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  Home > Genomes > Superfamily assignments for Entamoeba invadens 1.2


Entamoeba invadens 1.2 superfamily assignments

Taxonomy
Taxonomy browser entry

Eukaryota; Amoebozoa; Archamoebae; Entamoebidae; Entamoeba; Entamoeba invadens

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Fasta format sequences
Domain assignments

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Assignment statistics

Sequences: 11549 total
6735 (58 %) with assignment
449 average length
43 % amino acid coverage
Domains: 11423 total
577 unique superfamilies
307 unique families
329 average length
19.8 average superfamily size
95 % formed by duplication
Domain combinations: 437 domain pairs
1671 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies
2670 727 221 0 SCOP 57184 Growth factor receptor domain
937 683 79 0 SCOP 52058 L domain-like
934 922 183 2 SCOP 56112 Protein kinase-like (PK-like)
722 646 76 10 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
301 270 55 6 SCOP 48371 ARM repeat
240 142 19 5 SCOP 53067 Actin-like ATPase domain
157 151 33 1 SCOP 50978 WD40 repeat-like
153 153 24 2 SCOP 48350 GTPase activation domain, GAP
150 115 34 0 SCOP 54928 RNA-binding domain, RBD
131 121 48 1 SCOP 50729 PH domain-like
107 75 27 1 SCOP 57850 RING/U-box
105 99 29 0 SCOP 48065 DBL homology domain (DH-domain)
103 88 14 1 SCOP 47473 EF-hand
99 55 11 1 SCOP 47923 Ypt/Rab-GAP domain of gyp1p
95 94 17 6 SCOP 54001 Cysteine proteinases
94 94 5 2 SCOP 56300 Metallo-dependent phosphatases
92 77 13 2 SCOP 52833 Thioredoxin-like
77 75 19 3 SCOP 51445 (Trans)glycosidases
64 64 8 1 SCOP 48366 Ras GEF
62 45 19 1 SCOP 48452 TPR-like
62 59 17 0 SCOP 49562 C2 domain (Calcium/lipid-binding domain, CaLB)
61 60 14 4 SCOP 53098 Ribonuclease H-like
60 60 17 3 SCOP 52799 (Phosphotyrosine protein) phosphatases II
58 50 21 1 SCOP 48403 Ankyrin repeat
57 49 25 3 SCOP 50249 Nucleic acid-binding proteins
56 54 8 0 SCOP 46689 Homeodomain-like
55 55 7 0 SCOP 53474 alpha/beta-Hydrolases
54 54 20 8 SCOP 51735 NAD(P)-binding Rossmann-fold domains
52 49 17 1 SCOP 46785 "Winged helix" DNA-binding domain
52 51 7 0 SCOP 103473 MFS general substrate transporter
51 47 9 3 SCOP 56281 Metallo-hydrolase/oxidoreductase
50 27 12 1 SCOP 55753 Actin depolymerizing proteins
50 45 16 0 SCOP 52047 RNI-like
49 29 12 0 SCOP 90123 ABC transporter transmembrane region
48 42 17 0 SCOP 57756 Retrovirus zinc finger-like domains
47 47 5 1 SCOP 56672 DNA/RNA polymerases
46 26 19 0 SCOP 81296 E set domains
46 29 15 0 SCOP 50044 SH3-domain
44 44 8 1 SCOP 81606 PP2C-like
44 42 18 0 SCOP 54236 Ubiquitin-like
43 43 4 5 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
42 42 8 4 SCOP 56784 HAD-like
42 42 18 1 SCOP 47576 Calponin-homology domain, CH-domain
41 41 9 0 SCOP 49899 Concanavalin A-like lectins/glucanases
40 40 14 1 SCOP 53300 vWA-like
39 26 13 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
37 37 2 1 SCOP 55895 Ribonuclease Rh-like
34 33 6 2 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
34 34 8 1 SCOP 111347 Rap/Ran-GAP
32 30 5 0 SCOP 51126 Pectin lyase-like
31 31 7 0 SCOP 103657 BAR/IMD domain-like
31 30 10 0 SCOP 57903 FYVE/PHD zinc finger
28 25 10 0 SCOP 90257 Myosin rod fragments
28 28 3 0 SCOP 48464 ENTH/VHS domain
27 27 7 0 SCOP 81383 F-box domain
26 26 6 1 SCOP 47113 Histone-fold
26 26 9 1 SCOP 56801 Acetyl-CoA synthetase-like
25 19 2 0 SCOP 55770 Profilin (actin-binding protein)
25 20 10 0 SCOP 52113 BRCT domain
24 24 11 2 SCOP 50447 Translation proteins
24 13 12 0 SCOP 57889 Cysteine-rich domain
23 23 7 2 SCOP 64356 SNARE-like
23 18 11 0 SCOP 57997 Tropomyosin
23 23 15 1 SCOP 46565 Chaperone J-domain
22 19 10 3 SCOP 52374 Nucleotidylyl transferase
22 22 4 1 SCOP 54495 UBC-like
22 22 4 0 SCOP 55961 Bet v1-like
22 22 6 0 SCOP 49879 SMAD/FHA domain
21 14 7 0 SCOP 47954 Cyclin-like
20 18 5 4 SCOP 53383 PLP-dependent transferases
20 20 14 5 SCOP 54211 Ribosomal protein S5 domain 2-like
20 20 8 0 SCOP 58038 SNARE fusion complex
20 20 11 0 SCOP 50998 Quinoprotein alcohol dehydrogenase-like
19 19 5 1 SCOP 50104 Translation proteins SH3-like domain
19 7 6 1 SCOP 63411 LuxS/MPP-like metallohydrolase
19 19 4 0 SCOP 81665 Calcium ATPase, transmembrane domain M
19 19 4 0 SCOP 81660 Metal cation-transporting ATPase, ATP-binding domain N
19 19 7 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
19 16 12 0 SCOP 46934 UBA-like
19 19 3 0 SCOP 55550 SH2 domain
18 18 5 0 SCOP 52821 Rhodanese/Cell cycle control phosphatase
18 18 7 0 SCOP 49785 Galactose-binding domain-like
18 17 6 2 SCOP 56219 DNase I-like
18 13 6 0 SCOP 57667 beta-beta-alpha zinc fingers
18 9 6 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
18 18 3 0 SCOP 81653 Calcium ATPase, transduction domain A
17 17 2 1 SCOP 56796 Dehydroquinate synthase-like
16 16 7 0 SCOP 54862 4Fe-4S ferredoxins
16 12 5 0 SCOP 141571 Pentapeptide repeat-like
16 16 3 0 SCOP 55718 SCP-like
16 16 4 0 SCOP 103481 Multidrug resistance efflux transporter EmrE
16 14 4 0 SCOP 49452 Starch-binding domain-like
15 11 5 4 SCOP 51556 Metallo-dependent hydrolases
15 15 3 0 SCOP 53254 Phosphoglycerate mutase-like
15 15 3 2 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
15 15 3 0 SCOP 47095 HMG-box
15 15 7 1 SCOP 56399 ADP-ribosylation
15 5 3 0 SCOP 49373 Invasin/intimin cell-adhesion fragments
14 14 7 2 SCOP 53448 Nucleotide-diphospho-sugar transferases
14 12 4 0 SCOP 55469 FMN-dependent nitroreductase-like
14 14 7 0 SCOP 57863 ArfGap/RecO-like zinc finger
13 11 4 2 SCOP 69572 Activating enzymes of the ubiquitin-like proteins
13 13 4 0 SCOP 48208 Six-hairpin glycosidases
13 6 6 0 SCOP 81901 HCP-like
13 13 4 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
13 13 4 1 SCOP 54768 dsRNA-binding domain-like
13 8 7 0 SCOP 90229 CCCH zinc finger
13 13 4 0 SCOP 109993 VPS9 domain
12 12 11 1 SCOP 55681 Class II aaRS and biotin synthetases
12 10 5 1 SCOP 56104 SAICAR synthase-like
12 12 2 0 SCOP 143113 NAP-like
12 12 4 0 SCOP 52151 FabD/lysophospholipase-like
12 6 3 0 SCOP 82866 Multidrug efflux transporter AcrB transmembrane domain
12 12 3 1 SCOP 75632 Cullin homology domain
12 12 7 0 SCOP 82919 Zn-finger domain of Sec23/24
11 11 2 0 SCOP 52218 Flavoproteins
11 10 4 1 SCOP 52096 ClpP/crotonase
11 11 4 1 SCOP 53187 Zn-dependent exopeptidases
11 11 3 1 SCOP 50182 Sm-like ribonucleoproteins
11 11 4 2 SCOP 55315 L30e-like
11 11 1 0 SCOP 48317 Acid phosphatase/Vanadium-dependent haloperoxidase
11 11 6 3 SCOP 52467 DHS-like NAD/FAD-binding domain
11 3 3 0 SCOP 50199 Staphylococcal nuclease
11 5 2 1 SCOP 55973 S-adenosylmethionine synthetase
11 3 3 0 SCOP 47090 PGBD-like
11 10 8 1 SCOP 81837 BEACH domain
11 10 3 0 SCOP 54849 GroEL-intermediate domain like
10 5 2 4 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
10 10 3 0 SCOP 49764 HSP20-like chaperones
10 10 2 1 SCOP 56815 Sec1/munc18-like (SM) proteins
10 10 3 0 SCOP 48592 GroEL equatorial domain-like
10 10 1 1 SCOP 103032 Hypothetical protein YwqG
10 10 4 1 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
10 5 2 1 SCOP 55945 TATA-box binding protein-like
10 7 4 0 SCOP 54160 Chromo domain-like
10 10 3 0 SCOP 74788 Cullin repeat-like
10 10 5 1 SCOP 48425 Sec7 domain
9 6 6 2 SCOP 51905 FAD/NAD(P)-binding domain
9 9 4 1 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
9 9 4 0 SCOP 50685 Barwin-like endoglucanases
9 9 5 1 SCOP 88723 PIN domain-like
9 9 7 2 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
9 9 1 1 SCOP 56574 Serpins
9 5 5 0 SCOP 50405 Actin-crosslinking proteins
9 9 3 2 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
9 9 2 2 SCOP 52029 GroEL apical domain-like
9 3 1 1 SCOP 53738 Phosphoglucomutase, first 3 domains
9 9 6 0 SCOP 47370 Bromodomain
9 9 8 0 SCOP 47050 VHP, Villin headpiece domain
8 8 7 0 SCOP 111331 NAD kinase/diacylglycerol kinase-like
8 8 3 2 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
8 8 3 0 SCOP 46579 Prefoldin
8 8 6 0 SCOP 64268 PX domain
8 8 5 0 SCOP 54695 POZ domain
8 8 6 0 SCOP 57783 Zinc beta-ribbon
8 8 6 0 SCOP 81301 Nucleotidyltransferase
8 4 1 0 SCOP 53901 Thiolase-like
8 5 4 1 SCOP 54980 EF-G C-terminal domain-like
8 4 1 0 SCOP 159034 Mib/herc2 domain-like
8 8 3 1 SCOP 48019 post-AAA+ oligomerization domain-like
8 8 5 0 SCOP 49348 Clathrin adaptor appendage domain
8 8 5 1 SCOP 101447 Formin homology 2 domain (FH2 domain)
7 7 2 1 SCOP 53613 Ribokinase-like
7 7 3 1 SCOP 55120 Pseudouridine synthase
7 7 2 0 SCOP 82649 SufE/NifU
7 7 2 2 SCOP 51161 Trimeric LpxA-like enzymes
7 7 3 0 SCOP 55811 Nudix
7 7 2 0 SCOP 109604 HD-domain/PDEase-like
7 7 4 0 SCOP 54427 NTF2-like
7 7 2 1 SCOP 55418 eIF4e-like
7 7 5 0 SCOP 52954 Class II aaRS ABD-related
7 7 2 0 SCOP 101478 ADP-ribosylglycohydrolase
7 7 6 0 SCOP 81995 beta-sandwich domain of Sec23/24
7 7 4 0 SCOP 52075 Outer arm dynein light chain 1
7 7 7 0 SCOP 158702 Sec63 N-terminal domain-like
7 7 1 0 SCOP 55031 Bacterial exopeptidase dimerisation domain
7 7 3 0 SCOP 49590 PHL pollen allergen
6 6 4 2 SCOP 56059 Glutathione synthetase ATP-binding domain-like
6 6 3 1 SCOP 55920 Creatinase/aminopeptidase
6 6 3 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
6 6 4 1 SCOP 52949 Macro domain-like
6 6 3 1 SCOP 50891 Cyclophilin-like
6 6 3 1 SCOP 144000 Oxysterol-binding protein-like
6 6 4 0 SCOP 161111 Cation efflux protein transmembrane domain-like
6 6 6 1 SCOP 88697 PUA domain-like
6 3 2 0 SCOP 56024 Phospholipase D/nuclease
6 6 5 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
6 6 3 1 SCOP 47661 t-snare proteins
6 6 5 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
6 6 4 0 SCOP 81631 PAP/OAS1 substrate-binding domain
6 6 1 1 SCOP 101152 Mob1/phocein
6 6 3 0 SCOP 51045 WW domain
6 6 3 1 SCOP 81382 Skp1 dimerisation domain-like
6 2 2 0 SCOP 49758 Calpain large subunit, middle domain (domain III)
5 5 1 1 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
5 5 4 1 SCOP 53137 Translational machinery components
5 5 1 0 SCOP 52080 Ribosomal proteins L15p and L18e
5 5 4 2 SCOP 100950 NagB/RpiA/CoA transferase-like
5 5 5 0 SCOP 47336 ACP-like
5 5 3 1 SCOP 52402 Adenine nucleotide alpha hydrolases-like
5 5 2 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
5 5 2 1 SCOP 53720 ALDH-like
5 5 3 0 SCOP 102114 Radical SAM enzymes
5 5 3 1 SCOP 51395 FMN-linked oxidoreductases
5 5 3 2 SCOP 51419 PLP-binding barrel
5 5 1 1 SCOP 51430 NAD(P)-linked oxidoreductase
5 5 2 1 SCOP 54534 FKBP-like
5 5 1 1 SCOP 57798 Casein kinase II beta subunit
5 5 2 1 SCOP 48239 Terpenoid cyclases/Protein prenyltransferases
5 5 1 0 SCOP 56317 Carbon-nitrogen hydrolase
5 5 3 0 SCOP 144091 Rhomboid-like
5 5 3 0 SCOP 81324 Voltage-gated potassium channels
5 5 1 1 SCOP 56821 Prismane protein-like
5 5 2 0 SCOP 82199 SET domain
5 5 4 0 SCOP 82171 DPP6 N-terminal domain-like
5 5 2 1 SCOP 52490 Tubulin nucleotide-binding domain-like
5 5 3 0 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
5 5 2 0 SCOP 160443 SMR domain-like
5 5 2 2 SCOP 52922 TK C-terminal domain-like
5 5 4 0 SCOP 51011 Glycosyl hydrolase domain
5 5 2 1 SCOP 55307 Tubulin C-terminal domain-like
5 5 3 1 SCOP 53920 Fe-only hydrogenase
5 5 1 1 SCOP 101887 Apyrase
5 5 2 1 SCOP 56204 Hect, E3 ligase catalytic domain
5 4 4 0 SCOP 117839 WWE domain
5 5 1 1 SCOP 49447 Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
5 5 2 0 SCOP 54556 Chitinase insertion domain
4 2 1 0 SCOP 53271 PRTase-like
4 4 1 1 SCOP 53167 Purine and uridine phosphorylases
4 3 3 0 SCOP 53927 Cytidine deaminase-like
4 4 3 0 SCOP 51695 PLC-like phosphodiesterases
4 4 2 0 SCOP 55174 Alpha-L RNA-binding motif
4 4 3 1 SCOP 50129 GroES-like
4 4 2 1 SCOP 74650 Galactose mutarotase-like
4 4 3 0 SCOP 47819 HRDC-like
4 4 2 0 SCOP 88713 Glycoside hydrolase/deacetylase
4 4 2 0 SCOP 50969 YVTN repeat-like/Quinoprotein amine dehydrogenase
4 4 1 1 SCOP 53323 Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
4 4 3 0 SCOP 69322 Tricorn protease domain 2
4 4 4 1 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
4 4 2 1 SCOP 52777 CoA-dependent acyltransferases
4 4 2 0 SCOP 53092 Creatinase/prolidase N-terminal domain
4 4 2 0 SCOP 143865 CorA soluble domain-like
4 3 3 0 SCOP 55979 DNA clamp
4 4 3 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
4 4 2 0 SCOP 50370 Ricin B-like lectins
4 4 3 0 SCOP 101898 NHL repeat
4 4 2 0 SCOP 116726 TrkA C-terminal domain-like
4 4 2 0 SCOP 50621 Alanine racemase C-terminal domain-like
4 4 1 1 SCOP 54719 Fe,Mn superoxide dismutase (SOD), C-terminal domain
4 4 2 0 SCOP 144083 Magnesium transport protein CorA, transmembrane region
4 2 1 0 SCOP 56053 Ribosomal protein L6
4 4 1 0 SCOP 47933 ERP29 C domain-like
4 4 4 0 SCOP 63748 Tudor/PWWP/MBT
4 4 3 1 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
4 4 3 0 SCOP 158573 GINS helical bundle-like
4 3 3 0 SCOP 116846 MIT domain
4 4 2 0 SCOP 48097 Regulator of G-protein signaling, RGS
4 4 2 0 SCOP 50911 Mannose 6-phosphate receptor domain
4 4 1 1 SCOP 46609 Fe,Mn superoxide dismutase (SOD), N-terminal domain
4 4 2 0 SCOP 75553 Smc hinge domain
4 4 1 0 SCOP 55666 Ribonuclease PH domain 2-like
3 3 2 3 SCOP 51569 Aldolase
3 3 2 1 SCOP 52317 Class I glutamine amidotransferase-like
3 3 3 0 SCOP 81338 Aquaporin-like
3 3 2 0 SCOP 57829 Zn-binding ribosomal proteins
3 3 1 1 SCOP 47973 Ribosomal protein S7
3 3 3 2 SCOP 53697 SIS domain
3 3 2 0 SCOP 46946 S13-like H2TH domain
3 3 1 0 SCOP 64182 DHH phosphoesterases
3 3 1 1 SCOP 53784 Phosphofructokinase
3 3 2 0 SCOP 47240 Ferritin-like
3 3 2 0 SCOP 160369 Ribosomal protein L10-like
3 2 2 0 SCOP 81333 F1F0 ATP synthase subunit C
3 3 2 1 SCOP 51316 Mss4-like
3 3 1 1 SCOP 48557 L-aspartase-like
3 3 3 0 SCOP 48150 DNA-glycosylase
3 3 1 1 SCOP 56655 Carbohydrate phosphatase
3 3 3 0 SCOP 101908 Putative isomerase YbhE
3 2 2 0 SCOP 55205 EPT/RTPC-like
3 3 2 0 SCOP 56935 Porins
3 3 1 0 SCOP 55129 Ribosomal protein L30p/L7e
3 3 2 0 SCOP 50985 RCC1/BLIP-II
3 3 1 0 SCOP 50475 FMN-binding split barrel
3 3 3 0 SCOP 55144 LigT-like
3 3 1 2 SCOP 90096 Subunits of heterodimeric actin filament capping protein Capz
3 3 2 1 SCOP 48439 Protein prenylyltransferase
3 2 2 1 SCOP 69645 Arp2/3 complex subunits
3 3 1 1 SCOP 111126 Ligand-binding domain in the NO signalling and Golgi transport
3 3 2 0 SCOP 55257 RBP11-like subunits of RNA polymerase
3 3 2 0 SCOP 52266 SGNH hydrolase
3 3 2 2 SCOP 52768 Arginase/deacetylase
3 3 2 0 SCOP 52283 Formate/glycerate dehydrogenase catalytic domain-like
3 3 1 0 SCOP 58100 Bacterial hemolysins
3 3 2 0 SCOP 50692 ADC-like
3 3 1 1 SCOP 89733 L-sulfolactate dehydrogenase-like
3 3 1 1 SCOP 89124 Nop domain
3 3 2 0 SCOP 55186 ThrRS/AlaRS common domain
3 3 2 1 SCOP 102462 Peptidyl-tRNA hydrolase II
3 3 3 0 SCOP 69318 Integrin alpha N-terminal domain
3 3 2 0 SCOP 81923 Double Clp-N motif
3 3 2 0 SCOP 51971 Nucleotide-binding domain
3 3 3 0 SCOP 55464 Origin of replication-binding domain, RBD-like
3 3 1 0 SCOP 141066 ICP-like
3 3 2 0 SCOP 160059 PriA/YqbF domain
3 3 1 0 SCOP 52440 PreATP-grasp domain
3 3 3 0 SCOP 48334 DNA repair protein MutS, domain III
3 3 1 0 SCOP 63737 Leukotriene A4 hydrolase N-terminal domain
3 3 3 0 SCOP 49354 PapD-like
3 3 2 0 SCOP 144232 HIT/MYND zinc finger-like
3 3 3 1 SCOP 54373 FAD-linked reductases, C-terminal domain
3 3 2 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
3 3 1 0 SCOP 55545 beta-N-acetylhexosaminidase-like domain
3 3 2 0 SCOP 100934 Heat shock protein 70kD (HSP70), C-terminal subdomain
3 3 1 1 SCOP 55957 Phosphoglucomutase, C-terminal domain
3 3 1 1 SCOP 48445 14-3-3 protein
3 3 2 0 SCOP 52087 CRAL/TRIO domain
3 3 3 0 SCOP 63570 PABC (PABP) domain
3 3 1 1 SCOP 55455 SRF-like
3 3 3 0 SCOP 101690 PAZ domain
3 3 3 0 SCOP 82754 C-terminal, gelsolin-like domain of Sec23/24
3 3 3 1 SCOP 109885 I/LWEQ domain
3 3 2 0 SCOP 47862 Saposin
3 3 2 0 SCOP 47912 Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
3 3 3 0 SCOP 47212 FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)
3 3 2 0 SCOP 55711 Subdomain of clathrin and coatomer appendage domain
3 3 1 0 SCOP 140383 BSD domain-like
3 3 2 1 SCOP 54585 Cdc48 domain 2-like
3 3 3 1 SCOP 81811 Helical domain of Sec23/24
2 2 1 1 SCOP 53790 Tetrapyrrole methylase
2 2 1 0 SCOP 56808 Ribosomal protein L1
2 2 2 1 SCOP 52141 Uracil-DNA glycosylase-like
2 2 1 1 SCOP 51366 Ribulose-phoshate binding barrel
2 2 2 1 SCOP 54197 HIT-like
2 2 1 0 SCOP 52166 Ribosomal protein L4
2 2 1 0 SCOP 54570 Ribosomal protein S19
2 2 1 0 SCOP 54843 Ribosomal protein L22
2 2 2 1 SCOP 54686 Ribosomal protein L16p/L10e
2 2 1 1 SCOP 50193 Ribosomal protein L14
2 2 1 1 SCOP 55282 RL5-like
2 2 1 1 SCOP 56047 Ribosomal protein S8
2 2 1 0 SCOP 69593 Glycerol-3-phosphate (1)-acyltransferase
2 2 2 1 SCOP 75217 alpha/beta knot
2 2 2 0 SCOP 52980 Restriction endonuclease-like
2 2 1 0 SCOP 52161 Ribosomal protein L13
2 2 1 0 SCOP 47060 S15/NS1 RNA-binding domain
2 2 1 1 SCOP 51283 dUTPase-like
2 2 2 1 SCOP 51713 tRNA-guanine transglycosylase
2 2 2 1 SCOP 50715 Ribosomal protein L25-like
2 2 2 1 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
2 2 1 0 SCOP 102705 NIF3 (NGG1p interacting factor 3)-like
2 2 1 0 SCOP 48576 Terpenoid synthases
2 2 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
2 2 1 0 SCOP 48140 Ribosomal protein L19 (L19e)
2 2 1 0 SCOP 103506 Mitochondrial carrier
2 2 1 0 SCOP 52042 Ribosomal protein L32e
2 2 1 0 SCOP 54575 Ribosomal protein L31e
2 2 1 0 SCOP 54762 Signal recognition particle alu RNA binding heterodimer, SRP9/14
2 2 2 0 SCOP 140718 Mediator hinge subcomplex-like
2 2 2 1 SCOP 53590 Nucleoside hydrolase
2 2 2 0 SCOP 53649 Alkaline phosphatase-like
2 2 2 0 SCOP 52499 Isochorismatase-like hydrolases
2 2 2 0 SCOP 159468 AtpF-like
2 2 1 1 SCOP 53774 Glutaminase/Asparaginase
2 2 1 1 SCOP 56752 D-aminoacid aminotransferase-like PLP-dependent enzymes
2 2 2 1 SCOP 51182 RmlC-like cupins
2 2 1 2 SCOP 52972 ITPase-like
2 2 2 0 SCOP 55159 eIF1-like
2 2 2 0 SCOP 58113 Apolipoprotein A-I
2 2 1 0 SCOP 143447 AMMECR1-like
2 2 2 0 SCOP 55931 Glutamine synthetase/guanido kinase
2 2 1 0 SCOP 54631 CBS-domain pair
2 2 1 0 SCOP 56601 beta-lactamase/transpeptidase-like
2 2 2 0 SCOP 102712 JAB1/MPN domain
2 2 1 0 SCOP 54593 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
2 1 1 0 SCOP 46955 Putative DNA-binding domain
2 2 1 0 SCOP 55331 Tautomerase/MIF
2 2 2 0 SCOP 117916 Fe-S cluster assembly (FSCA) domain-like
2 2 2 0 SCOP 51230 Single hybrid motif
2 2 2 0 SCOP 54447 ssDNA-binding transcriptional regulator domain
2 2 2 0 SCOP 89550 PHP domain-like
2 2 2 0 SCOP 55154 CYTH-like phosphatases
2 2 1 0 SCOP 81340 Clc chloride channel
2 2 2 0 SCOP 53822 Periplasmic binding protein-like I
2 2 1 1 SCOP 103365 Hypothetical protein PH1602
2 2 2 0 SCOP 51338 Composite domain of metallo-dependent hydrolases
2 2 2 0 SCOP 102588 LmbE-like
2 2 1 0 SCOP 57802 Rubredoxin-like
2 2 2 0 SCOP 48695 Multiheme cytochromes
2 2 2 0 SCOP 100939 SPOC domain-like
2 2 1 0 SCOP 56726 DNA topoisomerase IV, alpha subunit
2 2 1 0 SCOP 46548 alpha-helical ferredoxin
2 2 2 0 SCOP 143437 THUMP domain-like
2 2 1 0 SCOP 116820 Rps17e-like
2 2 1 0 SCOP 160374 RplX-like
2 2 1 0 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
2 2 2 0 SCOP 117281 Kelch motif
2 2 2 1 SCOP 56719 Type II DNA topoisomerase
2 2 2 0 SCOP 118116 DNA mismatch repair protein MutL
2 1 1 1 SCOP 52210 Succinyl-CoA synthetase domains
2 2 2 0 SCOP 160148 CPE0013-like
2 2 2 0 SCOP 81891 Poly A polymerase C-terminal region-like
2 2 1 0 SCOP 52279 Beta-D-glucan exohydrolase, C-terminal domain
2 2 2 0 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
2 2 2 0 SCOP 161270 PspA lactotransferrin-binding region
2 2 2 0 SCOP 160240 Cation efflux protein cytoplasmic domain-like
2 2 1 1 SCOP 56327 LDH C-terminal domain-like
2 2 2 0 SCOP 100966 Translation initiation factor 2 beta, aIF2beta, N-terminal domain
2 2 1 1 SCOP 55637 Cell cycle regulatory proteins
2 2 2 0 SCOP 47794 Rad51 N-terminal domain-like
2 2 1 0 SCOP 101576 Supernatant protein factor (SPF), C-terminal domain
2 2 1 0 SCOP 55904 Ornithine decarboxylase C-terminal domain
2 2 1 0 SCOP 81271 TGS-like
2 2 2 0 SCOP 57845 B-box zinc-binding domain
2 2 2 0 SCOP 47769 SAM/Pointed domain
2 2 2 0 SCOP 109905 Surp module (SWAP domain)
2 2 1 0 SCOP 88798 N-terminal, heterodimerisation domain of RBP7 (RpoE)
2 2 2 0 SCOP 63491 BAG domain
2 2 2 0 SCOP 47454 A DNA-binding domain in eukaryotic transcription factors
2 2 2 0 SCOP 110942 HSP90 C-terminal domain
2 2 1 0 SCOP 143885 RGC domain-like
2 2 1 0 SCOP 102848 NSFL1 (p97 ATPase) cofactor p47, SEP domain
2 2 1 0 SCOP 160527 V-type ATPase subunit E-like
2 2 1 0 SCOP 82215 C-terminal autoproteolytic domain of nucleoporin nup98
2 2 1 0 SCOP 82615 Polo-box domain
2 2 1 0 SCOP 140586 Dcp2 domain-like
2 2 1 0 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
2 2 1 0 SCOP 101821 Aminopeptidase/glucanase lid domain
2 2 2 0 SCOP 109728 Hypothetical protein AF0491, middle domain
2 2 2 0 SCOP 101238 XPC-binding domain
1 1 1 0 SCOP 142433 CinA-like
1 1 1 0 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 0 SCOP 56214 4'-phosphopantetheinyl transferase
1 1 1 0 SCOP 110324 Ribosomal L27 protein-like
1 1 1 1 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
1 1 1 1 SCOP 53748 Phosphoglycerate kinase
1 1 1 1 SCOP 50324 Inorganic pyrophosphatase
1 1 1 1 SCOP 89623 Ribose/Galactose isomerase RpiB/AlsB
1 1 1 1 SCOP 55068 Peptide methionine sulfoxide reductase
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 0 SCOP 53633 Carbamate kinase-like
1 1 1 1 SCOP 55821 YrdC/RibB
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 0 SCOP 54285 MoaD/ThiS
1 1 1 0 SCOP 54637 Thioesterase/thiol ester dehydrase-isomerase
1 1 1 1 SCOP 55298 YjgF-like
1 1 1 0 SCOP 63829 Calcium-dependent phosphotriesterase
1 1 1 0 SCOP 69500 DTD-like
1 1 1 0 SCOP 50630 Acid proteases
1 1 1 0 SCOP 63393 RNA polymerase subunits
1 1 1 0 SCOP 89895 FYSH domain
1 1 1 0 SCOP 69103 Arp2/3 complex 16 kDa subunit ARPC5
1 1 1 0 SCOP 51306 LexA/Signal peptidase
1 1 1 0 SCOP 54919 Nucleoside diphosphate kinase, NDK
1 1 1 1 SCOP 118203 Vacuolar ATP synthase subunit C
1 1 1 1 SCOP 69060 Arp2/3 complex 21 kDa subunit ARPC3
1 1 1 0 SCOP 103486 V-type ATP synthase subunit C
1 1 1 0 SCOP 53032 tRNA-intron endonuclease catalytic domain-like
1 1 1 0 SCOP 53056 beta-carbonic anhydrase, cab
1 1 1 1 SCOP 64153 YjeF N-terminal domain-like
1 1 1 0 SCOP 103111 Activator of Hsp90 ATPase, Aha1
1 1 1 1 SCOP 55909 Pentein
1 1 1 1 SCOP 52788 Phosphotyrosine protein phosphatases I
1 1 1 1 SCOP 63562 RPB6/omega subunit-like
1 1 1 0 SCOP 101546 ASF1-like
1 1 1 0 SCOP 111038 YjbQ-like
1 1 1 1 SCOP 51998 PFL-like glycyl radical enzymes
1 1 1 0 SCOP 50494 Trypsin-like serine proteases
1 1 1 0 SCOP 118196 YaeB-like
1 1 1 0 SCOP 47413 lambda repressor-like DNA-binding domains
1 1 1 0 SCOP 56349 DNA breaking-rejoining enzymes
1 1 1 0 SCOP 101744 Rof/RNase P subunit-like
1 1 1 0 SCOP 143990 YbiA-like
1 1 1 0 SCOP 52507 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
1 1 1 0 SCOP 50800 PK beta-barrel domain-like
1 1 1 0 SCOP 54518 Tubby C-terminal domain-like
1 1 1 0 SCOP 69065 RNase III domain-like
1 1 1 0 SCOP 158997 Trm112p-like
1 1 1 0 SCOP 55826 YbaK/ProRS associated domain
1 1 1 1 SCOP 89796 CoA-transferase family III (CaiB/BaiF)
1 1 1 0 SCOP 56747 Prim-pol domain
1 1 1 1 SCOP 110581 Indigoidine synthase A-like
1 1 1 1 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
1 1 1 0 SCOP 55021 ACT-like
1 1 1 0 SCOP 117457 FumA C-terminal domain-like
1 1 1 1 SCOP 110738 Glycerate kinase I
1 1 1 0 SCOP 75011 3-carboxy-cis,cis-mucoante lactonizing enzyme
1 1 1 0 SCOP 159659 Cgl1923-like
1 1 1 0 SCOP 69786 YggU-like
1 1 1 0 SCOP 103196 Roadblock/LC7 domain
1 1 1 1 SCOP 51604 Enolase C-terminal domain-like
1 1 1 0 SCOP 47781 RuvA domain 2-like
1 1 1 0 SCOP 46950 Double-stranded DNA-binding domain
1 1 1 0 SCOP 160350 Rnp2-like
1 1 1 0 SCOP 54984 eEF-1beta-like
1 1 1 0 SCOP 69819 MTH1598-like
1 1 1 1 SCOP 55287 RPB5-like RNA polymerase subunit
1 1 1 0 SCOP 69695 SRP19
1 1 1 0 SCOP 52343 Ferredoxin reductase-like, C-terminal NADP-linked domain
1 1 1 0 SCOP 46589 tRNA-binding arm
1 1 1 0 SCOP 158832 Tex N-terminal region-like
1 1 1 0 SCOP 50156 PDZ domain-like
1 1 1 1 SCOP 51690 Nicotinate/Quinolinate PRTase C-terminal domain-like
1 1 1 0 SCOP 142823 ComB-like
1 1 1 0 SCOP 48619 Phospholipase A2, PLA2
1 1 1 0 SCOP 82114 Riboflavin kinase-like
1 1 1 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 1 SCOP 102645 CoaB-like
1 1 1 1 SCOP 102110 (2r)-phospho-3-sulfolactate synthase ComA
1 1 1 0 SCOP 142921 WGR domain-like
1 1 1 0 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 0 SCOP 52009 Phosphohistidine domain
1 1 1 0 SCOP 50965 Galactose oxidase, central domain
1 1 1 0 SCOP 55658 L9 N-domain-like
1 1 1 0 SCOP 144206 NOB1 zinc finger-like
1 1 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
1 1 1 0 SCOP 63999 Thiamin pyrophosphokinase, catalytic domain
1 1 1 0 SCOP 46966 Spectrin repeat
1 1 1 1 SCOP 54826 Enolase N-terminal domain-like
1 1 1 0 SCOP 55060 GHMP Kinase, C-terminal domain
1 1 1 0 SCOP 68906 SAP domain
1 1 1 0 SCOP 75689 Zinc-binding domain of translation initiation factor 2 beta
1 1 1 1 SCOP 101278 N-terminal domain of adenylylcyclase associated protein, CAP
1 1 1 0 SCOP 118310 AN1-like Zinc finger
1 1 1 0 SCOP 101852 Bacterial fluorinating enzyme, C-terminal domain
1 1 1 0 SCOP 159283 Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain
1 1 1 0 SCOP 54675 Nicotinate/Quinolinate PRTase N-terminal domain-like
1 1 1 0 SCOP 47446 Signal peptide-binding domain
1 1 1 0 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
1 1 1 0 SCOP 82708 R3H domain
1 1 1 0 SCOP 55271 DNA repair protein MutS, domain I
1 1 1 0 SCOP 102522 Bacterial fluorinating enzyme, N-terminal domain
1 1 1 0 SCOP 116742 eIF2alpha middle domain-like
1 1 1 0 SCOP 48652 Tetraspanin
1 1 1 0 SCOP 54277 CAD & PB1 domains
1 1 1 0 SCOP 47895 Transducin (alpha subunit), insertion domain
1 1 1 1 SCOP 82109 MIR domain
1 1 1 0 SCOP 47220 alpha-catenin/vinculin-like
1 1 1 0 SCOP 49303 beta-Galactosidase/glucuronidase domain
1 1 1 1 SCOP 140984 PTPA-like
1 1 1 0 SCOP 49599 TRAF domain-like
1 1 1 1 SCOP 55481 N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
1 1 1 0 SCOP 63707 Ganglioside M2 (gm2) activator
1 1 1 0 SCOP 140102 ISY1 domain-like
1 1 1 0 SCOP 57959 Leucine zipper domain
1 1 1 0 SCOP 143791 DUSP-like
1 1 1 0 SCOP 101233 PWI domain
1 1 1 1 SCOP 64158 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
1 1 1 1 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 1 SCOP 117018 ATP-dependent DNA ligase DNA-binding domain
1 1 1 0 SCOP 110993 eIF-2-alpha, C-terminal domain
1 1 1 1 SCOP 89942 eEF1-gamma domain
1 1 1 0 SCOP 140111 Endosomal sorting complex assembly domain
1 1 1 0 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
1 1 1 0 SCOP 50784 Transcription factor IIA (TFIIA), beta-barrel domain
1 1 1 0 SCOP 53036 Eukaryotic RPB5 N-terminal domain
1 1 1 1 SCOP 50989 Clathrin heavy-chain terminal domain
1 1 1 0 SCOP 101391 Hsp90 co-chaperone CDC37
1 1 1 0 SCOP 46942 Elongation factor TFIIS domain 2
1 1 1 1 SCOP 69340 C-terminal domain of adenylylcyclase associated protein
1 1 1 0 SCOP 89000 post-HMGL domain-like
1 1 1 0 SCOP 47031 Second domain of FERM
1 1 1 0 SCOP 159042 Plus3-like
1 1 1 1 SCOP 88802 Pre-PUA domain
1 1 1 0 SCOP 63862 Thiamin pyrophosphokinase, substrate-binding domain
1 1 1 0 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 55003 PAP/Archaeal CCA-adding enzyme, C-terminal domain
1 1 1 0 SCOP 102860 mRNA decapping enzyme DcpS N-terminal domain
1 1 1 1 SCOP 63887 P-domain of calnexin/calreticulin
1 1 1 0 SCOP 64586 C-terminal domain of ProRS
1 1 1 0 SCOP 53150 DNA repair protein MutS, domain II
1 1 1 0 SCOP 81767 Pre-protein crosslinking domain of SecA
1 1 1 0 SCOP 101224 HAND domain of the nucleosome remodeling ATPase ISWI
1 1 1 0 SCOP 47587 Domain of poly(ADP-ribose) polymerase
1 1 1 0 SCOP 57770 Methionyl-tRNA synthetase (MetRS), Zn-domain
1 1 1 0 SCOP 158230 PRP4-like

Jump to [ Top of page · Assignment statistics ]


The following superfamilies have one or more weak hits:

SCOP superfamily Troponin coil-coiled subunits
SCOP superfamily Head morphogenesis protein gp7
SCOP superfamily Mollusk pheromone
SCOP superfamily Neurotransmitter-gated ion-channel transmembrane pore
SCOP superfamily Hypothetical protein TM0875
SCOP superfamily Collagen-binding domain
SCOP superfamily Gametocyte protein Pfg27
SCOP superfamily TorD-like
SCOP superfamily GatB/YqeY motif
SCOP superfamily Cobalamin adenosyltransferase-like
SCOP superfamily GAT-like domain
SCOP superfamily Sigma2 domain of RNA polymerase sigma factors
SCOP superfamily Sigma3 and sigma4 domains of RNA polymerase sigma factors
SCOP superfamily Positive stranded ssRNA viruses
SCOP superfamily Apical membrane antigen 1
SCOP superfamily GIY-YIG endonuclease
SCOP superfamily AlbA-like
SCOP superfamily SEA domain
SCOP superfamily Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
SCOP superfamily Prokaryotic SH3-related domain
SCOP superfamily N-utilization substance G protein NusG, insert domain
SCOP superfamily BRCA2 tower domain
SCOP superfamily BRCA2 helical domain
SCOP superfamily RuBisCo LSMT C-terminal, substrate-binding domain
SCOP superfamily X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal domain
SCOP superfamily Group V grass pollen allergen
SCOP superfamily Plasmid maintenance system epsilon/zeta, antidote epsilon subunit
SCOP superfamily FF domain
SCOP superfamily Photosystem I subunits PsaA/PsaB
SCOP superfamily Subunit VIII of photosystem I reaction centre, PsaI
SCOP superfamily Bacterial aa3 type cytochrome c oxidase subunit IV
SCOP superfamily Cytochrome c oxidase subunit II-like, transmembrane region
SCOP superfamily Cytochrome c oxidase subunit III-like
SCOP superfamily Cytochrome c oxidase subunit I-like
SCOP superfamily Mitochondrial cytochrome c oxidase subunit IV
SCOP superfamily ABC transporter involved in vitamin B12 uptake, BtuC
SCOP superfamily Gated mechanosensitive channel
SCOP superfamily Family A G protein-coupled receptor-like
SCOP superfamily Adenylylcyclase toxin (the edema factor)
SCOP superfamily Rad50 coiled-coil Zn hook
SCOP superfamily Chemotaxis phosphatase CheZ
SCOP superfamily Mitotic arrest deficient-like 1, Mad1
SCOP superfamily YebC-like
SCOP superfamily Release factor
SCOP superfamily VSV matrix protein
SCOP superfamily Arabinanase/levansucrase/invertase
SCOP superfamily V-region of surface antigen I/II (SA I/II, PAC)
SCOP superfamily Translin
SCOP superfamily Variable surface antigen VlsE
SCOP superfamily C-terminal domain of PLC-beta
SCOP superfamily Colicin E3 receptor domain
SCOP superfamily Eea1 homodimerisation domain
SCOP superfamily Head and neck region of the ectodomain of NDV fusion glycoprotein
SCOP superfamily DsrC, the gamma subunit of dissimilatory sulfite reductase
SCOP superfamily Transcription factor NusA, N-terminal domain
SCOP superfamily Integrin beta tail domain
SCOP superfamily Cell wall binding repeat
SCOP superfamily Tricorn protease N-terminal domain
SCOP superfamily Integrin domains
SCOP superfamily Nuclear receptor coactivator interlocking domain
SCOP superfamily AhpD-like
SCOP superfamily Glutamyl tRNA-reductase dimerization domain
SCOP superfamily Anti-sigma factor AsiA
SCOP superfamily alpha-ketoacid dehydrogenase kinase, N-terminal domain
SCOP superfamily Intermediate filament protein, coiled coil region
SCOP superfamily Phase 1 flagellin
SCOP superfamily DNA-binding domain of intron-encoded endonucleases
SCOP superfamily Methuselah ectodomain
SCOP superfamily YWTD domain
SCOP superfamily SAND domain-like
SCOP superfamily Cytolysin/lectin
SCOP superfamily Olfactory marker protein
SCOP superfamily Outer surface protein C (OspC)
SCOP superfamily LEM domain
SCOP superfamily Methyl-accepting chemotaxis protein (MCP) signaling domain
SCOP superfamily Colicin Ia, N-terminal domain
SCOP superfamily Clostridium neurotoxins, "coiled-coil" domain
SCOP superfamily Variant surface glycoprotein (N-terminal domain)
SCOP superfamily Influenza hemagglutinin (stalk)
SCOP superfamily N-terminal coiled coil domain from apc
SCOP superfamily Outer membrane lipoprotein
SCOP superfamily Multimerization domain of the phosphoprotein from sendai virus
SCOP superfamily Delta-sleep-inducing peptide immunoreactive peptide
SCOP superfamily XRCC4, C-terminal oligomerization domain
SCOP superfamily Coiled-coil dimerization domain from cortexillin I
SCOP superfamily Coiled-coil domain of nucleotide exchange factor GrpE
SCOP superfamily Fibrinogen coiled-coil and central regions
SCOP superfamily Ada DNA repair protein, N-terminal domain (N-Ada 10)
SCOP superfamily HIPIP (high potential iron protein)
SCOP superfamily Invertebrate chitin-binding proteins
SCOP superfamily Thyroglobulin type-1 domain
SCOP superfamily Antifungal protein (AGAFP)
SCOP superfamily TNF receptor-like
SCOP superfamily Serine protease inhibitors
SCOP superfamily Complement control module/SCR domain
SCOP superfamily Cystine-knot cytokines
SCOP superfamily Crambin-like
SCOP superfamily LDL receptor-like module
SCOP superfamily Hairpin loop containing domain-like
SCOP superfamily BPTI-like
SCOP superfamily Leech antihemostatic proteins
SCOP superfamily Scorpion toxin-like
SCOP superfamily Anthrax protective antigen
SCOP superfamily Bcl-2 inhibitors of programmed cell death
SCOP superfamily delta-Endotoxin (insectocide), N-terminal domain
SCOP superfamily Reovirus inner layer core protein p3
SCOP superfamily Upper collar protein gp10 (connector protein)
SCOP superfamily Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
SCOP superfamily Conserved core of transcriptional regulatory protein vp16
SCOP superfamily Penicillin binding protein dimerisation domain
SCOP superfamily C-type lectin-like
SCOP superfamily Peptide deformylase
SCOP superfamily SMAD MH1 domain
SCOP superfamily S-adenosylmethionine decarboxylase
SCOP superfamily PheT/TilS domain
SCOP superfamily Cytochrome b5-like heme/steroid binding domain
SCOP superfamily N-acetylmuramoyl-L-alanine amidase-like
SCOP superfamily Thymidylate synthase/dCMP hydroxymethylase
SCOP superfamily PR-1-like
SCOP superfamily Mog1p/PsbP-like
SCOP superfamily CytB endotoxin-like
SCOP superfamily Tetrahydrobiopterin biosynthesis enzymes-like
SCOP superfamily Cyanase C-terminal domain
SCOP superfamily Pepsin inhibitor-3
SCOP superfamily Nitrite/Sulfite reductase N-terminal domain-like
SCOP superfamily HMA, heavy metal-associated domain
SCOP superfamily Protease propeptides/inhibitors
SCOP superfamily Elongation factor Ts (EF-Ts), dimerisation domain
SCOP superfamily Molybdopterin synthase subunit MoaE
SCOP superfamily Chalcone isomerase
SCOP superfamily MHC antigen-recognition domain
SCOP superfamily Superantigen toxins, C-terminal domain
SCOP superfamily Staphylokinase/streptokinase
SCOP superfamily Prion-like
SCOP superfamily RNase A-like
SCOP superfamily Lysozyme-like
SCOP superfamily "Helical backbone" metal receptor
SCOP superfamily Aspartate/ornithine carbamoyltransferase
SCOP superfamily Formyltransferase
SCOP superfamily Molybdenum cofactor biosynthesis proteins
SCOP superfamily HybD-like
SCOP superfamily PTS system IIB component-like
SCOP superfamily Caspase-like
SCOP superfamily SpoIIaa-like
SCOP superfamily Barstar-related
SCOP superfamily FAD-linked oxidoreductase
SCOP superfamily Dihydropteroate synthetase-like
SCOP superfamily RuBisCo, C-terminal domain
SCOP superfamily E2 regulatory, transactivation domain
SCOP superfamily Head decoration protein D (gpD, major capsid protein D)
SCOP superfamily delta-Endotoxin (insectocide), middle domain
SCOP superfamily Vitelline membrane outer protein-I (VMO-I)
SCOP superfamily Outer surface protein
SCOP superfamily Peptidase/esterase 'gauge' domain
SCOP superfamily Nitrous oxide reductase, N-terminal domain
SCOP superfamily Oncogene products
SCOP superfamily Lipocalins
SCOP superfamily Agglutinin
SCOP superfamily PRC-barrel domain
SCOP superfamily TIMP-like
SCOP superfamily Bacterial enterotoxins
SCOP superfamily N-terminal domains of the minor coat protein g3p
SCOP superfamily DNA-binding domain of retroviral integrase
SCOP superfamily ISP domain
SCOP superfamily Baculovirus p35 protein
SCOP superfamily Soluble secreted chemokine inhibitor, VCCI
SCOP superfamily Hyaluronate lyase-like, C-terminal domain
SCOP superfamily Carboxypeptidase regulatory domain-like
SCOP superfamily p53-like transcription factors
SCOP superfamily Carbohydrate-binding domain
SCOP superfamily Diphtheria toxin, C-terminal domain
SCOP superfamily Superoxide reductase-like
SCOP superfamily Transglutaminase, two C-terminal domains
SCOP superfamily Fibronectin type III
SCOP superfamily Immunoglobulin
SCOP superfamily Moesin tail domain
SCOP superfamily Chorismate mutase II
SCOP superfamily Serum albumin-like
SCOP superfamily Tetracyclin repressor-like, C-terminal domain
SCOP superfamily A virus capsid protein alpha-helical domain
SCOP superfamily Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
SCOP superfamily TrpR-like
SCOP superfamily Chondroitin AC/alginate lyase
SCOP superfamily Seven-hairpin glycosidases
SCOP superfamily R1 subunit of ribonucleotide reductase, N-terminal domain
SCOP superfamily An anticodon-binding domain of class I aminoacyl-tRNA synthetases
SCOP superfamily Transcription factor STAT-4 N-domain
SCOP superfamily Di-copper centre-containing domain
SCOP superfamily N-terminal domain of DnaB helicase
SCOP superfamily NusB-like
SCOP superfamily DEATH domain
SCOP superfamily Annexin
SCOP superfamily Apolipophorin-III
SCOP superfamily C-terminal domain of RNA polymerase alpha subunit
SCOP superfamily PAH2 domain
SCOP superfamily CO dehydrogenase ISP C-domain like
SCOP superfamily Cytochrome c oxidase subunit h
SCOP superfamily STAT
SCOP superfamily GST C-terminal domain-like
SCOP superfamily Ribbon-helix-helix
SCOP superfamily HLH, helix-loop-helix DNA-binding domain
SCOP superfamily Transcription factor IIA (TFIIA), alpha-helical domain
SCOP superfamily Aspartate receptor, ligand-binding domain
SCOP superfamily Apolipoprotein
SCOP superfamily Mitochondrial import receptor subunit Tom20
SCOP superfamily Fertilization protein
SCOP superfamily Bacterial immunoglobulin/albumin-binding domains
SCOP superfamily Ribosomal protein S20
SCOP superfamily Tubulin chaperone cofactor A
SCOP superfamily Eukaryotic DNA topoisomerase I, dispensable insert domain
SCOP superfamily DNA polymerase III theta subunit-like
SCOP superfamily RILP dimerisation region
SCOP superfamily Zinc hairpin stack
SCOP superfamily CHY zinc finger-like
SCOP superfamily MetI-like
SCOP superfamily MgtE membrane domain-like
SCOP superfamily MAPEG domain-like
SCOP superfamily SNF-like
SCOP superfamily ATP synthase D chain-like
SCOP superfamily Photosystem II reaction center protein I, PsbI
SCOP superfamily Viral glycoprotein ectodomain-like
SCOP superfamily SSO1389-like
SCOP superfamily YacF-like
SCOP superfamily PH0156-like
SCOP superfamily Taf5 N-terminal domain-like
SCOP superfamily NE1680-like
SCOP superfamily gpW/gp25-like
SCOP superfamily YueI-like
SCOP superfamily BH3703-like
SCOP superfamily AMPKBI-like
SCOP superfamily FlaG-like
SCOP superfamily NRDP1 C-terminal domain-like
SCOP superfamily NSP3A-like
SCOP superfamily YdhG-like
SCOP superfamily YerB-like
SCOP superfamily CobE/GbiG C-terminal domain-like
SCOP superfamily EreA/ChaN-like
SCOP superfamily PA1994-like
SCOP superfamily HIN-2000 domain-like
SCOP superfamily Dom34/Pelota N-terminal domain-like
SCOP superfamily YopX-like
SCOP superfamily NEAT domain-like
SCOP superfamily PMT central region-like
SCOP superfamily AGR C 984p-like
SCOP superfamily MG296-like
SCOP superfamily ENT-like
SCOP superfamily RbcX-like
SCOP superfamily BH3980-like
SCOP superfamily FLJ32549 domain-like
SCOP superfamily IVS-encoded protein-like
SCOP superfamily DsbB-like
SCOP superfamily Bacillus cereus metalloprotein-like
SCOP superfamily TM1646-like
SCOP superfamily SOCS box-like
SCOP superfamily occludin/ELL-like
SCOP superfamily Sec2 N-terminal region
SCOP superfamily MPN010-like
SCOP superfamily CSL zinc finger
SCOP superfamily Tim10-like
SCOP superfamily E2F-DP heterodimerization region
SCOP superfamily Peptidoglycan deacetylase N-terminal noncatalytic region
SCOP superfamily ORC1-binding domain
SCOP superfamily L,D-transpeptidase pre-catalytic domain-like
SCOP superfamily UbiD C-terminal domain-like
SCOP superfamily NE0471 N-terminal domain-like
SCOP superfamily ERH-like
SCOP superfamily PF0523-like
SCOP superfamily STIV B116-like
SCOP superfamily SARS receptor-binding domain-like
SCOP superfamily GK1464-like
SCOP superfamily VC0467-like
SCOP superfamily Transposase IS200-like
SCOP superfamily RibA-like
SCOP superfamily MAL13P1.257-like
SCOP superfamily PTSIIA/GutA-like
SCOP superfamily Agglutinin HPA-like
SCOP superfamily FtsH protease domain-like
SCOP superfamily Duffy binding domain-like
SCOP superfamily DNA terminal protein
SCOP superfamily PriB N-terminal domain-like
SCOP superfamily GUN4-like
SCOP superfamily TROVE domain-like
SCOP superfamily Pseudo ankyrin repeat-like
SCOP superfamily USP8 N-terminal domain-like
SCOP superfamily YidB-like
SCOP superfamily SP0561-like
SCOP superfamily EB1 dimerisation domain-like
SCOP superfamily EF2947-like
SCOP superfamily HIV integrase-binding domain
SCOP superfamily MukF C-terminal domain-like
SCOP superfamily FlgN-like
SCOP superfamily LemA-like
SCOP superfamily PE/PPE dimer-like
SCOP superfamily VPS28 C-terminal domain-like
SCOP superfamily MW0975(SA0943)-like
SCOP superfamily Synuclein
SCOP superfamily Proton glutamate symport protein
SCOP superfamily Phosphoprotein M1, C-terminal domain
SCOP superfamily Putative glucosidase YicI, C-terminal domain
SCOP superfamily Hypothetical protein PA1324
SCOP superfamily Hypothetical protein MPN330
SCOP superfamily YfbU-like
SCOP superfamily RNA-binding protein She2p
SCOP superfamily EspA/CesA-like
SCOP superfamily Hypothetical protein YqbG
SCOP superfamily XseB-like
SCOP superfamily DNA methylase specificity domain
SCOP superfamily Coronavirus S2 glycoprotein
SCOP superfamily Geminin coiled-coil domain
SCOP superfamily YAP1 redox domain
SCOP superfamily OmpH-like
SCOP superfamily AF1104-like
SCOP superfamily Recombination protein RecR
SCOP superfamily Hypothetical protein yfbM
SCOP superfamily ParB/Sulfiredoxin
SCOP superfamily TTHA0583/YokD-like
SCOP superfamily GlpP-like
SCOP superfamily AbfB domain
SCOP superfamily Ctag/Cox11
SCOP superfamily ApaG-like
SCOP superfamily GDNF receptor-like
SCOP superfamily Her-1
SCOP superfamily Glycolipid transfer protein, GLTP
SCOP superfamily Triger factor/SurA peptide-binding domain-like
SCOP superfamily Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
SCOP superfamily CAPPD, an extracellular domain of amyloid beta A4 protein
SCOP superfamily PhoU-like
SCOP superfamily HBS1-like domain
SCOP superfamily DnaK suppressor protein DksA, alpha-hairpin domain
SCOP superfamily G protein-binding domain
SCOP superfamily Hypothetical protein Ta0289 C-terminal domain
SCOP superfamily SBT domain
SCOP superfamily Plexin repeat
SCOP superfamily Respiratory nitrate reductase 1 gamma chain
SCOP superfamily Preprotein translocase SecE subunit
SCOP superfamily CheC-like
SCOP superfamily Hypothetical protein TT1725
SCOP superfamily Cell division protein ZapA-like
SCOP superfamily Stabilizer of iron transporter SufD
SCOP superfamily Sema domain
SCOP superfamily GyrA/ParC C-terminal domain-like
SCOP superfamily Replicase NSP9
SCOP superfamily Stathmin
SCOP superfamily Eukaryotic initiation factor 4f subunit eIF4g, eIF4e-binding domain
SCOP superfamily C-terminal domain of Ku80
SCOP superfamily all-alpha NTP pyrophosphatases
SCOP superfamily Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
SCOP superfamily Superantigen MAM
SCOP superfamily YcfC-like
SCOP superfamily KaiA/RbsU domain
SCOP superfamily Oxygen-evolving enhancer protein 3,
SCOP superfamily Staphylocoagulase
SCOP superfamily Typo IV secretion system protein TraC
SCOP superfamily IP3 receptor type 1 binding core, domain 2

Jump to [ Top of page · Assignment statistics ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.