SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

  Home > Genomes > Superfamily assignments for Bacillus anthracis str. A2012


Bacillus anthracis str. A2012 superfamily assignments

Taxonomy
Taxonomy browser entry

Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group; Bacillus anthracis; Bacillus anthracis str. A2012

Downloads
Fasta format sequences
Domain assignments

Jump to [ Top of page · Domain assignments ]

Assignment statistics

Sequences: 297 total
74 (25 %) with assignment
208 average length
28 % amino acid coverage
Domains: 84 total
49 unique superfamilies
11 unique families
232 average length
1.7 average superfamily size
42 % formed by duplication
Domain combinations: 9 domain pairs
56 unique architectures

Jump to [ Top of page · Assignment statistics ]

Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies
13 12 6 0 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
4 4 3 0 SCOP 46689 Homeodomain-like
4 4 3 0 SCOP 46785 "Winged helix" DNA-binding domain
4 4 2 0 SCOP 47413 lambda repressor-like DNA-binding domains
4 4 2 0 SCOP 56349 DNA breaking-rejoining enzymes
3 3 2 0 SCOP 81301 Nucleotidyltransferase
3 3 2 0 SCOP 56672 DNA/RNA polymerases
3 2 2 1 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
3 3 1 0 SCOP 63520 PTS-regulatory domain, PRD
2 2 1 0 SCOP 46955 Putative DNA-binding domain
2 2 1 1 SCOP 56988 Anthrax protective antigen
2 2 1 0 SCOP 53098 Ribonuclease H-like
1 1 1 1 SCOP 81298 Adenylylcyclase toxin (the edema factor)
1 1 1 0 SCOP 81593 Nucleotidyltransferase substrate binding subunit/domain
1 1 1 0 SCOP 100879 Lesion bypass DNA polymerase (Y-family), little finger domain
1 1 1 0 SCOP 53041 Resolvase-like
1 1 1 1 SCOP 50814 Lipocalins
1 1 1 0 SCOP 56973 Aerolisin/ETX pore-forming domain
1 1 1 0 SCOP 52413 UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
1 1 1 0 SCOP 158442 DsbB-like
1 1 1 0 SCOP 140453 EsxAB dimer-like
1 1 1 0 SCOP 160631 SMI1/KNR4-like
1 1 1 0 SCOP 52490 Tubulin nucleotide-binding domain-like
1 1 1 0 SCOP 53623 MurD-like peptide ligases, catalytic domain
1 1 1 0 SCOP 48498 Tetracyclin repressor-like, C-terminal domain
1 1 1 1 SCOP 159121 BC4932-like
1 1 1 1 SCOP 50199 Staphylococcal nuclease
1 1 1 0 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
1 1 1 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
1 1 1 0 SCOP 53955 Lysozyme-like
1 1 1 0 SCOP 52467 DHS-like NAD/FAD-binding domain
1 1 1 0 SCOP 51735 NAD(P)-binding Rossmann-fold domains
1 1 1 0 SCOP 52833 Thioredoxin-like
1 1 1 0 SCOP 56300 Metallo-dependent phosphatases
1 1 1 0 SCOP 52402 Adenine nucleotide alpha hydrolases-like
1 1 1 1 SCOP 53850 Periplasmic binding protein-like II
1 1 1 0 SCOP 48452 TPR-like
1 1 1 0 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
1 1 1 0 SCOP 53187 Zn-dependent exopeptidases
1 1 1 1 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
1 1 1 0 SCOP 50182 Sm-like ribonucleoproteins
1 1 1 0 SCOP 48317 Acid phosphatase/Vanadium-dependent haloperoxidase
1 1 1 0 SCOP 54001 Cysteine proteinases
1 1 1 0 SCOP 51306 LexA/Signal peptidase
1 1 1 1 SCOP 56399 ADP-ribosylation
1 1 1 0 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
1 1 1 0 SCOP 57783 Zinc beta-ribbon
1 1 1 1 SCOP 117782 YbjQ-like
1 1 1 0 SCOP 53448 Nucleotide-diphospho-sugar transferases

Jump to [ Top of page · Assignment statistics ]


The following superfamilies have one or more weak hits:

SCOP superfamily C-terminal, gelsolin-like domain of Sec23/24
SCOP superfamily Transmembrane di-heme cytochromes
SCOP superfamily Zinc-binding domain of translation initiation factor 2 beta
SCOP superfamily DNA-binding C-terminal domain of the transcription factor MotA
SCOP superfamily Glutamyl tRNA-reductase dimerization domain
SCOP superfamily Tropomyosin
SCOP superfamily DNA primase core
SCOP superfamily His-Me finger endonucleases
SCOP superfamily Phosphofructokinase
SCOP superfamily Restriction endonuclease-like
SCOP superfamily PTS system IIB component-like
SCOP superfamily Nitrous oxide reductase, N-terminal domain
SCOP superfamily beta-Galactosidase/glucuronidase domain
SCOP superfamily lambda integrase-like, N-terminal domain
SCOP superfamily GST C-terminal domain-like
SCOP superfamily Signal peptide-binding domain
SCOP superfamily 4-helical cytokines
SCOP superfamily Fe,Mn superoxide dismutase (SOD), N-terminal domain
SCOP superfamily tRNA-binding arm
SCOP superfamily Chaperone J-domain
SCOP superfamily PspA lactotransferrin-binding region
SCOP superfamily MetI-like
SCOP superfamily MgtE membrane domain-like
SCOP superfamily SNF-like
SCOP superfamily Phosphoprotein oligomerization domain-like
SCOP superfamily BLRF2-like
SCOP superfamily EreA/ChaN-like
SCOP superfamily PSPTO4464-like
SCOP superfamily YheA/YmcA-like
SCOP superfamily Rhomboid-like
SCOP superfamily ISY1 domain-like
SCOP superfamily RNA-binding protein She2p
SCOP superfamily Triger factor/SurA peptide-binding domain-like
SCOP superfamily BAR/IMD domain-like
SCOP superfamily Respiratory nitrate reductase 1 gamma chain
SCOP superfamily NagB/RpiA/CoA transferase-like

Jump to [ Top of page · Assignment statistics ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

Please send feedback, comments or questions to superfamily@cs.bris.ac.uk or use the feedback form.

© Copyright 2013 The SUPERFAMILY authors and Julian Gough.