutase, C-terminal domain
2 2 2 0 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 1 0 SCOP 81271 TGS-like
2 2 1 0 SCOP 54368 Glutamine synthetase, N-terminal domain
2 1 1 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
2 2 1 1 SCOP 48081 Methyl-coenzyme M reductase alpha and beta chain C-terminal domain
2 2 1 0 SCOP 55666 Ribonuclease PH domain 2-like
2 2 2 0 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 1 0 SCOP 54849 GroEL-intermediate domain like
1 1 1 0 SCOP 56731 DNA primase core
1 1 1 1 SCOP 81338 Aquaporin-like
1 1 1 1 SCOP 53167 Purine and uridine phosphorylases
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 1 SCOP 75304 Amidase signature (AS) enzymes
1 1 1 0 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54570 Ribosomal protein S19
1 1 1 1 SCOP 54843 Ribosomal protein L22
1 1 1 0 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 1 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 0 SCOP 55831 Thymidylate synthase/dCMP hydroxymethylase
1 1 1 1 SCOP 53597 Dihydrofolate reductase-like
1 1 1 1 SCOP 53748 Phosphoglycerate kinase
1 1 1 0 SCOP 160369 Ribosomal protein L10-like
1 1 1 0 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 0 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 1 SCOP 103263 Chorismate synthase, AroC
1 1 1 0 SCOP 50715 Ribosomal protein L25-like
1 1 1 0 SCOP 54292 2Fe-2S ferredoxin-like
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 1 SCOP 64005 Undecaprenyl diphosphate synthase
1 1 1 0 SCOP 54285 MoaD/ThiS
1 1 1 0 SCOP 54637 Thioesterase/thiol ester dehydrase-isomerase
1 1 1 1 SCOP 56655 Carbohydrate phosphatase
1 1 1 0 SCOP 102705 NIF3 (NGG1p interacting factor 3)-like
1 1 1 1 SCOP 55205 EPT/RTPC-like
1 1 1 1 SCOP 81345 ABC transporter involved in vitamin B12 uptake, BtuC
1 1 1 1 SCOP 48576 Terpenoid synthases
1 1 1 1 SCOP 55129 Ribosomal protein L30p/L7e
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 0 SCOP 56796 Dehydroquinate synthase-like
1 1 1 1 SCOP 51419 PLP-binding barrel
1 1 1 0 SCOP 49764 HSP20-like chaperones
1 1 1 1 SCOP 56104 SAICAR synthase-like
1 1 1 0 SCOP 89957 MTH1187/YkoF-like
1 1 1 1 SCOP 48140 Ribosomal protein L19 (L19e)
1 1 1 1 SCOP 52042 Ribosomal protein L32e
1 1 1 0 SCOP 48256 Citrate synthase
1 1 1 0 SCOP 54575 Ribosomal protein L31e
1 1 1 1 SCOP 69500 DTD-like
1 1 1 0 SCOP 51726 UROD/MetE-like
1 1 1 0 SCOP 103456 Preprotein translocase SecE subunit
1 1 1 1 SCOP 50891 Cyclophilin-like
1 1 1 1 SCOP 54534 FKBP-like
1 1 1 1 SCOP 56322 ADC synthase
1 1 1 0 SCOP 159468 AtpF-like
1 1 1 0 SCOP 55144 LigT-like
1 1 1 0 SCOP 144210 Nop10-like SnoRNP
1 1 1 0 SCOP 89895 FYSH domain
1 1 1 1 SCOP 53774 Glutaminase/Asparaginase
1 1 1 1 SCOP 56752 D-aminoacid aminotransferase-like PLP-dependent enzymes
1 1 1 0 SCOP 57997 Tropomyosin
1 1 1 1 SCOP 56317 Carbon-nitrogen hydrolase
1 1 1 0 SCOP 47819 HRDC-like
1 1 1 0 SCOP 48662 Ribosomal protein L39e
1 1 1 0 SCOP 53639 AraD/HMP-PK domain-like
1 1 1 1 SCOP 52972 ITPase-like
1 1 1 1 SCOP 54919 Nucleoside diphosphate kinase, NDK
1 1 1 0 SCOP 111126 Ligand-binding domain in the NO signalling and Golgi transport
1 1 1 0 SCOP 103486 V-type ATP synthase subunit C
1 1 1 0 SCOP 143870 PF0523-like
1 1 1 1 SCOP 53032 tRNA-intron endonuclease catalytic domain-like
1 1 1 1 SCOP 53056 beta-carbonic anhydrase, cab
1 1 1 1 SCOP 56529 FAH
1 1 1 0 SCOP 64153 YjeF N-terminal domain-like
1 1 1 0 SCOP 55159 eIF1-like
1 1 1 0 SCOP 58113 Apolipoprotein A-I
1 1 1 1 SCOP 46924 RNA polymerase subunit RPB10
1 1 1 0 SCOP 69618 HemD-like
1 1 1 1 SCOP 143447 AMMECR1-like
1 1 1 1 SCOP 52768 Arginase/deacetylase
1 1 1 0 SCOP 52058 L domain-like
1 1 1 0 SCOP 103378 2-methylcitrate dehydratase PrpD
1 1 1 1 SCOP 55909 Pentein
1 1 1 0 SCOP 63562 RPB6/omega subunit-like
1 1 1 1 SCOP 63965 Precorrin-8X methylmutase CbiC/CobH
1 1 1 0 SCOP 101960 Stabilizer of iron transporter SufD
1 1 1 0 SCOP 55620 Tetrahydrobiopterin biosynthesis enzymes-like
1 1 1 1 SCOP 141734 HisI-like
1 1 1 1 SCOP 52172 CheY-like
1 1 1 1 SCOP 111038 YjbQ-like
1 1 1 1 SCOP 55040 Molybdenum cofactor biosynthesis protein C, MoaC
1 1 1 1 SCOP 102405 MCP/YpsA-like
1 1 1 0 SCOP 102712 JAB1/MPN domain
1 1 1 0 SCOP 47598 Ribbon-helix-helix
1 1 1 0 SCOP 143011 RelE-like
1 1 1 1 SCOP 111352 Ammonium transporter
1 1 1 0 SCOP 55331 Tautomerase/MIF
1 1 1 1 SCOP 142754 NadA-like
1 1 1 1 SCOP 56266 DmpA/ArgJ-like
1 1 1 0 SCOP 75712 Rad50 coiled-coil Zn hook
1 1 1 0 SCOP 82771 GIY-YIG endonuclease
1 1 1 0 SCOP 82697 PurS-like
1 1 1 0 SCOP 117916 Fe-S cluster assembly (FSCA) domain-like
1 1 1 1 SCOP 51679 Bacterial luciferase-like
1 1 1 0 SCOP 46767 Methylated DNA-protein cysteine methyltransferase, C-terminal domain
1 1 1 0 SCOP 101744 Rof/RNase P subunit-like
1 1 1 1 SCOP 89733 L-sulfolactate dehydrogenase-like
1 1 1 1 SCOP 143990 YbiA-like
1 1 1 0 SCOP 55154 CYTH-like phosphatases
1 1 1 1 SCOP 81340 Clc chloride channel
1 1 1 0 SCOP 54690 Molybdopterin synthase subunit MoaE
1 1 1 0 SCOP 102215 Creatininase
1 1 1 0 SCOP 116842 XseB-like
1 1 1 0 SCOP 50800 PK beta-barrel domain-like
1 1 1 0 SCOP 159894 YgaC/TfoX-N like
1 1 1 0 SCOP 49879 SMAD/FHA domain
1 1 1 0 SCOP 116734 DNA methylase specificity domain
1 1 1 0 SCOP 52733 Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
1 1 1 0 SCOP 69065 RNase III domain-like
1 1 1 0 SCOP 159245 AttH-like
1 1 1 0 SCOP 54975 Acylphosphatase/BLUF domain-like
1 1 1 1 SCOP 51391 Thiamin phosphate synthase
1 1 1 0 SCOP 48600 Chorismate mutase II
1 1 1 0 SCOP 101307 YutG-like
1 1 1 0 SCOP 159664 CobE/GbiG C-terminal domain-like
1 1 1 1 SCOP 56747 Prim-pol domain
1 1 1 1 SCOP 140478 LemA-like
1 1 1 0 SCOP 52335 Methylglyoxal synthase-like
1 1 1 0 SCOP 140931 Fic-like
1 1 1 1 SCOP 56821 Prismane protein-like
1 1 1 1 SCOP 64288 Chorismate lyase-like
1 1 1 0 SCOP 52242 Cobalamin (vitamin B12)-binding domain
1 1 1 1 SCOP 142338 CofD-like
1 1 1 1 SCOP 51219 TRAP-like
1 1 1 0 SCOP 63817 Sortase
1 1 1 0 SCOP 159659 Cgl1923-like
1 1 1 0 SCOP 159127 HupF/HypC-like
1 1 1 0 SCOP 53146 Nitrogenase accessory factor-like
1 1 1 1 SCOP 51604 Enolase C-terminal domain-like
1 1 1 0 SCOP 56024 Phospholipase D/nuclease
1 1 1 0 SCOP 75471 YhbY-like
1 1 1 1 SCOP 140736 Rv1873-like
1 1 1 0 SCOP 110395 CutC-like
1 1 1 0 SCOP 56271 Pyruvoyl-dependent histidine and arginine decarboxylases
1 1 1 0 SCOP 49452 Starch-binding domain-like
1 1 1 0 SCOP 55136 Probable bacterial effector-binding domain
1 1 1 0 SCOP 89562 RraA-like
1 1 1 0 SCOP 53933 Microbial ribonucleases
1 1 1 1 SCOP 56726 DNA topoisomerase IV, alpha subunit
1 1 1 0 SCOP 159672 CbiG N-terminal domain-like
1 1 1 0 SCOP 52038 Barstar-related
1 1 1 0 SCOP 46950 Double-stranded DNA-binding domain
1 1 1 1 SCOP 89124 Nop domain
1 1 1 1 SCOP 111321 AF1104-like
1 1 1 1 SCOP 143560 MK0786-like
1 1 1 1 SCOP 111249 Sulfolobus fructose-1,6-bisphosphatase-like
1 1 1 0 SCOP 158436 Ta0600-like
1 1 1 0 SCOP 160350 Rnp2-like
1 1 1 0 SCOP 49367 Superoxide reductase-like
1 1 1 1 SCOP 54984 eEF-1beta-like
1 1 1 0 SCOP 55186 ThrRS/AlaRS common domain
1 1 1 1 SCOP 69819 MTH1598-like
1 1 1 0 SCOP 55287 RPB5-like RNA polymerase subunit
1 1 1 1 SCOP 52490 Tubulin nucleotide-binding domain-like
1 1 1 1 SCOP 116820 Rps17e-like
1 1 1 1 SCOP 160374 RplX-like
1 1 1 1 SCOP 102462 Peptidyl-tRNA hydrolase II
1 1 1 0 SCOP 158372 AF1782-like
1 1 1 0 SCOP 69695 SRP19
1 1 1 0 SCOP 53092 Creatinase/prolidase N-terminal domain
1 1 1 0 SCOP 48498 Tetracyclin repressor-like, C-terminal domain
1 1 1 0 SCOP 50199 Staphylococcal nuclease
1 1 1 1 SCOP 69864 Argininosuccinate synthetase, C-terminal domain
1 1 1 0 SCOP 52343 Ferredoxin reductase-like, C-terminal NADP-linked domain
1 1 1 0 SCOP 46589 tRNA-binding arm
1 1 1 1 SCOP 158832 Tex N-terminal region-like
1 1 1 0 SCOP 50156 PDZ domain-like
1 1 1 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
1 1 1 1 SCOP 142823 ComB-like
1 1 1 0 SCOP 56176 FAD-binding/transporter-associated domain-like
1 1 1 0 SCOP 82114 Riboflavin kinase-like
1 1 1 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 0 SCOP 102645 CoaB-like
1 1 1 0 SCOP 143555 FwdE-like
1 1 1 0 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 0 SCOP 48019 post-AAA+ oligomerization domain-like
1 1 1 0 SCOP 52009 Phosphohistidine domain
1 1 1 1 SCOP 102324 F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)
1 1 1 1 SCOP 111342 CbiD-like
1 1 1 0 SCOP 140371 Vng1086c-like
1 1 1 1 SCOP 56199 Methenyltetrahydromethanopterin cyclohydrolase
1 1 1 1 SCOP 51971 Nucleotide-binding domain
1 1 1 0 SCOP 90257 Myosin rod fragments
1 1 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
1 1 1 1 SCOP 52418 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
1 1 1 0 SCOP 58014 Coiled-coil domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 63999 Thiamin pyrophosphokinase, catalytic domain
1 1 1 1 SCOP 55307 Tubulin C-terminal domain-like
1 1 1 1 SCOP 50621 Alanine racemase C-terminal domain-like
1 1 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
1 1 1 0 SCOP 143968 UbiD C-terminal domain-like
1 1 1 1 SCOP 52021 Carbamoyl phosphate synthetase, small subunit N-terminal domain
1 1 1 1 SCOP 54826 Enolase N-terminal domain-like
1 1 1 1 SCOP 75181 Hypothetical protein MTH777 (MT0777)
1 1 1 0 SCOP 68906 SAP domain
1 1 1 1 SCOP 56425 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
1 1 1 0 SCOP 57825 Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
1 1 1 0 SCOP 81660 Metal cation-transporting ATPase, ATP-binding domain N
1 1 1 0 SCOP 143548 Serine metabolism enzymes domain
1 1 1 0 SCOP 46977 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
1 1 1 0 SCOP 63380 Riboflavin synthase domain-like
1 1 1 0 SCOP 141322 NfeD domain-like
1 1 1 0 SCOP 81631 PAP/OAS1 substrate-binding domain
1 1 1 0 SCOP 46934 UBA-like
1 1 1 0 SCOP 47648 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
1 1 1 1 SCOP 56327 LDH C-terminal domain-like
1 1 1 1 SCOP 75569 Archaeal IMP cyclohydrolase PurO
1 1 1 0 SCOP 69075 Glutamyl tRNA-reductase dimerization domain
1 1 1 0 SCOP 75689 Zinc-binding domain of translation initiation factor 2 beta
1 1 1 1 SCOP 100966 Translation initiation factor 2 beta, aIF2beta, N-terminal domain
1 1 1 0 SCOP 47794 Rad51 N-terminal domain-like
1 1 1 0 SCOP 54373 FAD-linked reductases, C-terminal domain
1 1 1 0 SCOP 82861 Mechanosensitive channel protein MscS (YggB), transmembrane region
1 1 1 0 SCOP 158702 Sec63 N-terminal domain-like
1 1 1 1 SCOP 101332 Hypothetical protein MTH393
1 1 1 0 SCOP 110783 Hypothetical protein MTH677
1 1 1 0 SCOP 57821 Hypothetical protein MTH1184
1 1 1 1 SCOP 75412 Hypothetical protein MTH1880
1 1 1 0 SCOP 117892 Band 7/SPFH domain
1 1 1 0 SCOP 100934 Heat shock protein 70kD (HSP70), C-terminal subdomain
1 1 1 0 SCOP 54782 Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
1 1 1 1 SCOP 143975 IlvD/EDD N-terminal domain-like
1 1 1 0 SCOP 54675 Nicotinate/Quinolinate PRTase N-terminal domain-like
1 1 1 0 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
1 1 1 1 SCOP 47446 Signal peptide-binding domain
1 1 1 1 SCOP 56542 Substrate-binding domain of HMG-CoA reductase
1 1 1 0 SCOP 116742 eIF2alpha middle domain-like
1 1 1 1 SCOP 48108 Carbamoyl phosphate synthetase, large subunit connection domain
1 1 1 0 SCOP 55481 N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
1 1 1 0 SCOP 88798 N-terminal, heterodimerisation domain of RBP7 (RpoE)
1 1 1 1 SCOP 55261 GAD domain-like
1 1 1 0 SCOP 51269 AFP III-like domain
1 1 1 0 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 0 SCOP 117018 ATP-dependent DNA ligase DNA-binding domain
1 1 1 0 SCOP 69742 Glutamyl tRNA-reductase catalytic, N-terminal domain
1 1 1 0 SCOP 110993 eIF-2-alpha, C-terminal domain
1 1 1 0 SCOP 75615 Siroheme synthase middle domains-like
1 1 1 0 SCOP 160527 V-type ATPase subunit E-like
1 1 1 0 SCOP 159065 Dom34/Pelota N-terminal domain-like
1 1 1 1 SCOP 89000 post-HMGL domain-like
1 1 1 0 SCOP 88802 Pre-PUA domain
1 1 1 1 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 55003 PAP/Archaeal CCA-adding enzyme, C-terminal domain
1 1 1 0 SCOP 64586 C-terminal domain of ProRS
1 1 1 0 SCOP 51064 Head domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 54585 Cdc48 domain 2-like
1 1 1 1 SCOP 55035 NAD-binding domain of HMG-CoA reductase
1 1 1 0 SCOP 75445 D-ribose-5-phosphate isomerase (RpiA), lid domain
1 1 1 1 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 0 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 0 SCOP 101821 Aminopeptidase/glucanase lid domain
1 1 1 1 SCOP 54893 Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain
1 1 1 0 SCOP 109728 Hypothetical protein AF0491, middle domain
1 1 1 0 SCOP 160996 HI0933 insert domain-like
1 1 1 0 SCOP 141300 GatD N-terminal domain-like
1 1 1 0 SCOP 57770 Methionyl-tRNA synthetase (MetRS), Zn-domain
1 1 1 0 SCOP 55267 tRNA-intron endonuclease N-terminal domain-like

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The following superfamilies have one or more weak hits:

SCOP superfamily Head morphogenesis protein gp7
SCOP superfamily Ran binding protein zinc finger-like
SCOP superfamily YajQ-like
SCOP superfamily CoA-transferase family III (CaiB/BaiF)
SCOP superfamily Fucose-specific lectin
SCOP superfamily Sigma3 and sigma4 domains of RNA polymerase sigma factors
SCOP superfamily Mechanosensitive channel protein MscS (YggB), C-terminal domain
SCOP superfamily N-utilization substance G protein NusG, N-terminal domain
SCOP superfamily DAK1/DegV-like
SCOP superfamily Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
SCOP superfamily beta-sandwich domain of Sec23/24
SCOP superfamily RuBisCo LSMT C-terminal, substrate-binding domain
SCOP superfamily PP2C-like
SCOP superfamily F1F0 ATP synthase subunit B, membrane domain
SCOP superfamily Cytochrome c oxidase subunit III-like
SCOP superfamily Fumarate reductase respiratory complex transmembrane subunits
SCOP superfamily Transmembrane di-heme cytochromes
SCOP superfamily Gated mechanosensitive channel
SCOP superfamily Family A G protein-coupled receptor-like
SCOP superfamily E set domains
SCOP superfamily Mitotic arrest deficient-like 1, Mad1
SCOP superfamily Cullin homology domain
SCOP superfamily Cullin repeat-like
SCOP superfamily Eea1 homodimerisation domain
SCOP superfamily IpsF-like
SCOP superfamily Glycerol-3-phosphate (1)-acyltransferase
SCOP superfamily Recombination endonuclease VII, C-terminal and dimerization domains
SCOP superfamily Intermediate filament protein, coiled coil region
SCOP superfamily Phase 1 flagellin
SCOP superfamily SAND domain-like
SCOP superfamily Methyl-accepting chemotaxis protein (MCP) signaling domain
SCOP superfamily Bacterial hemolysins
SCOP superfamily Influenza hemagglutinin (stalk)
SCOP superfamily Coiled-coil dimerization domain from cortexillin I
SCOP superfamily FYVE/PHD zinc finger
SCOP superfamily RING/U-box
SCOP superfamily beta-beta-alpha zinc fingers
SCOP superfamily HIPIP (high potential iron protein)
SCOP superfamily TNF receptor-like
SCOP superfamily Growth factor receptor domain
SCOP superfamily Colicin
SCOP superfamily Upper collar protein gp10 (connector protein)
SCOP superfamily ADP-ribosylation
SCOP superfamily PheT/TilS domain
SCOP superfamily Actin depolymerizing proteins
SCOP superfamily Frataxin/Nqo15-like
SCOP superfamily Pepsin inhibitor-3
SCOP superfamily Nucleotide cyclase
SCOP superfamily TRADD, N-terminal domain
SCOP superfamily Anticodon-binding domain of PheRS
SCOP superfamily Viral DNA-binding domain
SCOP superfamily Pili subunits
SCOP superfamily MHC antigen-recognition domain
SCOP superfamily Uracil-DNA glycosylase inhibitor protein
SCOP superfamily His-Me finger endonucleases
SCOP superfamily Periplasmic binding protein-like I
SCOP superfamily Phosphoglycerate mutase-like
SCOP superfamily LigB-like
SCOP superfamily Methylated DNA-protein cysteine methyltransferase domain
SCOP superfamily SGNH hydrolase
SCOP superfamily RNI-like
SCOP superfamily Cobalamin (vitamin B12)-dependent enzymes
SCOP superfamily (Trans)glycosidases
SCOP superfamily Mss4-like
SCOP superfamily Hedgehog/intein (Hint) domain
SCOP superfamily PH domain-like
SCOP superfamily STI-like
SCOP superfamily Baculovirus p35 protein
SCOP superfamily Viral protein domain
SCOP superfamily Galactose-binding domain-like
SCOP superfamily C2 domain (Calcium/lipid-binding domain, CaLB)
SCOP superfamily Bacterial adhesins
SCOP superfamily Carbohydrate-binding domain
SCOP superfamily beta-Galactosidase/glucuronidase domain
SCOP superfamily Multiheme cytochromes
SCOP superfamily Moesin tail domain
SCOP superfamily gene 59 helicase assembly protein
SCOP superfamily TrpR-like
SCOP superfamily R1 subunit of ribonucleotide reductase, N-terminal domain
SCOP superfamily NusB-like
SCOP superfamily ERP29 C domain-like
SCOP superfamily IHF-like DNA-binding proteins
SCOP superfamily t-snare proteins
SCOP superfamily Apolipoprotein
SCOP superfamily Tubulin chaperone cofactor A
SCOP superfamily Spectrin repeat
SCOP superfamily E7 C-terminal domain-like
SCOP superfamily YfgJ-like
SCOP superfamily ATP synthase D chain-like
SCOP superfamily Photosystem II reaction center protein J, PsbJ
SCOP superfamily Viral glycoprotein ectodomain-like
SCOP superfamily Poly(A) polymerase catalytic subunit-like
SCOP superfamily PH0156-like
SCOP superfamily PSTPO5379-like
SCOP superfamily NE1680-like
SCOP superfamily YqaI-like
SCOP superfamily YehR-like
SCOP superfamily FLJ32549 C-terminal domain-like
SCOP superfamily BLRF2-like
SCOP superfamily PH1570-like
SCOP superfamily XCC0632-like
SCOP superfamily NEAT domain-like
SCOP superfamily MgtE N-terminal domain-like
SCOP superfamily LanC-like
SCOP superfamily MtlR-like
SCOP superfamily TM1646-like
SCOP superfamily NOB1 zinc finger-like
SCOP superfamily E2F-DP heterodimerization region
SCOP superfamily FdhE-like
SCOP superfamily Oxysterol-binding protein-like
SCOP superfamily Phage tail protein-like
SCOP superfamily CinA-like
SCOP superfamily Extracellular hemoglobin linker subunit, receptor domain
SCOP superfamily ICP-like
SCOP superfamily Glu-tRNAGln amidotransferase C subunit
SCOP superfamily Topoisomerase V catalytic domain-like
SCOP superfamily PriB N-terminal domain-like
SCOP superfamily AF0941-like
SCOP superfamily Mediator hinge subcomplex-like
SCOP superfamily YozE-like
SCOP superfamily EF2947-like
SCOP superfamily MW0975(SA0943)-like
SCOP superfamily Hypothetical protein YqbG
SCOP superfamily Hormone receptor domain
SCOP superfamily OmpH-like
SCOP superfamily VP4 membrane interaction domain
SCOP superfamily Recombination protein RecR
SCOP superfamily Hypothetical protein MG354
SCOP superfamily VPS9 domain
SCOP superfamily Alpha-hemoglobin stabilizing protein AHSP
SCOP superfamily DEK C-terminal domain
SCOP superfamily KorB DNA-binding domain-like
SCOP superfamily DnaK suppressor protein DksA, alpha-hairpin domain
SCOP superfamily BAR/IMD domain-like
SCOP superfamily Sec-beta subunit
SCOP superfamily PetM subunit of the cytochrome b6f complex
SCOP superfamily Virulence-associated V antigen
SCOP superfamily Nucleocapsid protein dimerization domain
SCOP superfamily AXH domain
SCOP superfamily DNA-binding pseudobarrel domain
SCOP superfamily Stathmin
SCOP superfamily Formin homology 2 domain (FH2 domain)
SCOP superfamily Staphylocoagulase

Jump to [ Top of page · Assignment statistics ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.