SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > Genomes > Superfamily assignments for Nostoc punctiforme PCC 73102


Nostoc punctiforme PCC 73102 superfamily assignments

Taxonomy
Taxonomy browser entry

Bacteria; Terrabacteria group; Cyanobacteria/Melainabacteria group; Cyanobacteria; Nostocales; Nostocaceae; Nostoc; Nostoc punctiforme; Nostoc punctiforme PCC 73102

Downloads
Fasta format sequences
Domain assignments

Jump to [ Top of page · Domain assignments ]

Assignment statistics

Sequences: 6689 total
4165 (62 %) with assignment
348 average length
59 % amino acid coverage
Domains: 6706 total
804 unique superfamilies
586 unique families
328 average length
8.3 average superfamily size
88 % formed by duplication
Domain combinations: 611 domain pairs
1598 unique architectures

Jump to [ Top of page · Assignment statistics ]

Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies
461 417 124 7 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
208 187 41 7 SCOP 51735 NAD(P)-binding Rossmann-fold domains
196 169 74 1 SCOP 52172 CheY-like
177 82 71 1 SCOP 55785 PYP-like sensor domain (PAS domain)
175 170 95 2 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
164 107 41 1 SCOP 48452 TPR-like
139 137 78 0 SCOP 47384 Homodimeric domain of signal transducing histidine kinase
137 84 65 2 SCOP 55781 GAF domain-like
111 109 21 9 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
109 29 21 0 SCOP 52777 CoA-dependent acyltransferases
90 64 40 0 SCOP 47336 ACP-like
86 25 23 0 SCOP 51120 beta-Roll
74 74 11 4 SCOP 53474 alpha/beta-Hydrolases
74 73 5 4 SCOP 52980 Restriction endonuclease-like
71 68 6 3 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
69 64 18 2 SCOP 51905 FAD/NAD(P)-binding domain
67 67 23 1 SCOP 56112 Protein kinase-like (PK-like)
64 55 14 0 SCOP 46689 Homeodomain-like
62 62 9 4 SCOP 53448 Nucleotide-diphospho-sugar transferases
61 60 17 0 SCOP 46785 "Winged helix" DNA-binding domain
61 60 14 1 SCOP 53850 Periplasmic binding protein-like II
59 59 12 3 SCOP 52833 Thioredoxin-like
57 57 11 3 SCOP 53098 Ribonuclease H-like
56 43 20 1 SCOP 141571 Pentapeptide repeat-like
55 35 23 1 SCOP 56801 Acetyl-CoA synthetase-like
49 47 7 2 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
49 39 22 2 SCOP 53901 Thiolase-like
48 29 8 4 SCOP 53067 Actin-like ATPase domain
47 29 10 0 SCOP 111369 HlyD-like secretion proteins
46 45 9 5 SCOP 53383 PLP-dependent transferases
44 28 20 1 SCOP 50978 WD40 repeat-like
38 22 12 0 SCOP 51126 Pectin lyase-like
36 27 21 3 SCOP 50249 Nucleic acid-binding proteins
35 35 12 3 SCOP 56784 HAD-like
34 19 8 8 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
34 26 11 2 SCOP 52402 Adenine nucleotide alpha hydrolases-like
34 33 17 7 SCOP 51445 (Trans)glycosidases
34 32 22 2 SCOP 52151 FabD/lysophospholipase-like
34 33 6 1 SCOP 90123 ABC transporter transmembrane region
33 33 8 0 SCOP 46894 C-terminal effector domain of the bipartite response regulators
33 10 4 0 SCOP 82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
32 29 11 0 SCOP 51206 cAMP-binding domain-like
31 30 6 1 SCOP 161098 MetI-like
30 30 4 0 SCOP 103473 MFS general substrate transporter
30 28 6 3 SCOP 54593 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
30 30 6 0 SCOP 47413 lambda repressor-like DNA-binding domains
29 26 13 0 SCOP 48371 ARM repeat
29 29 26 2 SCOP 55073 Nucleotide cyclase
27 26 16 0 SCOP 55048 Probable ACP-binding domain of malonyl-CoA ACP transacylase
26 26 6 3 SCOP 102114 Radical SAM enzymes
26 26 2 2 SCOP 51182 RmlC-like cupins
26 15 5 0 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
26 16 11 0 SCOP 47090 PGBD-like
25 25 3 0 SCOP 56349 DNA breaking-rejoining enzymes
24 23 11 3 SCOP 56059 Glutathione synthetase ATP-binding domain-like
23 23 11 2 SCOP 52317 Class I glutamine amidotransferase-like
23 23 3 1 SCOP 51430 NAD(P)-linked oxidoreductase
22 20 4 2 SCOP 50129 GroES-like
22 18 8 5 SCOP 51161 Trimeric LpxA-like enzymes
22 21 4 5 SCOP 54427 NTF2-like
22 12 5 1 SCOP 82866 Multidrug efflux transporter AcrB transmembrane domain
21 18 13 6 SCOP 54211 Ribosomal protein S5 domain 2-like
21 21 3 0 SCOP 55961 Bet v1-like
21 21 8 3 SCOP 56601 beta-lactamase/transpeptidase-like
21 12 4 0 SCOP 103481 Multidrug resistance efflux transporter EmrE
21 9 9 0 SCOP 69318 Integrin alpha N-terminal domain
20 20 4 5 SCOP 51569 Aldolase
20 20 6 4 SCOP 56281 Metallo-hydrolase/oxidoreductase
20 20 11 0 SCOP 158472 HAMP domain-like
19 19 3 1 SCOP 88723 PIN domain-like
19 19 2 3 SCOP 51197 Clavaminate synthase-like
19 18 11 1 SCOP 54631 CBS-domain pair
18 18 4 4 SCOP 47240 Ferritin-like
18 7 5 1 SCOP 63411 LuxS/MPP-like metallohydrolase
18 9 3 0 SCOP 82714 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
17 17 5 0 SCOP 56300 Metallo-dependent phosphatases
17 16 3 4 SCOP 52096 ClpP/crotonase
17 13 11 0 SCOP 55021 ACT-like
17 17 4 3 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
16 16 11 4 SCOP 52374 Nucleotidylyl transferase
16 16 7 4 SCOP 48208 Six-hairpin glycosidases
16 15 4 0 SCOP 47598 Ribbon-helix-helix
16 16 9 0 SCOP 46565 Chaperone J-domain
15 15 9 5 SCOP 51556 Metallo-dependent hydrolases
15 15 8 1 SCOP 54862 4Fe-4S ferredoxins
15 15 11 2 SCOP 55681 Class II aaRS and biotin synthetases
15 15 4 1 SCOP 54292 2Fe-2S ferredoxin-like
15 15 7 4 SCOP 53187 Zn-dependent exopeptidases
15 15 6 1 SCOP 50022 ISP domain
15 15 3 0 SCOP 47616 GST C-terminal domain-like
15 15 3 5 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
14 14 3 3 SCOP 52218 Flavoproteins
14 14 6 4 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
14 13 6 0 SCOP 50341 CheW-like
14 11 11 0 SCOP 50998 Quinoprotein alcohol dehydrogenase-like
14 14 6 0 SCOP 50156 PDZ domain-like
13 12 6 1 SCOP 63829 Calcium-dependent phosphotriesterase
13 13 10 0 SCOP 47226 Histidine-containing phosphotransfer domain, HPT domain
13 13 5 1 SCOP 52266 SGNH hydrolase
13 13 4 1 SCOP 46458 Globin-like
13 13 2 1 SCOP 54909 Dimeric alpha+beta barrel
13 13 3 1 SCOP 88946 Sigma2 domain of RNA polymerase sigma factors
13 13 9 0 SCOP 49879 SMAD/FHA domain
12 12 2 4 SCOP 51366 Ribulose-phoshate binding barrel
12 12 3 2 SCOP 50475 FMN-binding split barrel
12 9 8 1 SCOP 58104 Methyl-accepting chemotaxis protein (MCP) signaling domain
11 11 5 2 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
11 11 2 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
11 11 3 0 SCOP 55811 Nudix
11 11 6 2 SCOP 109604 HD-domain/PDEase-like
11 11 5 2 SCOP 88713 Glycoside hydrolase/deacetylase
11 11 3 0 SCOP 52091 SpoIIaa-like
11 11 11 0 SCOP 141868 EAL domain-like
11 11 2 2 SCOP 53807 "Helical backbone" metal receptor
11 11 6 0 SCOP 53300 vWA-like
11 11 4 1 SCOP 53822 Periplasmic binding protein-like I
11 11 7 0 SCOP 52200 Toll/Interleukin receptor TIR domain
11 4 4 0 SCOP 53738 Phosphoglucomutase, first 3 domains
10 10 4 2 SCOP 53271 PRTase-like
10 7 4 0 SCOP 52821 Rhodanese/Cell cycle control phosphatase
10 10 3 1 SCOP 51395 FMN-linked oxidoreductases
10 9 8 1 SCOP 81296 E set domains
10 9 8 2 SCOP 50447 Translation proteins
10 10 2 0 SCOP 103511 Chlorophyll a-b binding protein
10 10 2 1 SCOP 158446 IVS-encoded protein-like
10 10 2 1 SCOP 48264 Cytochrome P450
10 10 4 1 SCOP 51679 Bacterial luciferase-like
10 10 3 2 SCOP 52467 DHS-like NAD/FAD-binding domain
10 10 6 2 SCOP 53955 Lysozyme-like
10 10 2 1 SCOP 143847 XisI-like
10 9 9 0 SCOP 47781 RuvA domain 2-like
10 10 2 0 SCOP 48498 Tetracyclin repressor-like, C-terminal domain
10 10 5 2 SCOP 56176 FAD-binding/transporter-associated domain-like
10 6 5 1 SCOP 54980 EF-G C-terminal domain-like
10 10 4 1 SCOP 56436 C-type lectin-like
10 5 3 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
9 9 7 1 SCOP 81606 PP2C-like
9 8 3 0 SCOP 69593 Glycerol-3-phosphate (1)-acyltransferase
9 9 3 2 SCOP 53720 ALDH-like
9 9 4 1 SCOP 50494 Trypsin-like serine proteases
9 9 5 0 SCOP 52129 Caspase-like
9 8 4 1 SCOP 81665 Calcium ATPase, transmembrane domain M
9 9 7 1 SCOP 140869 GUN4-like
9 9 5 0 SCOP 81653 Calcium ATPase, transduction domain A
8 8 5 1 SCOP 54534 FKBP-like
8 7 3 1 SCOP 46626 Cytochrome c
8 8 2 2 SCOP 52283 Formate/glycerate dehydrogenase catalytic domain-like
8 8 6 2 SCOP 88697 PUA domain-like
8 6 5 1 SCOP 51338 Composite domain of metallo-dependent hydrolases
8 8 5 3 SCOP 52922 TK C-terminal domain-like
8 7 3 1 SCOP 52440 PreATP-grasp domain
8 8 6 0 SCOP 51011 Glycosyl hydrolase domain
8 8 4 0 SCOP 54373 FAD-linked reductases, C-terminal domain
7 7 3 2 SCOP 53927 Cytidine deaminase-like
7 7 5 1 SCOP 53790 Tetrapyrrole methylase
7 7 5 1 SCOP 55174 Alpha-L RNA-binding motif
7 7 7 3 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
7 6 2 1 SCOP 48576 Terpenoid synthases
7 7 3 0 SCOP 49764 HSP20-like chaperones
7 7 7 2 SCOP 53649 Alkaline phosphatase-like
7 7 6 1 SCOP 74650 Galactose mutarotase-like
7 5 3 0 SCOP 52058 L domain-like
7 7 1 1 SCOP 81483 Bacterial photosystem II reaction centre, L and M subunits
7 7 6 1 SCOP 81324 Voltage-gated potassium channels
7 7 3 1 SCOP 158682 TerB-like
7 5 5 1 SCOP 56024 Phospholipase D/nuclease
7 6 4 0 SCOP 82171 DPP6 N-terminal domain-like
7 6 4 0 SCOP 50346 PRC-barrel domain
7 7 2 1 SCOP 55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
7 7 3 1 SCOP 52743 Subtilisin-like
7 7 6 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
7 4 2 1 SCOP 56014 Nitrite and sulphite reductase 4Fe-4S domain-like
7 7 6 0 SCOP 103190 Sensory domain-like
7 7 5 2 SCOP 53623 MurD-like peptide ligases, catalytic domain
7 7 2 0 SCOP 117892 Band 7/SPFH domain
7 4 4 0 SCOP 141072 CalX-like
6 6 2 3 SCOP 53613 Ribokinase-like
6 6 4 3 SCOP 55120 Pseudouridine synthase
6 3 1 0 SCOP 56214 4'-phosphopantetheinyl transferase
6 6 3 4 SCOP 100950 NagB/RpiA/CoA transferase-like
6 6 5 2 SCOP 75217 alpha/beta knot
6 6 5 0 SCOP 51261 Duplicated hybrid motif
6 6 1 2 SCOP 56655 Carbohydrate phosphatase
6 5 2 0 SCOP 53254 Phosphoglycerate mutase-like
6 6 4 0 SCOP 50182 Sm-like ribonucleoproteins
6 5 3 1 SCOP 55469 FMN-dependent nitroreductase-like
6 6 2 1 SCOP 48613 Heme oxygenase-like
6 6 2 1 SCOP 53056 beta-carbonic anhydrase, cab
6 3 3 1 SCOP 55239 RuBisCO, small subunit
6 5 2 1 SCOP 143414 CcmK-like
6 6 1 0 SCOP 143120 YefM-like
6 6 2 0 SCOP 143100 TTHA1013/TTHA0281-like
6 6 1 0 SCOP 56209 Nitrile hydratase alpha chain
6 6 3 1 SCOP 49503 Cupredoxins
6 6 2 0 SCOP 50118 Cell growth inhibitor/plasmid maintenance toxic component
6 4 4 0 SCOP 116734 DNA methylase specificity domain
6 6 3 1 SCOP 56925 OMPA-like
6 6 3 0 SCOP 50331 MOP-like
6 6 4 1 SCOP 53244 MurD-like peptide ligases, peptide-binding domain
6 6 2 1 SCOP 81930 Orange carotenoid protein, N-terminal domain
6 5 4 0 SCOP 116726 TrkA C-terminal domain-like
6 3 1 0 SCOP 55124 Nitrite/Sulfite reductase N-terminal domain-like
5 5 1 1 SCOP 75304 Amidase signature (AS) enzymes
5 4 4 1 SCOP 54197 HIT-like
5 5 4 2 SCOP 50104 Translation proteins SH3-like domain
5 5 3 1 SCOP 55920 Creatinase/aminopeptidase
5 5 1 3 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
5 5 2 1 SCOP 111283 Putative modulator of DNA gyrase, PmbA/TldD
5 5 2 0 SCOP 54637 Thioesterase/thiol ester dehydrase-isomerase
5 5 1 2 SCOP 56796 Dehydroquinate synthase-like
5 5 4 1 SCOP 51419 PLP-binding barrel
5 5 1 0 SCOP 48317 Acid phosphatase/Vanadium-dependent haloperoxidase
5 5 2 0 SCOP 54928 RNA-binding domain, RBD
5 4 3 2 SCOP 55620 Tetrahydrobiopterin biosynthesis enzymes-like
5 5 3 2 SCOP 55931 Glutamine synthetase/guanido kinase
5 5 1 0 SCOP 143011 RelE-like
5 5 4 0 SCOP 117916 Fe-S cluster assembly (FSCA) domain-like
5 5 5 1 SCOP 51230 Single hybrid motif
5 5 4 2 SCOP 81301 Nucleotidyltransferase
5 5 3 0 SCOP 55166 Hedgehog/DD-peptidase
5 5 3 1 SCOP 81340 Clc chloride channel
5 5 4 1 SCOP 50800 PK beta-barrel domain-like
5 5 1 0 SCOP 54786 YcfA/nrd intein domain
5 5 1 0 SCOP 55200 Translation initiation factor IF3, C-terminal domain
5 5 3 0 SCOP 82689 Mechanosensitive channel protein MscS (YggB), C-terminal domain
5 5 3 0 SCOP 82153 FAS1 domain
5 5 4 0 SCOP 50969 YVTN repeat-like/Quinoprotein amine dehydrogenase
5 5 2 1 SCOP 56645 Acyl-CoA dehydrogenase NM domain-like
5 5 2 1 SCOP 47203 Acyl-CoA dehydrogenase C-terminal domain-like
5 5 2 0 SCOP 50199 Staphylococcal nuclease
5 3 3 1 SCOP 48592 GroEL equatorial domain-like
5 5 2 2 SCOP 51246 Rudiment single hybrid motif
5 5 3 0 SCOP 101898 NHL repeat
5 5 2 0 SCOP 81923 Double Clp-N motif
5 5 2 4 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
5 5 2 0 SCOP 140376 ChaB-like
5 5 5 0 SCOP 52009 Phosphohistidine domain
5 5 2 1 SCOP 140990 FtsH protease domain-like
5 4 2 1 SCOP 56042 PurM C-terminal domain-like
5 5 2 1 SCOP 46977 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
5 5 2 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
5 4 2 1 SCOP 55326 PurM N-terminal domain-like
5 5 3 0 SCOP 82861 Mechanosensitive channel protein MscS (YggB), transmembrane region
5 5 1 1 SCOP 54364 Translation initiation factor IF3, N-terminal domain
4 4 1 1 SCOP 111331 NAD kinase/diacylglycerol kinase-like
4 4 3 1 SCOP 64182 DHH phosphoesterases
4 4 2 1 SCOP 53597 Dihydrofolate reductase-like
4 4 1 1 SCOP 47729 IHF-like DNA-binding proteins
4 4 2 0 SCOP 109998 Triger factor/SurA peptide-binding domain-like
4 4 3 2 SCOP 53633 Carbamate kinase-like
4 4 2 2 SCOP 48557 L-aspartase-like
4 4 3 2 SCOP 55821 YrdC/RibB
4 4 2 0 SCOP 54285 MoaD/ThiS
4 3 2 1 SCOP 56935 Porins
4 4 1 1 SCOP 50685 Barwin-like endoglucanases
4 4 1 1 SCOP 81452 Cytochrome c oxidase subunit III-like
4 4 1 0 SCOP 52799 (Phosphotyrosine protein) phosphatases II
4 4 3 1 SCOP 50891 Cyclophilin-like
4 4 3 1 SCOP 56322 ADC synthase
4 4 4 2 SCOP 54001 Cysteine proteinases
4 4 3 0 SCOP 49785 Galactose-binding domain-like
4 4 3 0 SCOP 50630 Acid proteases
4 4 4 0 SCOP 56317 Carbon-nitrogen hydrolase
4 4 2 0 SCOP 55008 HMA, heavy metal-associated domain
4 4 2 1 SCOP 81442 Cytochrome c oxidase subunit I-like
4 4 1 1 SCOP 81342 Transmembrane di-heme cytochromes
4 4 2 0 SCOP 101478 ADP-ribosylglycohydrolase
4 4 3 1 SCOP 69118 AhpD-like
4 4 4 1 SCOP 102405 MCP/YpsA-like
4 4 4 0 SCOP 46955 Putative DNA-binding domain
4 4 4 1 SCOP 52016 LeuD/IlvD-like
4 4 3 1 SCOP 56524 Oxidoreductase molybdopterin-binding domain
4 4 3 0 SCOP 56954 Outer membrane efflux proteins (OEP)
4 4 2 0 SCOP 161111 Cation efflux protein transmembrane domain-like
4 4 4 1 SCOP 56219 DNase I-like
4 4 3 0 SCOP 50952 Soluble quinoprotein glucose dehydrogenase
4 4 4 1 SCOP 48173 Cryptochrome/photolyase FAD-binding domain
4 3 3 0 SCOP 101386 all-alpha NTP pyrophosphatases
4 3 3 1 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
4 4 1 0 SCOP 53041 Resolvase-like
4 4 3 1 SCOP 52738 Methylesterase CheB, C-terminal domain
4 4 2 0 SCOP 160631 SMI1/KNR4-like
4 4 1 0 SCOP 141523 L,D-transpeptidase catalytic domain-like
4 4 1 1 SCOP 109859 NblA-like
4 4 1 0 SCOP 158745 LanC-like
4 4 2 0 SCOP 81464 Cytochrome c oxidase subunit II-like, transmembrane region
4 4 3 1 SCOP 50621 Alanine racemase C-terminal domain-like
4 4 3 1 SCOP 81585 PsbU/PolX domain-like
4 3 3 1 SCOP 63380 Riboflavin synthase domain-like
4 2 1 0 SCOP 54160 Chromo domain-like
4 4 4 0 SCOP 55957 Phosphoglucomutase, C-terminal domain
3 3 2 1 SCOP 53167 Purine and uridine phosphorylases
3 3 3 3 SCOP 53697 SIS domain
3 3 3 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
3 3 1 1 SCOP 75620 Release factor
3 3 3 1 SCOP 51695 PLC-like phosphodiesterases
3 3 1 1 SCOP 55068 Peptide methionine sulfoxide reductase
3 3 2 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
3 3 1 0 SCOP 89360 HesB-like domain
3 3 2 2 SCOP 55205 EPT/RTPC-like
3 3 2 1 SCOP 54060 His-Me finger endonucleases
3 1 1 0 SCOP 56988 Anthrax protective antigen
3 3 2 1 SCOP 56672 DNA/RNA polymerases
3 3 1 1 SCOP 56634 Heme-dependent catalase-like
3 3 3 1 SCOP 53328 Formyltransferase
3 3 2 0 SCOP 52499 Isochorismatase-like hydrolases
3 2 2 1 SCOP 48239 Terpenoid cyclases/Protein prenyltransferases
3 2 2 1 SCOP 48403 Ankyrin repeat
3 3 1 1 SCOP 69572 Activating enzymes of the ubiquitin-like proteins
3 2 2 2 SCOP 54506 Diaminopimelate epimerase-like
3 3 3 0 SCOP 57997 Tropomyosin
3 3 3 0 SCOP 51306 LexA/Signal peptidase
3 3 3 0 SCOP 110849 ParB/Sulfiredoxin
3 3 2 0 SCOP 58113 Apolipoprotein A-I
3 3 1 1 SCOP 52768 Arginase/deacetylase
3 3 1 1 SCOP 52788 Phosphotyrosine protein phosphatases I
3 3 2 1 SCOP 53800 Chelatase
3 3 2 1 SCOP 63965 Precorrin-8X methylmutase CbiC/CobH
3 3 1 1 SCOP 81558 Photosystem I subunits PsaA/PsaB
3 3 1 0 SCOP 81563 Photosystem I reaction center subunit X, PsaK
3 3 2 0 SCOP 144091 Rhomboid-like
3 3 3 0 SCOP 52954 Class II aaRS ABD-related
3 3 2 0 SCOP 54523 Pili subunits
3 3 3 0 SCOP 81901 HCP-like
3 3 2 0 SCOP 50692 ADC-like
3 3 1 0 SCOP 55797 PR-1-like
3 3 3 1 SCOP 53218 Molybdenum cofactor biosynthesis proteins
3 3 2 0 SCOP 54736 ClpS-like
3 3 3 1 SCOP 53732 Aconitase iron-sulfur domain
3 3 1 0 SCOP 69047 Hypothetical protein YjbJ
3 3 2 0 SCOP 69065 RNase III domain-like
3 3 3 1 SCOP 52425 Cryptochrome/photolyase, N-terminal domain
3 3 3 1 SCOP 52335 Methylglyoxal synthase-like
3 3 3 0 SCOP 57802 Rubredoxin-like
3 2 2 1 SCOP 50814 Lipocalins
3 3 1 2 SCOP 51604 Enolase C-terminal domain-like
3 3 3 0 SCOP 46548 alpha-helical ferredoxin
3 3 2 0 SCOP 48024 N-terminal domain of DnaB helicase
3 3 2 0 SCOP 46589 tRNA-binding arm
3 1 1 0 SCOP 55979 DNA clamp
3 3 1 0 SCOP 55103 FAD-linked oxidases, C-terminal domain
3 3 3 0 SCOP 63825 YWTD domain
3 3 3 1 SCOP 56719 Type II DNA topoisomerase
3 1 1 1 SCOP 55973 S-adenosylmethionine synthetase
3 3 1 1 SCOP 52418 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
3 3 3 1 SCOP 51294 Hedgehog/intein (Hint) domain
3 3 2 1 SCOP 54719 Fe,Mn superoxide dismutase (SOD), C-terminal domain
3 3 1 1 SCOP 54826 Enolase N-terminal domain-like
3 3 3 1 SCOP 52029 GroEL apical domain-like
3 3 1 0 SCOP 55060 GHMP Kinase, C-terminal domain
3 3 1 0 SCOP 90002 Hypothetical protein YjiA, C-terminal domain
3 3 1 0 SCOP 160240 Cation efflux protein cytoplasmic domain-like
3 3 1 0 SCOP 47648 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
3 3 1 0 SCOP 110921 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
3 3 2 0 SCOP 54768 dsRNA-binding domain-like
3 3 3 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
3 3 2 1 SCOP 46609 Fe,Mn superoxide dismutase (SOD), N-terminal domain
3 2 2 0 SCOP 55666 Ribonuclease PH domain 2-like
3 3 1 0 SCOP 56519 Penicillin binding protein dimerisation domain
2 1 1 1 SCOP 56731 DNA primase core
2 2 2 0 SCOP 48013 NusB-like
2 2 1 0 SCOP 57829 Zn-binding ribosomal proteins
2 2 1 1 SCOP 52141 Uracil-DNA glycosylase-like
2 2 1 1 SCOP 56420 Peptide deformylase
2 2 1 1 SCOP 53137 Translational machinery components
2 2 2 1 SCOP 46946 S13-like H2TH domain
2 2 2 0 SCOP 89447 AbrB/MazE/MraZ-like
2 2 1 0 SCOP 51658 Xylose isomerase-like
2 2 2 1 SCOP 82649 SufE/NifU
2 2 1 0 SCOP 51316 Mss4-like
2 2 2 1 SCOP 51730 FAD-linked oxidoreductase
2 2 2 0 SCOP 51283 dUTPase-like
2 2 1 1 SCOP 48150 DNA-glycosylase
2 2 2 2 SCOP 56770 HydA/Nqo6-like
2 2 2 1 SCOP 51412 Inosine monophosphate dehydrogenase (IMPDH)
2 2 1 1 SCOP 64005 Undecaprenyl diphosphate synthase
2 2 1 1 SCOP 81345 ABC transporter involved in vitamin B12 uptake, BtuC
2 2 2 1 SCOP 55298 YjgF-like
2 2 2 0 SCOP 52949 Macro domain-like
2 2 2 0 SCOP 47473 EF-hand
2 2 2 0 SCOP 55315 L30e-like
2 2 1 0 SCOP 55144 LigT-like
2 2 1 0 SCOP 48439 Protein prenylyltransferase
2 2 2 0 SCOP 49899 Concanavalin A-like lectins/glucanases
2 2 1 2 SCOP 52972 ITPase-like
2 2 2 0 SCOP 56399 ADP-ribosylation
2 2 2 0 SCOP 69618 HemD-like
2 2 1 1 SCOP 101960 Stabilizer of iron transporter SufD
2 2 1 1 SCOP 50090 Electron transport accessory proteins
2 2 1 1 SCOP 161077 Photosystem II antenna protein-like
2 2 1 1 SCOP 161045 Cytochrome b559 subunits
2 2 1 1 SCOP 111038 YjbQ-like
2 2 2 0 SCOP 143422 Transposase IS200-like
2 2 2 1 SCOP 51717 Dihydropteroate synthetase-like
2 2 2 1 SCOP 55718 SCP-like
2 2 1 0 SCOP 48484 Lipoxigenase
2 2 2 1 SCOP 52255 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
2 2 1 1 SCOP 111352 Ammonium transporter
2 2 1 0 SCOP 55331 Tautomerase/MIF
2 2 2 0 SCOP 57783 Zinc beta-ribbon
2 2 2 0 SCOP 160246 EspE N-terminal domain-like
2 2 2 1 SCOP 46767 Methylated DNA-protein cysteine methyltransferase, C-terminal domain
2 2 2 0 SCOP 89550 PHP domain-like
2 2 1 1 SCOP 64167 SurE-like
2 2 1 1 SCOP 143990 YbiA-like
2 2 2 0 SCOP 110857 Gamma-glutamyl cyclotransferase-like
2 2 2 1 SCOP 52507 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
2 2 1 1 SCOP 54913 GlnB-like
2 2 1 2 SCOP 56762 HydB/Nqo4-like
2 2 2 0 SCOP 101112 Oxygen-evolving enhancer protein 3,
2 2 2 1 SCOP 50956 Thermostable phytase (3-phytase)
2 1 1 1 SCOP 103365 Hypothetical protein PH1602
2 2 1 1 SCOP 117396 TM1631-like
2 2 2 0 SCOP 54975 Acylphosphatase/BLUF domain-like
2 2 1 1 SCOP 160719 gpW/gp25-like
2 2 2 1 SCOP 51391 Thiamin phosphate synthase
2 2 1 0 SCOP 103088 OmpA-like
2 2 2 0 SCOP 55826 YbaK/ProRS associated domain
2 2 1 0 SCOP 102588 LmbE-like
2 2 2 1 SCOP 103025 Folate-binding domain
2 2 2 0 SCOP 53146 Nitrogenase accessory factor-like
2 1 1 0 SCOP 89963 YajQ-like
2 2 2 0 SCOP 160104 Acetoacetate decarboxylase-like
2 2 2 0 SCOP 49452 Starch-binding domain-like
2 2 2 1 SCOP 55186 ThrRS/AlaRS common domain
2 2 2 1 SCOP 52490 Tubulin nucleotide-binding domain-like
2 2 1 1 SCOP 53092 Creatinase/prolidase N-terminal domain
2 2 2 1 SCOP 52343 Ferredoxin reductase-like, C-terminal NADP-linked domain
2 2 1 1 SCOP 56003 Molybdenum cofactor-binding domain
2 2 1 1 SCOP 143865 CorA soluble domain-like
2 2 2 0 SCOP 69279 Phage tail proteins
2 2 1 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
2 2 1 1 SCOP 53706 Formate dehydrogenase/DMSO reductase, domains 1-3
2 2 1 1 SCOP 51690 Nicotinate/Quinolinate PRTase C-terminal domain-like
2 2 1 1 SCOP 142823 ComB-like
2 2 2 0 SCOP 54106 LysM domain
2 2 1 0 SCOP 142921 WGR domain-like
2 1 1 0 SCOP 49313 Cadherin-like
2 2 2 0 SCOP 48019 post-AAA+ oligomerization domain-like
2 2 2 0 SCOP 81573 F1F0 ATP synthase subunit B, membrane domain
2 2 1 1 SCOP 82602 Nuclease A inhibitor (NuiA)
2 2 2 0 SCOP 52935 PK C-terminal domain-like
2 2 2 1 SCOP 50965 Galactose oxidase, central domain
2 2 2 0 SCOP 47789 C-terminal domain of RNA polymerase alpha subunit
2 2 2 1 SCOP 55464 Origin of replication-binding domain, RBD-like
2 2 2 0 SCOP 49464 Carboxypeptidase regulatory domain-like
2 1 1 1 SCOP 53681 Aspartate/glutamate racemase
2 2 2 1 SCOP 52210 Succinyl-CoA synthetase domains
2 2 2 0 SCOP 48056 Di-copper centre-containing domain
2 2 2 1 SCOP 48334 DNA repair protein MutS, domain III
2 2 1 1 SCOP 53671 Aspartate/ornithine carbamoyltransferase
2 1 1 0 SCOP 89260 Collagen-binding domain
2 2 2 0 SCOP 117074 Hypothetical protein PA1324
2 2 1 0 SCOP 54665 CO dehydrogenase molybdoprotein N-domain-like
2 2 2 0 SCOP 81891 Poly A polymerase C-terminal region-like
2 2 1 1 SCOP 56425 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
2 2 2 1 SCOP 101904 GyrA/ParC C-terminal domain-like
2 2 2 0 SCOP 81660 Metal cation-transporting ATPase, ATP-binding domain N
2 2 2 0 SCOP 46600 C-terminal UvrC-binding domain of UvrB
2 2 1 0 SCOP 55447 CO dehydrogenase flavoprotein C-terminal domain-like
2 2 1 0 SCOP 144083 Magnesium transport protein CorA, transmembrane region
2 2 1 1 SCOP 56327 LDH C-terminal domain-like
2 2 1 0 SCOP 63418 MurE/MurF N-terminal domain
2 2 1 0 SCOP 51984 MurCD N-terminal domain
2 1 1 1 SCOP 56053 Ribosomal protein L6
2 2 1 0 SCOP 47741 CO dehydrogenase ISP C-domain like
2 2 1 0 SCOP 52413 UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
2 2 1 0 SCOP 100934 Heat shock protein 70kD (HSP70), C-terminal subdomain
2 2 1 0 SCOP 55031 Bacterial exopeptidase dimerisation domain
2 2 2 0 SCOP 69255 gp5 N-terminal domain-like
2 2 1 0 SCOP 54675 Nicotinate/Quinolinate PRTase N-terminal domain-like
2 2 1 1 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 2 0 SCOP 82708 R3H domain
2 2 1 0 SCOP 141986 LD-carboxypeptidase A C-terminal domain-like
2 2 2 1 SCOP 81271 TGS-like
2 2 2 0 SCOP 102522 Bacterial fluorinating enzyme, N-terminal domain
2 2 1 0 SCOP 63712 Nicotinic receptor ligand binding domain-like
2 2 1 1 SCOP 140864 TROVE domain-like
2 2 2 0 SCOP 88688 Families 57/38 glycoside transferase middle domain
2 2 1 1 SCOP 54368 Glutamine synthetase, N-terminal domain
2 2 2 0 SCOP 47757 Chemotaxis receptor methyltransferase CheR, N-terminal domain
2 1 1 1 SCOP 54713 Elongation factor Ts (EF-Ts), dimerisation domain
2 2 1 1 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 1 1 0 SCOP 54416 Amine oxidase N-terminal region
1 1 1 0 SCOP 81338 Aquaporin-like
1 1 1 0 SCOP 55594 HPr-like
1 1 1 1 SCOP 74982 Small protein B (SmpB)
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 1 SCOP 53178 Peptidyl-tRNA hydrolase-like
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 0 SCOP 46911 Ribosomal protein S18
1 1 1 1 SCOP 143597 YojJ-like
1 1 1 0 SCOP 142433 CinA-like
1 1 1 0 SCOP 82607 YbaB-like
1 1 1 0 SCOP 64376 YlxR-like
1 1 1 0 SCOP 89919 Ribosome-binding factor A, RbfA
1 1 1 1 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
1 1 1 1 SCOP 54570 Ribosomal protein S19
1 1 1 1 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 1 SCOP 55282 RL5-like
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 1 SCOP 52080 Ribosomal proteins L15p and L18e
1 1 1 0 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 0 SCOP 57840 Ribosomal protein L36
1 1 1 1 SCOP 64263 Prokaryotic ribosomal protein L17
1 1 1 0 SCOP 143034 L35p-like
1 1 1 1 SCOP 74731 Ribosomal protein L20
1 1 1 1 SCOP 53784 Phosphofructokinase
1 1 1 0 SCOP 141091 L21p-like
1 1 1 0 SCOP 110324 Ribosomal L27 protein-like
1 1 1 0 SCOP 143800 L28p-like
1 1 1 1 SCOP 53748 Phosphoglycerate kinase
1 1 1 1 SCOP 82549 DAK1/DegV-like
1 1 1 1 SCOP 75625 YebC-like
1 1 1 1 SCOP 50324 Inorganic pyrophosphatase
1 1 1 1 SCOP 160369 Ribosomal protein L10-like
1 1 1 0 SCOP 46992 Ribosomal protein S20
1 1 1 0 SCOP 89623 Ribose/Galactose isomerase RpiB/AlsB
1 1 1 1 SCOP 52943 ATP synthase (F1-ATPase), gamma subunit
1 1 1 0 SCOP 81333 F1F0 ATP synthase subunit C
1 1 1 0 SCOP 109755 PhoU-like
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 1 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 1 SCOP 55194 Ribosome recycling factor, RRF
1 1 1 0 SCOP 54565 Ribosomal protein S16
1 1 1 1 SCOP 69765 IpsF-like
1 1 1 1 SCOP 103263 Chorismate synthase, AroC
1 1 1 1 SCOP 111337 QueA-like
1 1 1 1 SCOP 51713 tRNA-guanine transglycosylase
1 1 1 1 SCOP 50715 Ribosomal protein L25-like
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 1 SCOP 142695 RibA-like
1 1 1 0 SCOP 101908 Putative isomerase YbhE
1 1 1 1 SCOP 102705 NIF3 (NGG1p interacting factor 3)-like
1 1 1 0 SCOP 55229 Cell division protein MinE topological specificity domain
1 1 1 0 SCOP 82657 BolA-like
1 1 1 1 SCOP 52304 Type II 3-dehydroquinate dehydratase
1 1 1 0 SCOP 64307 SirA-like
1 1 1 1 SCOP 52121 Lumazine synthase
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 0 SCOP 54995 Ribosomal protein S6
1 1 1 1 SCOP 56104 SAICAR synthase-like
1 1 1 1 SCOP 47113 Histone-fold
1 1 1 1 SCOP 48256 Citrate synthase
1 1 1 0 SCOP 110296 Oligoxyloglucan reducing end-specific cellobiohydrolase
1 1 1 1 SCOP 69500 DTD-like
1 1 1 1 SCOP 102886 Coproporphyrinogen III oxidase
1 1 1 1 SCOP 51726 UROD/MetE-like
1 1 1 1 SCOP 53590 Nucleoside hydrolase
1 1 1 0 SCOP 55248 PCD-like
1 1 1 0 SCOP 56752 D-aminoacid aminotransferase-like PLP-dependent enzymes
1 1 1 0 SCOP 47819 HRDC-like
1 1 1 0 SCOP 53639 AraD/HMP-PK domain-like
1 1 1 0 SCOP 140959 Indolic compounds 2,3-dioxygenase-like
1 1 1 1 SCOP 54919 Nucleoside diphosphate kinase, NDK
1 1 1 1 SCOP 48113 Heme-dependent peroxidases
1 1 1 0 SCOP 111126 Ligand-binding domain in the NO signalling and Golgi transport
1 1 1 1 SCOP 82282 Homocysteine S-methyltransferase
1 1 1 0 SCOP 49777 PEBP-like
1 1 1 0 SCOP 55257 RBP11-like subunits of RNA polymerase
1 1 1 1 SCOP 56529 FAH
1 1 1 0 SCOP 64153 YjeF N-terminal domain-like
1 1 1 0 SCOP 55159 eIF1-like
1 1 1 0 SCOP 55909 Pentein
1 1 1 0 SCOP 63562 RPB6/omega subunit-like
1 1 1 1 SCOP 141734 HisI-like
1 1 1 1 SCOP 57662 Ferredoxin thioredoxin reductase (FTR), catalytic beta chain
1 1 1 1 SCOP 81648 a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
1 1 1 0 SCOP 103451 PetN subunit of the cytochrome b6f complex
1 1 1 1 SCOP 64234 Photosystem I subunit PsaD
1 1 1 1 SCOP 81536 Subunit III of photosystem I reaction centre, PsaF
1 1 1 0 SCOP 81544 Subunit IX of photosystem I reaction centre, PsaJ
1 1 1 1 SCOP 81568 Photosystem I reaction center subunit XI, PsaL
1 1 1 0 SCOP 81548 Subunit XII of photosystem I reaction centre, PsaM
1 1 1 1 SCOP 161025 Photosystem II 10 kDa phosphoprotein PsbH
1 1 1 0 SCOP 161041 Photosystem II reaction center protein I, PsbI
1 1 1 0 SCOP 161021 Photosystem II reaction center protein J, PsbJ
1 1 1 0 SCOP 161037 Photosystem II reaction center protein K, PsbK
1 1 1 0 SCOP 161017 Photosystem II reaction center protein L, PsbL
1 1 1 0 SCOP 161029 Photosystem II reaction center protein T, PsbT
1 1 1 0 SCOP 161055 PsbZ-like
1 1 1 0 SCOP 49478 Cna protein B-type domain
1 1 1 0 SCOP 161084 MAPEG domain-like
1 1 1 1 SCOP 55040 Molybdenum cofactor biosynthesis protein C, MoaC
1 1 1 0 SCOP 143243 Nqo5-like
1 1 1 1 SCOP 69635 Type III secretory system chaperone-like
1 1 1 0 SCOP 51998 PFL-like glycyl radical enzymes
1 1 1 0 SCOP 102712 JAB1/MPN domain
1 1 1 1 SCOP 160532 Ava3019-like
1 1 1 0 SCOP 55724 Mog1p/PsbP-like
1 1 1 0 SCOP 64438 CNF1/YfiH-like putative cysteine hydrolases
1 1 1 1 SCOP 142754 NadA-like
1 1 1 1 SCOP 56266 DmpA/ArgJ-like
1 1 1 0 SCOP 75712 Rad50 coiled-coil Zn hook
1 1 1 0 SCOP 82771 GIY-YIG endonuclease
1 1 1 0 SCOP 82697 PurS-like
1 1 1 1 SCOP 158615 RbcX-like
1 1 1 1 SCOP 55083 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
1 1 1 1 SCOP 103256 Hypothetical protein TM0160
1 1 1 0 SCOP 161033 Photosystem II reaction center protein M, PsbM
1 1 1 1 SCOP 54447 ssDNA-binding transcriptional regulator domain
1 1 1 0 SCOP 103441 PetM subunit of the cytochrome b6f complex
1 1 1 1 SCOP 117782 YbjQ-like
1 1 1 1 SCOP 63892 Pyridoxine 5'-phosphate synthase
1 1 1 0 SCOP 55154 CYTH-like phosphatases
1 1 1 0 SCOP 54690 Molybdopterin synthase subunit MoaE
1 1 1 1 SCOP 143410 DOPA-like
1 1 1 0 SCOP 102215 Creatininase
1 1 1 0 SCOP 141000 Glu-tRNAGln amidotransferase C subunit
1 1 1 0 SCOP 116842 XseB-like
1 1 1 1 SCOP 110399 ThiG-like
1 1 1 1 SCOP 111304 Recombination protein RecR
1 1 1 0 SCOP 140663 TTHA0068-like
1 1 1 1 SCOP 117856 AF0104/ALDC/Ptd012-like
1 1 1 0 SCOP 69796 Thymidylate synthase-complementing protein Thy1
1 1 1 1 SCOP 50993 Peptidase/esterase 'gauge' domain
1 1 1 1 SCOP 54111 Urease, gamma-subunit
1 1 1 1 SCOP 51278 Urease, beta-subunit
1 1 1 0 SCOP 52733 Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
1 1 1 1 SCOP 159133 EutN/CcmL-like
1 1 1 1 SCOP 143081 BB1717-like
1 1 1 0 SCOP 141694 AF2212/PG0164-like
1 1 1 0 SCOP 89095 GatB/YqeY motif
1 1 1 0 SCOP 81330 Gated mechanosensitive channel
1 1 1 1 SCOP 118215 Proton glutamate symport protein
1 1 1 0 SCOP 159664 CobE/GbiG C-terminal domain-like
1 1 1 1 SCOP 140478 LemA-like
1 1 1 0 SCOP 48295 TrpR-like
1 1 1 0 SCOP 140931 Fic-like
1 1 1 1 SCOP 53323 Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
1 1 1 0 SCOP 143430 TTP0101/SSO1404-like
1 1 1 0 SCOP 50037 C-terminal domain of transcriptional repressors
1 1 1 0 SCOP 75138 HprK N-terminal domain-like
1 1 1 0 SCOP 56507 Methionine synthase activation domain-like
1 1 1 0 SCOP 64288 Chorismate lyase-like
1 1 1 0 SCOP 52242 Cobalamin (vitamin B12)-binding domain
1 1 1 1 SCOP 142338 CofD-like
1 1 1 1 SCOP 101473 DhaL-like
1 1 1 0 SCOP 53062 PTS system fructose IIA component-like
1 1 1 0 SCOP 51219 TRAP-like
1 1 1 0 SCOP 50486 FMT C-terminal domain-like
1 1 1 0 SCOP 75011 3-carboxy-cis,cis-mucoante lactonizing enzyme
1 1 1 1 SCOP 141130 Acetamidase/Formamidase-like
1 1 1 0 SCOP 69786 YggU-like
1 1 1 0 SCOP 53163 HybD-like
1 1 1 0 SCOP 159127 HupF/HypC-like
1 1 1 0 SCOP 82199 SET domain
1 1 1 0 SCOP 159203 NifT/FixU-like
1 1 1 0 SCOP 142764 YgbK-like
1 1 1 0 SCOP 55846 N-acetylmuramoyl-L-alanine amidase-like
1 1 1 0 SCOP 69754 Ribosome binding protein Y (YfiA homologue)
1 1 1 0 SCOP 50974 Nitrous oxide reductase, N-terminal domain
1 1 1 0 SCOP 74653 TolA/TonB C-terminal domain
1 1 1 0 SCOP 141371 PilZ domain-like
1 1 1 0 SCOP 75005 Arabinanase/levansucrase/invertase
1 1 1 1 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
1 1 1 0 SCOP 109709 KorB DNA-binding domain-like
1 1 1 0 SCOP 56726 DNA topoisomerase IV, alpha subunit
1 1 1 0 SCOP 159672 CbiG N-terminal domain-like
1 1 1 0 SCOP 158791 MgtE N-terminal domain-like
1 1 1 0 SCOP 102198 Putative cyclase
1 1 1 0 SCOP 69349 Phage fibre proteins
1 1 1 0 SCOP 160582 MbtH-like
1 1 1 1 SCOP 56574 Serpins
1 1 1 0 SCOP 111321 AF1104-like
1 1 1 0 SCOP 63867 MoeA C-terminal domain-like
1 1 1 0 SCOP 56563 Major capsid protein gp5
1 1 1 0 SCOP 48008 GntR ligand-binding domain-like
1 1 1 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
1 1 1 1 SCOP 69864 Argininosuccinate synthetase, C-terminal domain
1 1 1 1 SCOP 158832 Tex N-terminal region-like
1 1 1 1 SCOP 69336 Alpha subunit of glutamate synthase, C-terminal domain
1 1 1 0 SCOP 50960 TolB, C-terminal domain
1 1 1 0 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
1 1 1 0 SCOP 103032 Hypothetical protein YwqG
1 1 1 0 SCOP 144064 Heme iron utilization protein-like
1 1 1 0 SCOP 55608 Homing endonucleases
1 1 1 0 SCOP 82114 Riboflavin kinase-like
1 1 1 1 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 0 SCOP 160443 SMR domain-like
1 1 1 1 SCOP 82057 Prokaryotic SH3-related domain
1 1 1 1 SCOP 102645 CoaB-like
1 1 1 0 SCOP 118352 HSP33 redox switch-like
1 1 1 0 SCOP 159941 MM3350-like
1 1 1 0 SCOP 48537 Phospholipase C/P1 nuclease
1 1 1 1 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 0 SCOP 63848 Cell-division inhibitor MinC, C-terminal domain
1 1 1 0 SCOP 142877 EndoU-like
1 1 1 1 SCOP 101215 KaiA/RbsU domain
1 1 1 1 SCOP 54580 Allophycocyanin linker chain (domain)
1 1 1 0 SCOP 81552 Subunit PsaX of photosystem I reaction centre
1 1 1 0 SCOP 69360 Cell wall binding repeat
1 1 1 0 SCOP 118116 DNA mismatch repair protein MutL
1 1 1 0 SCOP 81336 F1F0 ATP synthase subunit A
1 1 1 0 SCOP 111342 CbiD-like
1 1 1 0 SCOP 51344 Epsilon subunit of F1F0-ATP synthase N-terminal domain
1 1 1 1 SCOP 51971 Nucleotide-binding domain
1 1 1 0 SCOP 55658 L9 N-domain-like
1 1 1 0 SCOP 49265 Fibronectin type III
1 1 1 0 SCOP 82679 N-utilization substance G protein NusG, N-terminal domain
1 1 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
1 1 1 0 SCOP 69055 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
1 1 1 1 SCOP 56037 PheT/TilS domain
1 1 1 0 SCOP 47162 Apolipoprotein
1 1 1 0 SCOP 58014 Coiled-coil domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 161093 MgtE membrane domain-like
1 1 1 1 SCOP 55307 Tubulin C-terminal domain-like
1 1 1 0 SCOP 141673 MOSC N-terminal domain-like
1 1 1 0 SCOP 57884 Ada DNA repair protein, N-terminal domain (N-Ada 10)
1 1 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
1 1 1 0 SCOP 74853 Lamin A/C globular tail domain
1 1 1 1 SCOP 143968 UbiD C-terminal domain-like
1 1 1 1 SCOP 52021 Carbamoyl phosphate synthetase, small subunit N-terminal domain
1 1 1 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
1 1 1 0 SCOP 49363 Purple acid phosphatase, N-terminal domain
1 1 1 0 SCOP 68912 Rho N-terminal domain-like
1 1 1 1 SCOP 54810 GMP synthetase C-terminal dimerisation domain
1 1 1 0 SCOP 57863 ArfGap/RecO-like zinc finger
1 1 1 0 SCOP 143548 Serine metabolism enzymes domain
1 1 1 0 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
1 1 1 0 SCOP 48300 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
1 1 1 0 SCOP 63737 Leukotriene A4 hydrolase N-terminal domain
1 1 1 0 SCOP 54616 DNA-binding domain of Mlu1-box binding protein MBP1
1 1 1 0 SCOP 160964 MalF N-terminal region-like
1 1 1 0 SCOP 49354 PapD-like
1 1 1 0 SCOP 46934 UBA-like
1 1 1 0 SCOP 90112 Neurotransmitter-gated ion-channel transmembrane pore
1 1 1 1 SCOP 49998 Amine oxidase catalytic domain
1 1 1 0 SCOP 69075 Glutamyl tRNA-reductase dimerization domain
1 1 1 1 SCOP 63882 MoeA N-terminal region -like
1 1 1 0 SCOP 52113 BRCT domain
1 1 1 0 SCOP 141259 CarD-like
1 1 1 0 SCOP 47794 Rad51 N-terminal domain-like
1 1 1 0 SCOP 53155 Methylated DNA-protein cysteine methyltransferase domain
1 1 1 0 SCOP 47831 Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
1 1 1 0 SCOP 74942 YhbC-like, C-terminal domain
1 1 1 0 SCOP 48435 Bacterial muramidases
1 1 1 0 SCOP 75420 YhbC-like, N-terminal domain
1 1 1 0 SCOP 81624 N-terminal domain of MutM-like DNA repair proteins
1 1 1 0 SCOP 55550 SH2 domain
1 1 1 0 SCOP 54752 RecA protein, C-terminal domain
1 1 1 0 SCOP 54782 Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
1 1 1 0 SCOP 101852 Bacterial fluorinating enzyme, C-terminal domain
1 1 1 0 SCOP 102735 Trigger factor ribosome-binding domain
1 1 1 1 SCOP 143975 IlvD/EDD N-terminal domain-like
1 1 1 0 SCOP 159283 Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain
1 1 1 0 SCOP 55904 Ornithine decarboxylase C-terminal domain
1 1 1 0 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
1 1 1 0 SCOP 47446 Signal peptide-binding domain
1 1 1 1 SCOP 64397 Hsp33 domain
1 1 1 0 SCOP 54991 Anticodon-binding domain of PheRS
1 1 1 1 SCOP 55271 DNA repair protein MutS, domain I
1 1 1 0 SCOP 69287 Urease metallochaperone UreE, N-terminal domain
1 1 1 0 SCOP 47928 N-terminal domain of the delta subunit of the F1F0-ATP synthase
1 1 1 1 SCOP 48108 Carbamoyl phosphate synthetase, large subunit connection domain
1 1 1 0 SCOP 69000 FAD-dependent thiol oxidase
1 1 1 0 SCOP 49303 beta-Galactosidase/glucuronidase domain
1 1 1 1 SCOP 82051 Obg GTP-binding protein N-terminal domain
1 1 1 0 SCOP 143724 PHP14-like
1 1 1 0 SCOP 55261 GAD domain-like
1 1 1 0 SCOP 51269 AFP III-like domain
1 1 1 1 SCOP 64158 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
1 1 1 0 SCOP 110942 HSP90 C-terminal domain
1 1 1 1 SCOP 51649 RuBisCo, C-terminal domain
1 1 1 1 SCOP 54966 RuBisCO, large subunit, small (N-terminal) domain
1 1 1 1 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 0 SCOP 69742 Glutamyl tRNA-reductase catalytic, N-terminal domain
1 1 1 0 SCOP 75553 Smc hinge domain
1 1 1 1 SCOP 81886 Helical scaffold and wing domains of SecA
1 1 1 0 SCOP 54849 GroEL-intermediate domain like
1 1 1 0 SCOP 54556 Chitinase insertion domain
1 1 1 0 SCOP 56194 Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
1 1 1 0 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 116878 TrmE connector domain
1 1 1 0 SCOP 51064 Head domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 47005 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
1 1 1 0 SCOP 55653 Ribosomal protein L9 C-domain
1 1 1 1 SCOP 49441 Cytochrome f, large domain
1 1 1 0 SCOP 103431 Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor
1 1 1 0 SCOP 75445 D-ribose-5-phosphate isomerase (RpiA), lid domain
1 1 1 0 SCOP 101790 Aminomethyltransferase beta-barrel domain
1 1 1 0 SCOP 143517 TRCF domain-like
1 1 1 1 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 1 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 1 SCOP 74778 Aconitase B, N-terminal domain
1 1 1 0 SCOP 47644 Methionine synthase domain
1 1 1 0 SCOP 101821 Aminopeptidase/glucanase lid domain
1 1 1 0 SCOP 69705 Transcription factor NusA, N-terminal domain
1 1 1 0 SCOP 53150 DNA repair protein MutS, domain II
1 1 1 1 SCOP 81767 Pre-protein crosslinking domain of SecA
1 1 1 0 SCOP 140356 PPK N-terminal domain-like
1 1 1 0 SCOP 50610 mu transposase, C-terminal domain
1 1 1 0 SCOP 81799 Putative methyltransferase TM0872, insert domain
1 1 1 0 SCOP 69737 Urease metallochaperone UreE, C-terminal domain
1 1 1 0 SCOP 82829 MesJ substrate recognition domain-like
1 1 1 0 SCOP 46915 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
1 1 1 0 SCOP 160996 HI0933 insert domain-like
1 1 1 0 SCOP 52913 RNA 3'-terminal phosphate cyclase, RPTC, insert domain
1 1 1 0 SCOP 140125 Rabenosyn-5 Rab-binding domain-like

Jump to [ Top of page · Assignment statistics ]


The following superfamilies have one or more weak hits:

SCOP superfamily Myosin rod fragments
SCOP superfamily Troponin coil-coiled subunits
SCOP superfamily Zinc finger domain of DNA polymerase-alpha
SCOP superfamily Ran binding protein zinc finger-like
SCOP superfamily DNA-binding protein Tfx
SCOP superfamily L-sulfolactate dehydrogenase-like
SCOP superfamily Fucose-specific lectin
SCOP superfamily Soluble domain of poliovirus core protein 3a
SCOP superfamily Positive stranded ssRNA viruses
SCOP superfamily Apical membrane antigen 1
SCOP superfamily beta-sandwich domain of Sec23/24
SCOP superfamily BEACH domain
SCOP superfamily Myosin phosphatase inhibitor 17kDa protein, CPI-17
SCOP superfamily Mitochondrial cytochrome c oxidase subunit IV
SCOP superfamily Family A G protein-coupled receptor-like
SCOP superfamily H-NS histone-like proteins
SCOP superfamily Chemotaxis phosphatase CheZ
SCOP superfamily Mitotic arrest deficient-like 1, Mad1
SCOP superfamily Zinc-binding domain of translation initiation factor 2 beta
SCOP superfamily Hypothetical protein MTH777 (MT0777)
SCOP superfamily Cullin repeat-like
SCOP superfamily C-terminal domain of PLC-beta
SCOP superfamily Membrane penetration protein mu1
SCOP superfamily DNA-binding C-terminal domain of the transcription factor MotA
SCOP superfamily Phase 1 flagellin
SCOP superfamily Head-to-tail joining protein W, gpW
SCOP superfamily P-domain of calnexin/calreticulin
SCOP superfamily Olfactory marker protein
SCOP superfamily PABC (PABP) domain
SCOP superfamily LEM domain
SCOP superfamily RNA polymerase subunits
SCOP superfamily Bacterial hemolysins
SCOP superfamily Rotavirus nonstructural proteins
SCOP superfamily Delta-sleep-inducing peptide immunoreactive peptide
SCOP superfamily Coiled-coil dimerization domain from cortexillin I
SCOP superfamily Leucine zipper domain
SCOP superfamily Inhibitor of apoptosis (IAP) repeat
SCOP superfamily FYVE/PHD zinc finger
SCOP superfamily RING/U-box
SCOP superfamily Methylamine dehydrogenase, L chain
SCOP superfamily Defensin-like
SCOP superfamily Growth factor receptor domain
SCOP superfamily Aerolisin/ETX pore-forming domain
SCOP superfamily delta-Endotoxin (insectocide), N-terminal domain
SCOP superfamily Colicin
SCOP superfamily Sec1/munc18-like (SM) proteins
SCOP superfamily Prim-pol domain
SCOP superfamily SMAD MH1 domain
SCOP superfamily Phoshotransferase/anion transport protein
SCOP superfamily Subdomain of clathrin and coatomer appendage domain
SCOP superfamily Bactericidal permeability-increasing protein, BPI
SCOP superfamily GYF domain
SCOP superfamily Formylmethanofuran:tetrahydromethanopterin formyltransferase
SCOP superfamily Pyrimidine nucleoside phosphorylase C-terminal domain
SCOP superfamily UBC-like
SCOP superfamily CAD & PB1 domains
SCOP superfamily Fe-only hydrogenase
SCOP superfamily Cobalamin (vitamin B12)-dependent enzymes
SCOP superfamily Regulatory protein AraC
SCOP superfamily Vitelline membrane outer protein-I (VMO-I)
SCOP superfamily C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
SCOP superfamily RCC1/BLIP-II
SCOP superfamily Sialidases
SCOP superfamily Avidin/streptavidin
SCOP superfamily STI-like
SCOP superfamily SH3-domain
SCOP superfamily Virus attachment protein globular domain
SCOP superfamily Calpain large subunit, middle domain (domain III)
SCOP superfamily Transthyretin (synonym: prealbumin)
SCOP superfamily Bacterial adhesins
SCOP superfamily Invasin/intimin cell-adhesion fragments
SCOP superfamily Immunoglobulin
SCOP superfamily Multiheme cytochromes
SCOP superfamily Moesin tail domain
SCOP superfamily Lipovitellin-phosvitin complex, superhelical domain
SCOP superfamily Sec7 domain
SCOP superfamily Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
SCOP superfamily Regulator of G-protein signaling, RGS
SCOP superfamily FliG
SCOP superfamily Cyclin-like
SCOP superfamily Retrovirus capsid protein, N-terminal core domain
SCOP superfamily Ypt/Rab-GAP domain of gyp1p
SCOP superfamily Annexin
SCOP superfamily Saposin
SCOP superfamily lambda integrase-like, N-terminal domain
SCOP superfamily DNA polymerase beta, N-terminal domain-like
SCOP superfamily t-snare proteins
SCOP superfamily Domain of poly(ADP-ribose) polymerase
SCOP superfamily HLH, helix-loop-helix DNA-binding domain
SCOP superfamily 4-helical cytokines
SCOP superfamily Cytochromes
SCOP superfamily Aspartate receptor, ligand-binding domain
SCOP superfamily HMG-box
SCOP superfamily Second domain of FERM
SCOP superfamily Spectrin repeat
SCOP superfamily DNA helicase RuvA subunit, C-terminal domain
SCOP superfamily ARID-like
SCOP superfamily Prefoldin
SCOP superfamily DNA polymerase III theta subunit-like
SCOP superfamily GreA transcript cleavage protein, N-terminal domain
SCOP superfamily PspA lactotransferrin-binding region
SCOP superfamily CHY zinc finger-like
SCOP superfamily YfgJ-like
SCOP superfamily SNF-like
SCOP superfamily ATP synthase D chain-like
SCOP superfamily SSO1389-like
SCOP superfamily AF1531-like
SCOP superfamily Poly(A) polymerase catalytic subunit-like
SCOP superfamily YacF-like
SCOP superfamily BT0923-like
SCOP superfamily BRK domain-like
SCOP superfamily BLRF2-like
SCOP superfamily PG1857-like
SCOP superfamily Bacterial polysaccharide co-polymerase-like
SCOP superfamily YegP-like
SCOP superfamily Dhaf3308-like
SCOP superfamily XCC0632-like
SCOP superfamily EreA/ChaN-like
SCOP superfamily Lipase chaperone-like
SCOP superfamily PMT central region-like
SCOP superfamily PSPTO4464-like
SCOP superfamily Sec63 N-terminal domain-like
SCOP superfamily DnaD domain-like
SCOP superfamily TM1646-like
SCOP superfamily occludin/ELL-like
SCOP superfamily Sec2 N-terminal region
SCOP superfamily Eferin C-derminal domain-like
SCOP superfamily CSL zinc finger
SCOP superfamily NOB1 zinc finger-like
SCOP superfamily E2F-DP heterodimerization region
SCOP superfamily Thermophilic metalloprotease-like
SCOP superfamily FdhE-like
SCOP superfamily Phage tail protein-like
SCOP superfamily THUMP domain-like
SCOP superfamily YktB/PF0168-like
SCOP superfamily YjbR-like
SCOP superfamily MAL13P1.257-like
SCOP superfamily Bacteriophage trimeric proteins domain
SCOP superfamily At5g01610-like
SCOP superfamily NfeD domain-like
SCOP superfamily YccV-like
SCOP superfamily YidB-like
SCOP superfamily PG0816-like
SCOP superfamily RUN domain-like
SCOP superfamily AF0941-like
SCOP superfamily EB1 dimerisation domain-like
SCOP superfamily Type III secretion system domain
SCOP superfamily FlgN-like
SCOP superfamily MW0975(SA0943)-like
SCOP superfamily IscX-like
SCOP superfamily MxiH-like
SCOP superfamily DNA primase DnaG, C-terminal domain
SCOP superfamily Hypothetical protein MPN330
SCOP superfamily YfbU-like
SCOP superfamily Geminin coiled-coil domain
SCOP superfamily OmpH-like
SCOP superfamily SSo0622-like
SCOP superfamily Bacillus phage protein
SCOP superfamily Sporulation related repeat
SCOP superfamily DinB/YfiT-like putative metalloenzymes
SCOP superfamily SBT domain
SCOP superfamily Autotransporter
SCOP superfamily Mitochondrial carrier
SCOP superfamily Respiratory nitrate reductase 1 gamma chain
SCOP superfamily Peptidyl-tRNA hydrolase II
SCOP superfamily DNA polymerase III psi subunit
SCOP superfamily (2r)-phospho-3-sulfolactate synthase ComA
SCOP superfamily Adhesin YadA, collagen-binding domain
SCOP superfamily Hypothetical protein YgiW
SCOP superfamily Rof/RNase P subunit-like
SCOP superfamily Smp-1-like
SCOP superfamily Formin homology 2 domain (FH2 domain)
SCOP superfamily YcfC-like
SCOP superfamily Flagellar export chaperone FliS

Jump to [ Top of page · Assignment statistics ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.