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Bacillus anthracis str. A2012 family assignments

Taxonomy
Taxonomy browser entry

Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group; Bacillus anthracis; Bacillus anthracis str. A2012

Downloads
Fasta format sequences
Domain assignments

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Assignment statistics

Sequences: 297 total
74 (25 %) with assignment
208 average length
28 % amino acid coverage
Domains: 84 total
49 unique superfamilies
11 unique families
232 average length
1.7 average superfamily size
42 % formed by duplication
Domain combinations: 9 domain pairs
56 unique architectures

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Family assignments

Domains

Proteins

SCOP link

Families
3 2 SCOP 69775 Anthrax toxin lethal factor, N- and C-terminal domains
2 2 SCOP 56989 Anthrax protective antigen
1 1 SCOP 143906 Gamma-glutamyltranspeptidase-like
1 1 SCOP 117783 YbjQ-like
1 1 SCOP 101863 Hypothetical protein YodA
1 1 SCOP 69887 Adenylylcyclase toxin (the edema factor)
1 1 SCOP 50200 Staphylococcal nuclease
1 1 SCOP 56713 Prokaryotic type I DNA topoisomerase
1 1 SCOP 56400 ADP-ribosylating toxins
1 1 SCOP 53851 Phosphate binding protein-like
1 1 SCOP 159122 BC4932-like

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The following families have one or more weak hits:

SCOP family DsbB-like
SCOP family NlpC/P60
SCOP family ESAT-6 like
SCOP family FtsK C-terminal domain-like
SCOP family RelA/SpoT domain
SCOP family N-acetylmuramoyl-L-alanine amidase-like
SCOP family Lesion bypass DNA polymerase (Y-family), catalytic domain
SCOP family Lesion bypass DNA polymerase (Y-family), little finger domain
SCOP family HEPN domain
SCOP family Pleiotropic translational regulator Hfq
SCOP family Lambda integrase-like, catalytic core
SCOP family glucose-1-phosphate thymidylyltransferase
SCOP family Transposase inhibitor (Tn5 transposase)
SCOP family gamma,delta resolvase, catalytic domain
SCOP family RecA protein-like (ATPase-domain)
SCOP family Nitrogenase iron protein-like
SCOP family Tubulin, GTPase domain
SCOP family UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
SCOP family 6-phosphogluconate dehydrogenase-like, N-terminal domain
SCOP family Type 1 signal peptidase
SCOP family Tetracyclin repressor-like, C-terminal domain
SCOP family UDP-glucose/GDP-mannose dehydrogenase dimerisation domain
SCOP family lambda integrase-like, N-terminal domain
SCOP family SinR domain-like
SCOP family Tetracyclin repressor-like, N-terminal domain

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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