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Helicobacter pylori F57 family assignments

Taxonomy
Taxonomy browser entry

Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori; Helicobacter pylori F57

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Fasta format sequences
Domain assignments


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Assignment statistics

Sequences: 1520 total
972 (64 %) with assignment
321 average length
57 % amino acid coverage
Domains: 1389 total
508 unique superfamilies
299 unique families
287 average length
2.7 average superfamily size
63 % formed by duplication
Domain combinations: 261 domain pairs
606 unique architectures

Jump to [ Top of page · Assignment statistics ]

Family assignments

Domains

Proteins

SCOP link

Families

12 11 SCOP 52686 ABC transporter ATPase domain-like
12 10 SCOP 81269 Extended AAA-ATPase domain
9 9 SCOP 52375 Class I aminoacyl-tRNA synthetases (RS), catalytic domain
8 8 SCOP 55682 Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
8 6 SCOP 81268 Tandem AAA-ATPase domain
7 7 SCOP 51751 Tyrosine-dependent oxidoreductases
7 7 SCOP 52592 G proteins
6 6 SCOP 52670 RecA protein-like (ATPase-domain)
6 6 SCOP 53851 Phosphate binding protein-like
6 6 SCOP 81902 HCP-like
5 5 SCOP 52652 Nitrogenase iron protein-like
5 5 SCOP 53417 GABA-aminotransferase-like
4 4 SCOP 52318 Class I glutamine amidotransferases (GAT)
4 2 SCOP 53068 Actin/HSP70
4 2 SCOP 53902 Thiolase-related
4 4 SCOP 88786 C5 cytosine-specific DNA methylase, DCM
3 3 SCOP 48558 L-aspartase/fumarase
3 3 SCOP 50448 Elongation factors
3 3 SCOP 50678 ValRS/IleRS/LeuRS editing domain
3 2 SCOP 51381 Tryptophan biosynthesis enzymes
3 3 SCOP 52403 N-type ATP pyrophosphatases
3 2 SCOP 52441 BC N-terminal domain-like
3 3 SCOP 53687 Tryptophan synthase beta subunit-like PLP-dependent enzymes
3 3 SCOP 55348 GAPDH-like
3 1 SCOP 55974 S-adenosylmethionine synthetase
3 2 SCOP 56067 BC ATP-binding domain-like
3 3 SCOP 56948 Ligand-gated protein channel
2 1 SCOP 46685 Di-heme cytochrome c peroxidase
2 2 SCOP 47241 Ferritin
2 2 SCOP 47324 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
2 2 SCOP 47918 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 SCOP 50282 Cold shock DNA-binding domain-like
2 2 SCOP 51396 FMN-linked oxidoreductases
2 2 SCOP 51413 Inosine monophosphate dehydrogenase (IMPDH)
2 2 SCOP 51420 Alanine racemase-like, N-terminal domain
2 2 SCOP 51570 Class I aldolase
2 2 SCOP 51800 Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
2 2 SCOP 51830 Formate/glycerate dehydrogenases, NAD-domain
2 2 SCOP 51883 Aminoacid dehydrogenase-like, C-terminal domain
2 2 SCOP 52901 Glutathione peroxidase-like
2 1 SCOP 53080 Acetokinase-like
2 2 SCOP 53099 Ribonuclease H
2 2 SCOP 53168 Purine and uridine phosphorylases
2 2 SCOP 53402 Cystathionine synthase-like
2 2 SCOP 53620 Thiamin biosynthesis kinases
2 2 SCOP 53707 Formate dehydrogenase/DMSO reductase, domains 1-3
2 2 SCOP 54212 Translational machinery components
2 1 SCOP 54981 EF-G/eEF-2 domains III and V
2 2 SCOP 55209 Enolpyruvate transferase, EPT
2 2 SCOP 55921 Creatinase/aminopeptidase
2 2 SCOP 56323 ADC synthase
2 2 SCOP 56713 Prokaryotic type I DNA topoisomerase
2 2 SCOP 64519 Phase 1 flagellin
2 2 SCOP 68901 Cytidylytransferase
2 2 SCOP 75621 Release factor
2 1 SCOP 82867 Multidrug efflux transporter AcrB transmembrane domain
2 2 SCOP 89572 Biotin dependent carboxylase carboxyltransferase domain
2 2 SCOP 142721 PyrH-like
2 1 SCOP 143860 Polyphosphate kinase C-terminal domain
2 2 SCOP 159595 NLBH-like
2 2 SCOP 159794 FucT-like
2 2 SCOP 161071 SNF-like
1 1 SCOP 46549 Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
1 1 SCOP 46610 Fe,Mn superoxide dismutase (SOD), N-terminal domain
1 1 SCOP 46947 Ribosomal protein S13
1 1 SCOP 46978 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
1 1 SCOP 47064 Ribosomal protein S15
1 1 SCOP 47253 Ribonucleotide reductase-like
1 1 SCOP 47974 Ribosomal protein S7
1 1 SCOP 48030 FliG
1 1 SCOP 48109 Carbamoyl phosphate synthetase, large subunit connection domain
1 1 SCOP 48169 R1 subunit of ribonucleotide reductase, N-terminal domain
1 1 SCOP 48184 Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI)
1 1 SCOP 48257 Citrate synthase
1 1 SCOP 48577 Isoprenyl diphosphate synthases
1 1 SCOP 48593 GroEL chaperone, ATPase domain
1 1 SCOP 50114 C-terminal domain of ribosomal protein L2
1 1 SCOP 50136 Alcohol dehydrogenase-like, N-terminal domain
1 1 SCOP 50194 Ribosomal protein L14
1 1 SCOP 50325 Inorganic pyrophosphatase
1 1 SCOP 50342 CheW-like
1 1 SCOP 50461 Ribosomal protein L3
1 1 SCOP 50466 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
1 1 SCOP 50495 Prokaryotic proteases
1 1 SCOP 50693 Pyruvoyl dependent aspartate decarboxylase, ADC
1 1 SCOP 51070 Carbonic anhydrase
1 1 SCOP 51162 UDP N-acetylglucosamine acyltransferase
1 1 SCOP 51171 GlmU C-terminal domain-like
1 1 SCOP 51247 BC C-terminal domain-like
1 1 SCOP 51279 Urease, beta-subunit
1 1 SCOP 51284 dUTPase-like
1 1 SCOP 51339 alpha-Subunit of urease
1 1 SCOP 51352 Triosephosphate isomerase (TIM)
1 1 SCOP 51372 D-ribulose-5-phosphate 3-epimerase
1 1 SCOP 51375 Decarboxylase
1 1 SCOP 51392 Thiamin phosphate synthase
1 1 SCOP 51560 alpha-subunit of urease, catalytic domain
1 1 SCOP 51591 Class II FBP aldolase
1 1 SCOP 51594 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
1 1 SCOP 51599 Class I DAHP synthetase
1 1 SCOP 51605 Enolase
1 1 SCOP 51691 NadC C-terminal domain-like
1 1 SCOP 51714 tRNA-guanine transglycosylase
1 1 SCOP 51718 Dihydropteroate synthetase
1 1 SCOP 51727 Uroporphyrinogen decarboxylase, UROD
1 1 SCOP 51736 Alcohol dehydrogenase-like, C-terminal domain
1 1 SCOP 51868 6-phosphogluconate dehydrogenase-like, N-terminal domain
1 1 SCOP 51934 Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
1 1 SCOP 52002 R1 subunit of ribonucleotide reductase, C-terminal domain
1 1 SCOP 52017 LeuD-like
1 1 SCOP 52022 Carbamoyl phosphate synthetase, small subunit N-terminal domain
1 1 SCOP 52030 GroEL-like chaperone, apical domain
1 1 SCOP 52097 Clp protease, ClpP subunit
1 1 SCOP 52100 Tail specific protease, catalytic domain
1 1 SCOP 52122 Lumazine synthase
1 1 SCOP 52142 Uracil-DNA glycosylase
1 1 SCOP 52162 Ribosomal protein L13
1 1 SCOP 52167 Ribosomal protein L4
1 1 SCOP 52219 Flavodoxin-related
1 1 SCOP 52305 Type II 3-dehydroquinate dehydratase
1 1 SCOP 52314 Ribosomal protein S2
1 1 SCOP 52397 Adenylyltransferase
1 1 SCOP 52419 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
1 1 SCOP 52491 Tubulin, GTPase domain
1 1 SCOP 52508 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
1 1 SCOP 52541 Nucleotide and nucleoside kinases
1 1 SCOP 52944 ATP synthase (F1-ATPase), gamma subunit
1 1 SCOP 53057 beta-carbonic anhydrase, cab
1 1 SCOP 53138 Ribosomal protein L18 and S11
1 1 SCOP 53179 Peptidyl-tRNA hydrolase-like
1 1 SCOP 53201 Leucine aminopeptidase, C-terminal domain
1 1 SCOP 53204 Bacterial dinuclear zinc exopeptidases
1 1 SCOP 53219 MogA-like
1 1 SCOP 53224 Aminoacid dehydrogenases
1 1 SCOP 53272 Phosphoribosyltransferases (PRTases)
1 1 SCOP 53296 Phosphoribosylpyrophosphate synthetase-like
1 1 SCOP 53329 Formyltransferase
1 1 SCOP 53384 AAT-like
1 1 SCOP 53461 UDP-glucose pyrophosphorylase
1 1 SCOP 53660 Dimeric isocitrate & isopropylmalate dehydrogenases
1 1 SCOP 53672 Aspartate/ornithine carbamoyltransferase
1 1 SCOP 53682 Aspartate/glutamate racemase
1 1 SCOP 53698 double-SIS domain
1 1 SCOP 53701 Phosphoglucose isomerase, PGI
1 1 SCOP 53721 ALDH-like
1 1 SCOP 53733 Aconitase iron-sulfur domain
1 1 SCOP 53739 Phosphoglucomutase, first 3 domains
1 1 SCOP 53749 Phosphoglycerate kinase
1 1 SCOP 53775 Glutaminase/Asparaginase
1 1 SCOP 53801 Ferrochelatase
1 1 SCOP 53914 Chalcone synthase-like
1 1 SCOP 54112 Urease, gamma-subunit
1 1 SCOP 54224 DNA gyrase/MutL, second domain
1 1 SCOP 54229 Ribonuclease PH domain 1-like
1 1 SCOP 54312 2Fe-2S ferredoxin domains from multidomain proteins
1 1 SCOP 54571 Ribosomal protein S19
1 1 SCOP 54632 CBS-domain pair
1 1 SCOP 54720 Fe,Mn superoxide dismutase (SOD), C-terminal domain
1 1 SCOP 54748 Ribosomal L11/L12e N-terminal domain
1 1 SCOP 54811 GMP synthetase C-terminal dimerisation domain
1 1 SCOP 54815 Prokaryotic type KH domain (KH-domain type II)
1 1 SCOP 54822 Ribosomal protein S3 C-terminal domain
1 1 SCOP 54827 Enolase N-terminal domain-like
1 1 SCOP 54920 Nucleoside diphosphate kinase, NDK
1 1 SCOP 55000 Ribosomal protein S10
1 1 SCOP 55041 Molybdenum cofactor biosynthesis protein C, MoaC
1 1 SCOP 55069 Peptide methionine sulfoxide reductase
1 1 SCOP 55178 Ribosomal protein S4
1 1 SCOP 55187 Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
1 1 SCOP 55195 Ribosome recycling factor, RRF
1 1 SCOP 55283 Ribosomal protein L5
1 1 SCOP 55299 YjgF/L-PSP
1 1 SCOP 55376 Glucose 6-phosphate dehydrogenase-like
1 1 SCOP 55621 GTP cyclohydrolase I
1 1 SCOP 55875 Heat shock protein 90, HSP90, N-terminal domain
1 1 SCOP 55879 DNA gyrase/MutL, N-terminal domain
1 1 SCOP 55884 Histidine kinase
1 1 SCOP 55932 Glutamine synthetase catalytic domain
1 1 SCOP 56043 PurM C-terminal domain-like
1 1 SCOP 56048 Ribosomal protein S8
1 1 SCOP 56054 Ribosomal protein L6
1 1 SCOP 56096 Adenylation domain of NAD+-dependent DNA ligase
1 1 SCOP 56220 DNase I-like
1 1 SCOP 56236 Class II glutamine amidotransferases
1 1 SCOP 56251 Proteasome subunits
1 1 SCOP 56421 Peptide deformylase
1 1 SCOP 56426 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
1 1 SCOP 56635 Heme-dependent catalases
1 1 SCOP 56673 DNA polymerase I
1 1 SCOP 56720 Type II DNA topoisomerase
1 1 SCOP 56732 DNA primase DnaG catalytic core
1 1 SCOP 56753 D-aminoacid aminotransferase-like PLP-dependent enzymes
1 1 SCOP 56763 Nickel-iron hydrogenase, large subunit
1 1 SCOP 56771 Nickel-iron hydrogenase, small subunit
1 1 SCOP 56797 Dehydroquinate synthase, DHQS
1 1 SCOP 56802 Acetyl-CoA synthetase-like
1 1 SCOP 56809 Ribosomal protein L1
1 1 SCOP 56910 Fumarate reductase respiratory complex cytochrome b subunit, FrdC
1 1 SCOP 63893 Pyridoxine 5'-phosphate synthase
1 1 SCOP 63917 Dihydroorotase
1 1 SCOP 63976 Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
1 1 SCOP 63984 Sir2 family of transcriptional regulators
1 1 SCOP 64006 Undecaprenyl diphosphate synthase
1 1 SCOP 64154 YjeF N-terminal domain-like
1 1 SCOP 64159 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
1 1 SCOP 64162 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, catalytic domain
1 1 SCOP 64168 SurE-like
1 1 SCOP 64264 Prokaryotic ribosomal protein L17
1 1 SCOP 64294 Autoinducer-2 production protein LuxS
1 1 SCOP 64372 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
1 1 SCOP 64485 RNA-polymerase beta
1 1 SCOP 64490 RNA-polymerase beta-prime
1 1 SCOP 64511 Phosphoserine phosphatase
1 1 SCOP 69544 Hypothetical protein HI0319 (YecO)
1 1 SCOP 69560 Mycolic acid cyclopropane synthase
1 1 SCOP 69599 mono-SIS domain
1 1 SCOP 69766 IpsF-like
1 1 SCOP 74656 CoA transferase alpha subunit-like
1 1 SCOP 74657 CoA transferase beta subunit-like
1 1 SCOP 74732 Ribosomal protein L20
1 1 SCOP 74779 Aconitase B, N-terminal domain
1 1 SCOP 74983 Small protein B (SmpB)
1 1 SCOP 75041 SelR domain
1 1 SCOP 75305 Amidase signature (AS) enzymes
1 1 SCOP 75323 Exonuclease RecJ
1 1 SCOP 75626 YebC-like
1 1 SCOP 75648 ABC transporter involved in vitamin B12 uptake, BtuC
1 1 SCOP 81642 Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
1 1 SCOP 81768 Pre-protein crosslinking domain of SecA
1 1 SCOP 81887 Helical scaffold and wing domains of SecA
1 1 SCOP 82052 Obg GTP-binding protein N-terminal domain
1 1 SCOP 82267 TatD Mg-dependent DNase-like
1 1 SCOP 82583 G domain-linked domain
1 1 SCOP 82749 FemXAB nonribosomal peptidyltransferases
1 1 SCOP 88683 Eukaryotic ODC-like
1 1 SCOP 88735 TK-like Pyr module
1 1 SCOP 88760 TK-like PP module
1 1 SCOP 88947 Sigma2 domain of RNA polymerase sigma factors
1 1 SCOP 89503 Ketopantoate hydroxymethyltransferase PanB
1 1 SCOP 89624 Ribose/Galactose isomerase RpiB/AlsB
1 1 SCOP 89629 tRNA(m1G37)-methyltransferase TrmD
1 1 SCOP 89743 N5-glutamine methyltransferase, HemK
1 1 SCOP 89784 ADP-heptose LPS heptosyltransferase II
1 1 SCOP 89827 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC
1 1 SCOP 90124 ABC transporter transmembrane region
1 1 SCOP 100921 Heat shock protein 70kD (HSP70), peptide-binding domain
1 1 SCOP 101340 HD domain
1 1 SCOP 101349 3-Methyladenine DNA glycosylase III (MagIII)
1 1 SCOP 101354 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 SCOP 101458 TENA/THI-4
1 1 SCOP 101875 YceI-like
1 1 SCOP 101905 GyrA/ParC C-terminal domain-like
1 1 SCOP 102115 Biotin synthase
1 1 SCOP 102118 Oxygen-independent coproporphyrinogen III oxidase HemN
1 1 SCOP 102656 PdxA-like
1 1 SCOP 102660 PlsX-like
1 1 SCOP 102663 Phosphotransacetylase
1 1 SCOP 102755 Hsp90 middle domain
1 1 SCOP 102769 ATP-dependent protease Lon (La), catalytic domain
1 1 SCOP 102945 RelA/SpoT domain
1 1 SCOP 103021 tRNA pseudouridine synthase TruD
1 1 SCOP 103264 Chorismate synthase, AroC
1 1 SCOP 109840 Cag-Z
1 1 SCOP 110368 NeuB-like
1 1 SCOP 110388 MoCo biosynthesis proteins
1 1 SCOP 110627 Glucokinase
1 1 SCOP 110902 FabZ-like
1 1 SCOP 111155 Porphyromonas-type peptidylarginine deiminase
1 1 SCOP 111305 Recombination protein RecR
1 1 SCOP 111338 QueA-like
1 1 SCOP 117888 Ribosomal protein L16p
1 1 SCOP 140497 HP1531-like
1 1 SCOP 140932 Fic-like
1 1 SCOP 140991 FtsH protease domain-like
1 1 SCOP 141368 UbiD middle domain-like
1 1 SCOP 141840 Class-II DAHP synthetase
1 1 SCOP 141976 IlvD/EDD C-terminal domain-like
1 1 SCOP 142177 Histidinol phosphatase-like
1 1 SCOP 142434 CinA-like
1 1 SCOP 142696 RibA-like
1 1 SCOP 142755 NadA-like
1 1 SCOP 143549 Serine dehydratase beta chain-like
1 1 SCOP 143812 GatB/GatE catalytic domain-like
1 1 SCOP 143857 DeoB insert domain-like
1 1 SCOP 143897 HP0184-like
1 1 SCOP 143906 Gamma-glutamyltranspeptidase-like
1 1 SCOP 143976 lvD/EDD N-terminal domain-like
1 1 SCOP 143979 Type I restriction modification DNA specificity domain
1 1 SCOP 144028 Nqo4-like
1 1 SCOP 144031 Nq06-like
1 1 SCOP 158415 HP0062-like
1 1 SCOP 158600 MgsA/YrvN C-terminal domain-like
1 1 SCOP 158753 HP0242-like
1 1 SCOP 159112 RNB domain-like
1 1 SCOP 159720 mannose-1-phosphate guanylyl transferase
1 1 SCOP 159832 PBP transglycosylase domain-like
1 1 SCOP 159882 CDH-like
1 1 SCOP 160343 HP0495-like
1 1 SCOP 161099 MetI-like

Jump to [ Top of page · Assignment statistics ]


The following families have one or more weak hits:

SCOP family AF1531-like
SCOP family CorC/HlyC domain-like
SCOP family EscU C-terminal domain-like
SCOP family Smr domain
SCOP family Ribosomal protein L10-like
SCOP family NIL domain-like
SCOP family Iojap/YbeB-like
SCOP family FlaG-like
SCOP family HupF/HypC-like
SCOP family MgtE N-terminal domain-like
SCOP family HAMP domain
SCOP family DsbB-like
SCOP family Ribosomal protein L33p
SCOP family PhnA zinc-binding domain
SCOP family Magnesium transport protein CorA, transmembrane region
SCOP family UbiD C-terminal domain-like
SCOP family Glutathionylspermidine synthase ATP-binding domain-like
SCOP family CorA soluble domain-like
SCOP family Ribosomal protein L31p
SCOP family Ribosomal protein L28
SCOP family PPK middle domain-like
SCOP family SerA intervening domain-like
SCOP family TRCF domain
SCOP family Aspartokinase allosteric domain-like
SCOP family Nqo5-like
SCOP family Ribosomal protein L35p
SCOP family RelE-like
SCOP family NlpC/P60
SCOP family DeoB catalytic domain-like
SCOP family TrmB-like
SCOP family YhhF-like
SCOP family N-6 DNA Methylase-like
SCOP family CoaX-like
SCOP family YkgG-like
SCOP family PA1517-like
SCOP family LON domain-like
SCOP family BH3618-like
SCOP family CarD-like
SCOP family Ribosomal protein L19
SCOP family PhnA-like
SCOP family Ribosomal protein L21p
SCOP family Glu-tRNAGln amidotransferase C subunit
SCOP family TyrA dimerization domain-like
SCOP family GatB/GatE C-terminal domain-like
SCOP family AF0941-like
SCOP family PPK N-terminal domain-like
SCOP family FtsK C-terminal domain-like
SCOP family PaaD-like
SCOP family NifU C-terminal domain-like
SCOP family Band 7/SPFH domain
SCOP family Flagellar hook protein flgE
SCOP family CsrA-like
SCOP family ProC C-terminal domain-like
SCOP family XseB-like
SCOP family TrkA C-terminal domain-like
SCOP family HlyD-like secretion proteins
SCOP family Outer membrane protein transport protein
SCOP family NAD kinase-like
SCOP family Sporulation related repeat
SCOP family HSP90 C-terminal domain
SCOP family ParB-like nuclease domain
SCOP family Glycosyl transferases group 1
SCOP family Ppx/GppA phosphatase
SCOP family Methenyltetrahydrofolate synthetase
SCOP family Toprim domain
SCOP family Ribosomal L27 protein
SCOP family Serine acetyltransferase
SCOP family TF C-terminus
SCOP family KorB DNA-binding domain-like
SCOP family Heat-inducible transcription repressor HrcA, N-terminal domain
SCOP family Preprotein translocase SecY subunit
SCOP family Predicted metal-dependent hydrolase
SCOP family OmpA-like
SCOP family Nickel responsive regulator NikR, C-terminal domain
SCOP family NifU/IscU domain
SCOP family YigZ N-terminal domain-like
SCOP family Trigger factor ribosome-binding domain
SCOP family NIF3 (NGG1p interacting factor 3)-like
SCOP family CoaB-like
SCOP family Ribosomal protein L11 methyltransferase PrmA
SCOP family Bacterial fluorinating enzyme, N-terminal domain
SCOP family N-acetylmuramoyl-L-alanine amidase-like
SCOP family Putative Holliday junction resolvase RuvX
SCOP family Peptidoglycan hydrolase LytM
SCOP family Bacterial fluorinating enzyme, C-terminal domain
SCOP family Surface presentation of antigens (SPOA)
SCOP family Flagellar export chaperone FliS
SCOP family FUR-like
SCOP family CopG-like
SCOP family Heat shock protein 70kD (HSP70), C-terminal subdomain
SCOP family Ribosome-binding factor A, RbfA
SCOP family PaaI/YdiI-like
SCOP family Mago nashi protein
SCOP family Deoxycytidylate deaminase-like
SCOP family YggJ C-terminal domain-like
SCOP family YhcH-like
SCOP family Outer-membrane lipoproteins carrier protein LolA
SCOP family DNA methylase TaqI, N-terminal domain
SCOP family rRNA adenine dimethylase-like
SCOP family PFOR PP module
SCOP family PFOR Pyr module
SCOP family Alanine racemase
SCOP family Sigma4 domain
SCOP family Sigma3 domain
SCOP family Mechanosensitive channel protein MscS (YggB), transmembrane region
SCOP family GIY-YIG endonuclease
SCOP family Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
SCOP family Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
SCOP family Mechanosensitive channel protein MscS (YggB), C-terminal domain
SCOP family N-utilization substance G protein NusG, N-terminal domain
SCOP family Poly A polymerase head domain-like
SCOP family Adaptor protein ClpS (YljA)
SCOP family YbaB-like
SCOP family MraW-like putative methyltransferases
SCOP family YbeA-like
SCOP family PP-loop ATPase
SCOP family Shikimate dehydrogenase-like
SCOP family Proline dehydrohenase domain of bifunctional PutA protein
SCOP family ATP-dependent riboflavin kinase-like
SCOP family Mechanosensitive channel protein MscS (YggB), middle domain
SCOP family N-utilization substance G protein NusG, C-terminal domain
SCOP family Double Clp-N motif
SCOP family Poly A polymerase C-terminal region-like
SCOP family Porin chaperone SurA, peptide-binding domain
SCOP family Putative methyltransferase TM0872, insert domain
SCOP family Chromosomal replication initiation factor DnaA C-terminal domain IV
SCOP family Metal cation-transporting ATPase, ATP-binding domain N
SCOP family Meta-cation ATPase, catalytic domain P
SCOP family Calcium ATPase, transduction domain A
SCOP family a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
SCOP family F1F0 ATP synthase subunit B, membrane domain
SCOP family Cytochrome c oxidase subunit I-like
SCOP family F1F0 ATP synthase subunit A
SCOP family F1F0 ATP synthase subunit C
SCOP family Voltage-gated potassium channels
SCOP family Chemotaxis phosphatase CheZ
SCOP family Pseudouridine synthase RsuA/RluD
SCOP family YhbC-like, N-terminal domain
SCOP family YjeF C-terminal domain-like
SCOP family Glucose-inhibited division protein B (GidB)
SCOP family SpoU-like RNA 2'-O ribose methyltransferase
SCOP family Hydantoinase (dihydropyrimidinase), catalytic domain
SCOP family HtrA-like serine proteases
SCOP family Thymidylate synthase-complementing protein Thy1
SCOP family Glutamyl tRNA-reductase catalytic, N-terminal domain
SCOP family Urease metallochaperone UreE, C-terminal domain
SCOP family Transcription factor NusA, N-terminal domain
SCOP family Molybdenum cofactor biosynthesis protein MoeB
SCOP family Spermidine synthase
SCOP family Probable phosphatase YrbI
SCOP family Urease metallochaperone UreE, N-terminal domain
SCOP family RNase III catalytic domain-like
SCOP family 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
SCOP family Rho termination factor, N-terminal domain
SCOP family Holo-(acyl carrier protein) synthase ACPS
SCOP family Thiamin pyrophosphokinase, catalytic domain
SCOP family Potassium channel NAD-binding domain
SCOP family MoeA N-terminal region -like
SCOP family Cell-division inhibitor MinC, C-terminal domain
SCOP family Riboflavin synthase
SCOP family Prokaryotic PEBP-like proteins
SCOP family Chemotaxis protein CheA P1 domain
SCOP family TS-N domain
SCOP family MPP-like
SCOP family Methyl-accepting chemotaxis protein (MCP) signaling domain
SCOP family Coiled-coil domain of nucleotide exchange factor GrpE
SCOP family Tropomyosin
SCOP family DnaJ/Hsp40 cysteine-rich domain
SCOP family Metallothionein
SCOP family Ribosomal protein L36
SCOP family DNA primase zinc finger
SCOP family Ribosomal protein S14
SCOP family Outer membrane efflux proteins (OEP)
SCOP family Outer membrane phospholipase A (OMPLA)
SCOP family Inositol monophosphatase/fructose-1,6-bisphosphatase-like
SCOP family beta-Lactamase/D-ala carboxypeptidase
SCOP family Insert subdomain of RNA polymerase alpha subunit
SCOP family Penicillin binding protein dimerisation domain
SCOP family Lambda integrase-like, catalytic core
SCOP family 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain
SCOP family Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
SCOP family Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain
SCOP family FAD-linked oxidases, N-terminal domain
SCOP family Pyruvate phosphate dikinase, N-terminal domain
SCOP family ATP-binding domain of peptide synthetases
SCOP family Nuclease
SCOP family Nitrite and sulphite reductase 4Fe-4S domain-like
SCOP family DNA polymerase III, beta subunit
SCOP family Phosphoglucomutase, C-terminal domain
SCOP family YbaK/ProRS associated domain
SCOP family YrdC-like
SCOP family 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
SCOP family MutT-like
SCOP family N-acetyl transferase, NAT
SCOP family Biotin holoenzyme synthetase
SCOP family Ribonuclease PH domain 2-like
SCOP family Ribosomal protein L9 N-domain
SCOP family Ribosomal protein L9 C-domain
SCOP family 6-pyruvoyl tetrahydropterin synthase
SCOP family NADH oxidase/flavin reductase
SCOP family Dihydrodipicolinate reductase-like
SCOP family Homoserine dehydrogenase-like
SCOP family 4-oxalocrotonate tautomerase-like
SCOP family PurM N-terminal domain-like
SCOP family Tubulin, C-terminal domain
SCOP family GAD domain
SCOP family RNA polymerase alpha subunit dimerisation domain
SCOP family Cell division protein MinE topological specificity domain
SCOP family Translation initiation factor IF3, C-terminal domain
SCOP family Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
SCOP family Pseudouridine synthase I TruA
SCOP family 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
SCOP family Homoserine kinase
SCOP family Probable ACP-binding domain of malonyl-CoA ACP transacylase
SCOP family Bacterial exopeptidase dimerisation domain
SCOP family HMA, heavy metal-associated domain
SCOP family Ribosomal protein S6
SCOP family Anticodon-binding domain of PheRS
SCOP family Acylphosphatase-like
SCOP family Canonical RBD
SCOP family Short-chain ferredoxins
SCOP family Ribosomal protein L22
SCOP family Eukaryotic type KH-domain (KH-domain type I)
SCOP family Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
SCOP family Ribosomal S5 protein, N-terminal domain
SCOP family Double-stranded RNA-binding domain (dsRBD)
SCOP family RecA protein, C-terminal domain
SCOP family Ribosomal protein L7/12, C-terminal domain
SCOP family Elongation factor Ts (EF-Ts), dimerisation domain
SCOP family Molybdopterin synthase subunit MoaE
SCOP family NadC N-terminal domain-like
SCOP family 4HBT-like
SCOP family Ribosomal protein S16
SCOP family GreA transcript cleavage factor, C-terminal domain
SCOP family FKBP immunophilin/proline isomerase
SCOP family Diaminopimelate epimerase
SCOP family Glutamine synthetase, N-terminal domain
SCOP family Translation initiation factor IF3, N-terminal domain
SCOP family GHMP Kinase, N-terminal domain
SCOP family RNase P protein
SCOP family HIT (HINT, histidine triad) family of protein kinase-interacting proteins
SCOP family L23p
SCOP family LysM domain
SCOP family Bacterial muramidase, catalytic domain
SCOP family Phage lysozyme
SCOP family Tetrapyrrole methylase
SCOP family Peptidoglycan biosynthesis glycosyltransferase MurG
SCOP family Folylpolyglutamate synthetase
SCOP family MurCDEF
SCOP family Ribokinase-like
SCOP family glucose-1-phosphate thymidylyltransferase
SCOP family Type II DNA methylase
SCOP family Protein-L-isoaspartyl O-methyltransferase
SCOP family Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
SCOP family MurCDEF C-terminal domain
SCOP family Tetrahydrofolate dehydrogenase/cyclohydrolase
SCOP family Hydrogenase maturating endopeptidase HybD
SCOP family RuvC resolvase
SCOP family DnaQ-like 3'-5' exonuclease
SCOP family 5' to 3' exonuclease catalytic domain
SCOP family Maf-like
SCOP family Anticodon-binding domain of Class II aaRS
SCOP family Leucine aminopeptidase (Aminopeptidase A), N-terminal domain
SCOP family Transketolase C-terminal domain-like
SCOP family Thioltransferase
SCOP family Arginase-like amidino hydrolases
SCOP family Shikimate kinase (AroK)
SCOP family NagB-like
SCOP family D-Alanine ligase N-terminal domain
SCOP family Universal stress protein-like
SCOP family Cytidylyltransferase
SCOP family Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain
SCOP family L-alanine dehydrogenase-like
SCOP family Formate/glycerate dehydrogenases, substrate-binding domain
SCOP family CheY-related
SCOP family Initiation factor IF2/eIF5b, domain 3
SCOP family FabD-like
SCOP family Mug-like
SCOP family DNA ligase
SCOP family Ribosomal proteins L15p and L18e
SCOP family MurCD N-terminal domain
SCOP family FAD/NAD-linked reductases, N-terminal and central domains
SCOP family Pyruvate phosphate dikinase, C-terminal domain
SCOP family "Hypothetical" protein ybl036c
SCOP family Epsilon subunit of F1F0-ATP synthase N-terminal domain
SCOP family Type 1 signal peptidase
SCOP family AFP III-like domain
SCOP family Biotinyl/lipoyl-carrier proteins and domains
SCOP family Head domain of nucleotide exchange factor GrpE
SCOP family Cyclophilin (peptidylprolyl isomerase)
SCOP family Ribosomal protein L25-like
SCOP family Formate dehydrogenase/DMSO reductase, C-terminal domain
SCOP family N-terminal domain of alpha and beta subunits of F1 ATP synthase
SCOP family Post formyltransferase domain
SCOP family PNP-oxidase like
SCOP family DNA ligase/mRNA capping enzyme postcatalytic domain
SCOP family Myf domain
SCOP family Single strand DNA-binding domain, SSB
SCOP family DNA helicase RuvA subunit, N-terminal domain
SCOP family Anticodon-binding domain
SCOP family GroES
SCOP family eIF5a N-terminal domain-like
SCOP family Ribosomal proteins L24p and L21e
SCOP family Rieske iron-sulfur protein (ISP)
SCOP family HSP40/DnaJ peptide-binding domain
SCOP family Fibronectin type III
SCOP family Dimeric chorismate mutase
SCOP family Tetratricopeptide repeat (TPR)
SCOP family Ribosomal protein L7/12, oligomerisation (N-terminal) domain
SCOP family Glycerol-3-phosphate dehydrogenase
SCOP family C-terminal domain of glutamyl-tRNA synthetase (GluRS)
SCOP family Mismatch glycosylase
SCOP family Endonuclease III
SCOP family N-terminal domain of DnaB helicase
SCOP family Antitermination factor NusB
SCOP family 5' to 3' exonuclease, C-terminal subdomain
SCOP family C-terminal domain of RNA polymerase alpha subunit
SCOP family NAD+-dependent DNA ligase, domain 3
SCOP family DNA helicase RuvA subunit, middle domain
SCOP family Prokaryotic DNA-bending protein
SCOP family Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
SCOP family Signal peptide-binding domain
SCOP family Homodimeric domain of signal transducing histidine kinase
SCOP family Domain of the SRP/SRP receptor G-proteins
SCOP family Acyl-carrier protein (ACP)
SCOP family Ribosomal protein S20
SCOP family DNA-binding N-terminal domain of transcription activators
SCOP family Domains B1 and B5 of PheRS-beta, PheT
SCOP family DNA helicase RuvA subunit, C-terminal domain
SCOP family Ribosomal protein S18
SCOP family Ribosomal protein L11, C-terminal domain
SCOP family PhoB-like
SCOP family Helicase DNA-binding domain
SCOP family Methylated DNA-protein cysteine methyltransferase, C-terminal domain
SCOP family C-terminal UvrC-binding domain of UvrB
SCOP family Chaperone J-domain
SCOP family Ribosomal protein L29 (L29p)
SCOP family GreA transcript cleavage protein, N-terminal domain

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