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  Home > Genomes > Family assignments for Saccharomyces cerevisiae Y10


Saccharomyces cerevisiae Y10 family assignments

Taxonomy
Taxonomy browser entry

Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; Saccharomyces cerevisiae Y10

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Fasta format sequences
Domain assignments

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Assignment statistics

Sequences: 2656 total
1254 (47 %) with assignment
296 average length
41 % amino acid coverage
Domains: 1633 total
509 unique superfamilies
329 unique families
255 average length
3.2 average superfamily size
69 % formed by duplication
Domain combinations: 207 domain pairs
755 unique architectures

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Family assignments

Domains

Proteins

SCOP link

Families
21 21 SCOP 88854 Protein kinases, catalytic subunit
20 20 SCOP 52592 G proteins
12 10 SCOP 81268 Tandem AAA-ATPase domain
10 5 SCOP 53068 Actin/HSP70
10 10 SCOP 56251 Proteasome subunits
10 9 SCOP 81269 Extended AAA-ATPase domain
7 7 SCOP 47114 Nucleosome core histones
7 7 SCOP 54496 UBC-related
7 7 SCOP 55682 Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
7 7 SCOP 102609 Glycolipid 2-alpha-mannosyltransferase
6 6 SCOP 55730 N-acetyl transferase, NAT
5 3 SCOP 109692 Vacuolar sorting protein domain
4 4 SCOP 50045 SH3-domain
4 4 SCOP 51396 FMN-linked oxidoreductases
4 4 SCOP 51431 Aldo-keto reductases (NADP)
4 4 SCOP 51605 Enolase
4 4 SCOP 52325 DJ-1/PfpI
4 4 SCOP 52375 Class I aminoacyl-tRNA synthetases (RS), catalytic domain
4 4 SCOP 52541 Nucleotide and nucleoside kinases
4 4 SCOP 52686 ABC transporter ATPase domain-like
4 1 SCOP 52849 PDI-like
4 4 SCOP 53417 GABA-aminotransferase-like
4 4 SCOP 54827 Enolase N-terminal domain-like
4 4 SCOP 56310 Protein serine/threonine phosphatase
3 3 SCOP 48020 DNA polymerase III clamp loader subunits, C-terminal domain
3 3 SCOP 48453 Tetratricopeptide repeat (TPR)
3 3 SCOP 50136 Alcohol dehydrogenase-like, N-terminal domain
3 3 SCOP 50282 Cold shock DNA-binding domain-like
3 3 SCOP 50646 Pepsin-like
3 3 SCOP 51736 Alcohol dehydrogenase-like, C-terminal domain
3 3 SCOP 53272 Phosphoribosyltransferases (PRTases)
3 3 SCOP 53296 Phosphoribosylpyrophosphate synthetase-like
3 3 SCOP 53384 AAT-like
3 3 SCOP 53402 Cystathionine synthase-like
3 1 SCOP 53739 Phosphoglucomutase, first 3 domains
3 3 SCOP 54431 NTF2-like
3 3 SCOP 54535 FKBP immunophilin/proline isomerase
3 3 SCOP 100921 Heat shock protein 70kD (HSP70), peptide-binding domain
3 3 SCOP 103507 Mitochondrial carrier
3 3 SCOP 141755 PdxS-like
2 2 SCOP 46627 monodomain cytochrome c
2 1 SCOP 46753 DNA-binding domain of rap1
2 1 SCOP 46827 Linker histone H1/H5
2 2 SCOP 47096 HMG-box
2 2 SCOP 47502 Calmodulin-like
2 2 SCOP 47617 Glutathione S-transferase (GST), C-terminal domain
2 2 SCOP 49330 Cu,Zn superoxide dismutase-like
2 1 SCOP 49494 HSP40/DnaJ peptide-binding domain
2 1 SCOP 50263 Single strand DNA-binding domain, SSB
2 2 SCOP 50448 Elongation factors
2 2 SCOP 50461 Ribosomal protein L3
2 2 SCOP 50466 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
2 2 SCOP 50801 Pyruvate kinase beta-barrel domain
2 2 SCOP 50979 WD40-repeat
2 2 SCOP 51557 Adenosine/AMP deaminase
2 2 SCOP 51622 Pyruvate kinase
2 2 SCOP 51830 Formate/glycerate dehydrogenases, NAD-domain
2 2 SCOP 51943 FAD/NAD-linked reductases, N-terminal and central domains
2 2 SCOP 52314 Ribosomal protein S2
2 2 SCOP 52491 Tubulin, GTPase domain
2 2 SCOP 52670 RecA protein-like (ATPase-domain)
2 2 SCOP 52923 Transketolase C-terminal domain-like
2 2 SCOP 52936 Pyruvate kinase, C-terminal domain
2 1 SCOP 53083 Hexokinase
2 1 SCOP 53089 Glycerol kinase
2 2 SCOP 53255 Cofactor-dependent phosphoglycerate mutase
2 2 SCOP 53687 Tryptophan synthase beta subunit-like PLP-dependent enzymes
2 2 SCOP 53698 double-SIS domain
2 2 SCOP 53721 ALDH-like
2 2 SCOP 54229 Ribonuclease PH domain 1-like
2 2 SCOP 54696 BTB/POZ domain
2 2 SCOP 54748 Ribosomal L11/L12e N-terminal domain
2 2 SCOP 55299 YjgF/L-PSP
2 2 SCOP 55308 Tubulin, C-terminal domain
2 2 SCOP 55316 L30e/L7ae ribosomal proteins
2 2 SCOP 55921 Creatinase/aminopeptidase
2 1 SCOP 55946 TATA-box binding protein (TBP), C-terminal domain
2 1 SCOP 56015 Nitrite and sulphite reductase 4Fe-4S domain-like
2 2 SCOP 56236 Class II glutamine amidotransferases
2 2 SCOP 56323 ADC synthase
2 2 SCOP 56753 D-aminoacid aminotransferase-like PLP-dependent enzymes
2 2 SCOP 58039 SNARE fusion complex
2 1 SCOP 63412 MPP-like
2 1 SCOP 69815 Tyrosyl-DNA phosphodiesterase TDP1
2 2 SCOP 75305 Amidase signature (AS) enzymes
2 2 SCOP 75521 Clathrin coat assembly domain
2 2 SCOP 81605 PP2C-like
2 2 SCOP 88724 Pyruvate oxidase and decarboxylase Pyr module
2 2 SCOP 88735 TK-like Pyr module
2 2 SCOP 88749 Pyruvate oxidase and decarboxylase PP module
2 2 SCOP 88760 TK-like PP module
2 2 SCOP 89763 Ubiquitin activating enzymes (UBA)
2 1 SCOP 101588 Allantoicase repeat
2 2 SCOP 142721 PyrH-like
1 1 SCOP 46676 Cytochrome bc1 domain
1 1 SCOP 46925 RNA polymerase subunit RPB10
1 1 SCOP 46939 CRAL/TRIO N-terminal domain
1 1 SCOP 46943 Elongation factor TFIIS domain 2
1 1 SCOP 47253 Ribonucleotide reductase-like
1 1 SCOP 47371 Bromodomain
1 1 SCOP 47397 Transcription factor IIA (TFIIA), alpha-helical domain
1 1 SCOP 47460 HLH, helix-loop-helix DNA-binding domain
1 1 SCOP 47577 Calponin-homology domain, CH-domain
1 1 SCOP 47662 t-snare proteins
1 1 SCOP 47677 Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
1 1 SCOP 47808 5' to 3' exonuclease, C-terminal subdomain
1 1 SCOP 47918 C-terminal domain of alpha and beta subunits of F1 ATP synthase
1 1 SCOP 47974 Ribosomal protein S7
1 1 SCOP 48114 CCP-like
1 1 SCOP 48157 DNA repair glycosylase, 2 C-terminal domains
1 1 SCOP 48174 Cryptochrome/photolyase FAD-binding domain
1 1 SCOP 48180 Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
1 1 SCOP 48209 Glucoamylase
1 1 SCOP 48226 Class I alpha-1;2-mannosidase, catalytic domain
1 1 SCOP 48246 Protein prenyltransferases
1 1 SCOP 48257 Citrate synthase
1 1 SCOP 48372 Armadillo repeat
1 1 SCOP 48440 Protein prenylyltransferase
1 1 SCOP 48446 14-3-3 protein
1 1 SCOP 48577 Isoprenyl diphosphate synthases
1 1 SCOP 48604 Allosteric chorismate mutase
1 1 SCOP 49448 Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
1 1 SCOP 49778 Phosphatidylethanolamine binding protein
1 1 SCOP 50194 Ribosomal protein L14
1 1 SCOP 50277 Myf domain
1 1 SCOP 50321 RNA polymerase subunit RBP8
1 1 SCOP 50325 Inorganic pyrophosphatase
1 1 SCOP 50476 PNP-oxidase like
1 1 SCOP 50785 Transcription factor IIA (TFIIA), beta-barrel domain
1 1 SCOP 50892 Cyclophilin (peptidylprolyl isomerase)
1 1 SCOP 51191 Type I phosphomannose isomerase
1 1 SCOP 51231 Biotinyl/lipoyl-carrier proteins and domains
1 1 SCOP 51284 dUTPase-like
1 1 SCOP 51420 Alanine racemase-like, N-terminal domain
1 1 SCOP 51691 NadC C-terminal domain-like
1 1 SCOP 51727 Uroporphyrinogen decarboxylase, UROD
1 1 SCOP 51731 Methylenetetrahydrofolate reductase
1 1 SCOP 51800 Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
1 1 SCOP 51848 LDH N-terminal domain-like
1 1 SCOP 51868 6-phosphogluconate dehydrogenase-like, N-terminal domain
1 1 SCOP 51883 Aminoacid dehydrogenase-like, C-terminal domain
1 1 SCOP 52002 R1 subunit of ribonucleotide reductase, C-terminal domain
1 1 SCOP 52081 Ribosomal proteins L15p and L18e
1 1 SCOP 52088 CRAL/TRIO domain
1 1 SCOP 52122 Lumazine synthase
1 1 SCOP 52142 Uracil-DNA glycosylase
1 1 SCOP 52167 Ribosomal protein L4
1 1 SCOP 52284 Formate/glycerate dehydrogenases, substrate-binding domain
1 1 SCOP 52300 S-adenosylhomocystein hydrolase
1 1 SCOP 52432 ETFP subunits
1 1 SCOP 52475 Pyruvate oxidase and decarboxylase, middle domain
1 1 SCOP 52508 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
1 1 SCOP 52572 Adenosine-5'phosphosulfate kinase (APS kinase)
1 1 SCOP 52652 Nitrogenase iron protein-like
1 1 SCOP 52769 Arginase-like amidino hydrolases
1 1 SCOP 52773 Histone deacetylase, HDAC
1 1 SCOP 52778 CAT-like
1 1 SCOP 52789 Low-molecular-weight phosphotyrosine protein phosphatases
1 1 SCOP 52805 Higher-molecular-weight phosphotyrosine protein phosphatases
1 1 SCOP 52901 Glutathione peroxidase-like
1 1 SCOP 52926 Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
1 1 SCOP 53037 Eukaryotic RPB5 N-terminal domain
1 1 SCOP 53045 5' to 3' exonuclease catalytic domain
1 1 SCOP 53099 Ribonuclease H
1 1 SCOP 53168 Purine and uridine phosphorylases
1 1 SCOP 53204 Bacterial dinuclear zinc exopeptidases
1 1 SCOP 53235 Tetrahydrofolate dehydrogenase/cyclohydrolase
1 1 SCOP 53329 Formyltransferase
1 1 SCOP 53342 Fibrillarin homologue
1 1 SCOP 53351 Arginine methyltransferase
1 1 SCOP 53598 Dihydrofolate reductases
1 1 SCOP 53614 Ribokinase-like
1 1 SCOP 53660 Dimeric isocitrate & isopropylmalate dehydrogenases
1 1 SCOP 53672 Aspartate/ornithine carbamoyltransferase
1 1 SCOP 53749 Phosphoglycerate kinase
1 1 SCOP 53775 Glutaminase/Asparaginase
1 1 SCOP 53785 Phosphofructokinase
1 1 SCOP 53796 PEP carboxykinase C-terminal domain
1 1 SCOP 53851 Phosphate binding protein-like
1 1 SCOP 53928 Cytidine deaminase
1 1 SCOP 54044 Transglutaminase core
1 1 SCOP 54050 Ubiquitin carboxyl-terminal hydrolase UCH-L
1 1 SCOP 54066 DNA/RNA non-specific endonuclease
1 1 SCOP 54212 Translational machinery components
1 1 SCOP 54237 Ubiquitin-related
1 1 SCOP 54253 GABARAP-like
1 1 SCOP 54649 DLC
1 1 SCOP 54687 Ribosomal protein L10e
1 1 SCOP 54769 Double-stranded RNA-binding domain (dsRBD)
1 1 SCOP 54792 Eukaryotic type KH-domain (KH-domain type I)
1 1 SCOP 54815 Prokaryotic type KH domain (KH-domain type II)
1 1 SCOP 54920 Nucleoside diphosphate kinase, NDK
1 1 SCOP 55004 Poly(A) polymerase, PAP, C-terminal domain
1 1 SCOP 55009 HMA, heavy metal-associated domain
1 1 SCOP 55160 eIF1-like
1 1 SCOP 55187 Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
1 1 SCOP 55258 RNA polymerase alpha subunit dimerisation domain
1 1 SCOP 55283 Ribosomal protein L5
1 1 SCOP 55288 RPB5
1 1 SCOP 55376 Glucose 6-phosphate dehydrogenase-like
1 1 SCOP 55456 SRF-like
1 1 SCOP 55762 Cofilin-like
1 1 SCOP 55798 PR-1-like
1 1 SCOP 55817 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
1 1 SCOP 55857 Cytochrome b5
1 1 SCOP 55875 Heat shock protein 90, HSP90, N-terminal domain
1 1 SCOP 55910 Ribosome anti-association factor eIF6 (aIF6)
1 1 SCOP 55958 Phosphoglucomutase, C-terminal domain
1 1 SCOP 56048 Ribosomal protein S8
1 1 SCOP 56105 SAICAR synthase
1 1 SCOP 56108 Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta
1 1 SCOP 56288 Glyoxalase II (hydroxyacylglutathione hydrolase)
1 1 SCOP 56328 Lactate & malate dehydrogenases, C-terminal domain
1 1 SCOP 56554 Insert subdomain of RNA polymerase alpha subunit
1 1 SCOP 56635 Heme-dependent catalases
1 1 SCOP 56656 Inositol monophosphatase/fructose-1,6-bisphosphatase-like
1 1 SCOP 56691 T7 RNA polymerase
1 1 SCOP 56802 Acetyl-CoA synthetase-like
1 1 SCOP 56895 Aquaporin-like
1 1 SCOP 57851 RING finger domain, C3HC4
1 1 SCOP 57869 Metallothionein
1 1 SCOP 57939 DnaJ/Hsp40 cysteine-rich domain
1 1 SCOP 57960 Leucine zipper domain
1 1 SCOP 63614 Regulatory subunit H of the V-type ATPase
1 1 SCOP 63738 Leukotriene A4 hydrolase N-terminal domain
1 1 SCOP 63917 Dihydroorotase
1 1 SCOP 63971 Inosicase
1 1 SCOP 63976 Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
1 1 SCOP 63984 Sir2 family of transcriptional regulators
1 1 SCOP 64154 YjeF N-terminal domain-like
1 1 SCOP 64198 AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
1 1 SCOP 64269 PX domain
1 1 SCOP 64311 RBP11/RpoL
1 1 SCOP 64338 Leukotriene A4 hydrolase catalytic domain
1 1 SCOP 64372 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
1 1 SCOP 69001 FAD-dependent thiol oxidase
1 1 SCOP 69044 RNA polymerase II subunit RBP4 (RpoF)
1 1 SCOP 69557 Spermidine synthase
1 1 SCOP 69602 L-histidinol dehydrogenase HisD
1 1 SCOP 69646 Arp2/3 complex subunits
1 1 SCOP 74771 Clathrin adaptor core protein
1 1 SCOP 74904 Lectin leg-like
1 1 SCOP 75038 TauD/TfdA-like
1 1 SCOP 75110 Siroheme synthase N-terminal domain-like
1 1 SCOP 75273 Glycogenin
1 1 SCOP 75616 Siroheme synthase middle domains-like
1 1 SCOP 81288 RhoGDI-like
1 1 SCOP 81380 Skp1 dimerisation domain-like
1 1 SCOP 81495 Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
1 1 SCOP 81507 Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
1 1 SCOP 81513 Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
1 1 SCOP 81523 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
1 1 SCOP 81589 Poly(A) polymerase, PAP, N-terminal domain
1 1 SCOP 81630 Poly(A) polymerase, PAP, middle domain
1 1 SCOP 81699 FF domain
1 1 SCOP 81812 Helical domain of Sec23/24
1 1 SCOP 81843 Mannitol 2-dehydrogenase
1 1 SCOP 81996 beta-sandwich domain of Sec23/24
1 1 SCOP 82062 BAH domain
1 1 SCOP 82258 SAH/MTA deaminase-like
1 1 SCOP 82388 Predicted hydrolases Cof
1 1 SCOP 82458 Trunk domain of Sec23/24
1 1 SCOP 82568 Ubiquitin carboxyl-terminal hydrolase, UCH
1 1 SCOP 82755 C-terminal, gelsolin-like domain of Sec23/24
1 1 SCOP 82920 Zn-finger domain of Sec23/24
1 1 SCOP 88683 Eukaryotic ODC-like
1 1 SCOP 88704 Phosphoenolpyruvate mutase/Isocitrate lyase-like
1 1 SCOP 88741 Branched-chain alpha-keto acid dehydrogenase Pyr module
1 1 SCOP 88766 Branched-chain alpha-keto acid dehydrogenase PP module
1 1 SCOP 88771 PFOR PP module
1 1 SCOP 88784 rRNA adenine dimethylase-like
1 1 SCOP 88799 N-terminal, heterodimerisation domain of RBP7 (RpoE)
1 1 SCOP 89125 Nop domain
1 1 SCOP 89503 Ketopantoate hydroxymethyltransferase PanB
1 1 SCOP 89724 Macro domain
1 1 SCOP 89800 Deoxycytidylate deaminase-like
1 1 SCOP 89943 eEF1-gamma domain
1 1 SCOP 89958 MTH1187-like
1 1 SCOP 89976 Hypothetical protein Yml108w
1 1 SCOP 90100 Capz beta-1 subunit
1 1 SCOP 90210 Ran binding protein zinc finger-like
1 1 SCOP 101153 Mob1/phocein
1 1 SCOP 101354 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 SCOP 101407 Mo25 protein
1 1 SCOP 102115 Biotin synthase
1 1 SCOP 102463 Peptidyl-tRNA hydrolase II
1 1 SCOP 102646 CoaB-like
1 1 SCOP 102755 Hsp90 middle domain
1 1 SCOP 102766 Imidazole glycerol phosphate dehydratase
1 1 SCOP 102887 Coproporphyrinogen III oxidase
1 1 SCOP 102928 NifU/IscU domain
1 1 SCOP 103026 Aminomethyltransferase folate-binding domain
1 1 SCOP 103112 Activator of Hsp90 ATPase, Aha1
1 1 SCOP 109994 VPS9 domain
1 1 SCOP 110020 ERO1-like
1 1 SCOP 110112 Ctag/Cox11
1 1 SCOP 110289 Cell cycle arrest protein BUB3
1 1 SCOP 110384 Cobalamin-independent methionine synthase
1 1 SCOP 110509 NLI interacting factor-like phosphatase
1 1 SCOP 110513 IF2B-like
1 1 SCOP 110832 Nip7p homolog, N-terminal domain
1 1 SCOP 111219 ArgJ-like
1 1 SCOP 111233 YfcE-like
1 1 SCOP 116795 Rad21/Rec8-like
1 1 SCOP 116943 RNA-binding protein She2p
1 1 SCOP 117290 Nucleoporin domain
1 1 SCOP 117318 YML079-like
1 1 SCOP 118076 TRAPP components
1 1 SCOP 118204 Vacuolar ATP synthase subunit C
1 1 SCOP 140719 CSE2-like
1 1 SCOP 140722 MED7 hinge region
1 1 SCOP 140819 B56-like
1 1 SCOP 140991 FtsH protease domain-like
1 1 SCOP 141315 TIP49 domain
1 1 SCOP 141442 VPS36 N-terminal domain-like
1 1 SCOP 141618 3-hydroxyanthranilic acid dioxygenase-like
1 1 SCOP 141942 Thi4-like
1 1 SCOP 142186 Enolase-phosphatase E1
1 1 SCOP 142696 RibA-like
1 1 SCOP 143027 Spc25-like
1 1 SCOP 143927 beta-CASP RNA-metabolising hydrolases
1 1 SCOP 144001 Oxysterol-binding protein
1 1 SCOP 144218 CSL zinc finger
1 1 SCOP 158491 Arc1p N-terminal domain-like
1 1 SCOP 158782 HAT/Suf repeat
1 1 SCOP 159408 Zn-dependent arginine carboxypeptidase-like
1 1 SCOP 159513 EMG1/NEP1-like
1 1 SCOP 159858 Autophagin-like
1 1 SCOP 160684 YNR034W-A-like

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The following families have one or more weak hits:

SCOP family Zf-UBP
SCOP family ATP synthase D chain-like
SCOP family ATP synthase B chain-like
SCOP family ATP12-like
SCOP family Smr domain
SCOP family Ribosomal protein L10-like
SCOP family Rpp14/Pop5-like
SCOP family AMPKBI-like
SCOP family PSF2 N-terminal domain-like
SCOP family AtpF-like
SCOP family Ribosomal protein L14e
SCOP family AMPK-beta glycogen binding domain-like
SCOP family FCH domain
SCOP family PSF3 C-terminal domain-like
SCOP family PSF2 C-terminal domain-like
SCOP family RPO3F domain-like
SCOP family Rps19E-like
SCOP family NOB1 zinc finger-like
SCOP family Tim10/DDP
SCOP family Rhomboid-like
SCOP family FdhE-like
SCOP family Aspartokinase allosteric domain-like
SCOP family APG12-like
SCOP family RibD C-terminal domain-like
SCOP family TrmB-like
SCOP family CofD-like
SCOP family MtnX-like
SCOP family HisI-like
SCOP family MAL13P1.257-like
SCOP family LSM14 N-terminal domain-like
SCOP family Ribosomal protein L21p
SCOP family HspBP1 domain
SCOP family EB1 dimerisation domain-like
SCOP family EDF1-like
SCOP family SWIRM domain
SCOP family Rabenosyn-5 Rab-binding domain-like
SCOP family ISY1 N-terminal domain-like
SCOP family Tpt1/KptA
SCOP family Ribosomal protein S24e
SCOP family WrbA-like
SCOP family Kelch motif
SCOP family MIT domain
SCOP family RpoE2-like
SCOP family HkH motif-containing C2H2 finger
SCOP family YAP1 redox domain
SCOP family SSo0622-like
SCOP family AHSA1 domain
SCOP family HSP90 C-terminal domain
SCOP family Ppx/GppA phosphatase
SCOP family Methenyltetrahydrofolate synthetase
SCOP family YgfY-like
SCOP family Surp module (SWAP domain)
SCOP family DEK C-terminal domain
SCOP family DAK1
SCOP family BAR domain
SCOP family Preprotein translocase SecE subunit
SCOP family Steroid-binding domain
SCOP family Coatomer appendage domain
SCOP family Galactokinase
SCOP family Polo-box duplicated region
SCOP family YigZ N-terminal domain-like
SCOP family NIF3 (NGG1p interacting factor 3)-like
SCOP family NagD-like
SCOP family Aminomethyltransferase beta-barrel domain
SCOP family GS domain
SCOP family Coatomer appendage domain
SCOP family DhaL-like
SCOP family TENA/THI-4
SCOP family HD domain
SCOP family HAND domain of the nucleosome remodeling ATPase ISWI
SCOP family La domain
SCOP family SLIDE domain
SCOP family Heat shock protein 70kD (HSP70), C-terminal subdomain
SCOP family Lesion bypass DNA polymerase (Y-family), catalytic domain
SCOP family CCCH zinc finger
SCOP family Ribosomal protein S27e
SCOP family Hypothetical protein YjiA, C-terminal domain
SCOP family PhzC/PhzF-like
SCOP family PIN domain
SCOP family RraA-like
SCOP family NodB-like polysaccharide deacetylase
SCOP family Glycerophosphoryl diester phosphodiesterase
SCOP family HesB-like domain
SCOP family GatB/YqeY domain
SCOP family GAT domain
SCOP family CUE domain
SCOP family ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain
SCOP family PUA domain
SCOP family alpha-mannosidase, domain 2
SCOP family Sedlin (SEDL)
SCOP family R3H domain
SCOP family Poly A polymerase head domain-like
SCOP family BolA-like
SCOP family The homologous-pairing domain of Rad52 recombinase
SCOP family G domain-linked domain
SCOP family Choline/Carnitine O-acyltransferase
SCOP family Homocysteine S-methyltransferase
SCOP family TatD Mg-dependent DNase-like
SCOP family Tp47 lipoprotein, N-terminal domain
SCOP family C-terminal autoproteolytic domain of nucleoporin nup98
SCOP family ATP-dependent riboflavin kinase-like
SCOP family MIR domain
SCOP family Double Clp-N motif
SCOP family HCP-like
SCOP family Poly A polymerase C-terminal region-like
SCOP family Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
SCOP family Mitochondrial cytochrome c oxidase subunit VIa
SCOP family F-box domain
SCOP family Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD)
SCOP family Bacteriorhodopsin-like
SCOP family TGS domain
SCOP family Cullin homology domain
SCOP family Release factor
SCOP family Pseudouridine synthase RsuA/RluD
SCOP family D-ribose-5-phosphate isomerase (RpiA), lid domain
SCOP family Hypothetical protein MTH1 (MT0001), dimerisation domain
SCOP family D-ribose-5-phosphate isomerase (RpiA), catalytic domain
SCOP family Cap-Gly domain
SCOP family gamma-adaptin C-terminal appendage domain-like
SCOP family LCCL domain
SCOP family alpha-ketoacid dehydrogenase kinase, C-terminal domain
SCOP family SRP19
SCOP family Mitochondrial resolvase ydc2 catalytic domain
SCOP family PWWP domain
SCOP family Arp2/3 complex 16 kDa subunit ARPC5
SCOP family Ketopantoate reductase PanE
SCOP family RNase III catalytic domain-like
SCOP family alpha-ketoacid dehydrogenase kinase, N-terminal domain
SCOP family PEP carboxykinase N-terminal domain
SCOP family SAP domain
SCOP family Cytidylytransferase
SCOP family F1 ATPase inhibitor, IF1, C-terminal domain
SCOP family Carbamilase
SCOP family IPP isomerase-like
SCOP family Synatpobrevin N-terminal domain
SCOP family Fungal zinc peptidase
SCOP family Manganese-dependent inorganic pyrophosphatase (family II)
SCOP family SGL-like
SCOP family Leukotriene A4 hydrolase C-terminal domain
SCOP family BAG domain
SCOP family Ferredoxin reductase FAD-binding domain-like
SCOP family Coiled-coil domain of nucleotide exchange factor GrpE
SCOP family Tropomyosin
SCOP family PHD domain
SCOP family FYVE, a phosphatidylinositol-3-phosphate binding domain
SCOP family TFIIH p44 subunit cysteine-rich domain
SCOP family Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
SCOP family Pyk2-associated protein beta ARF-GAP domain
SCOP family Ribosomal protein L36
SCOP family Ribosomal protein L37e
SCOP family Ribosomal protein L37ae
SCOP family Transcriptional factor domain
SCOP family Microbial and mitochondrial ADK, insert "zinc finger" domain
SCOP family Retrovirus zinc finger-like domains
SCOP family Ribosomal protein L24e
SCOP family Erythroid transcription factor GATA-1
SCOP family Zn2/Cys6 DNA-binding domain
SCOP family Classic zinc finger, C2H2
SCOP family Colicin
SCOP family Ribosomal protein L1
SCOP family DNA topoisomerase IV, alpha subunit
SCOP family C-type lectin domain
SCOP family 4'-Phosphopantetheinyl transferase SFP
SCOP family FAD-linked oxidases, N-terminal domain
SCOP family Ribosomal protein L6
SCOP family The spindle assembly checkpoint protein mad2
SCOP family DNA repair glycosylase, N-terminal domain
SCOP family Ribonuclease Rh-like
SCOP family YrdC-like
SCOP family MutT-like
SCOP family Ribonuclease PH domain 2-like
SCOP family Ribosomal protein L9 N-domain
SCOP family NADH oxidase/flavin reductase
SCOP family GAPDH-like
SCOP family ERF1/Dom34 C-terminal domain-like
SCOP family GYF domain
SCOP family DNA repair protein MutS, domain I
SCOP family Translation initiation factor IF3, C-terminal domain
SCOP family Ribosome recycling factor, RRF
SCOP family Ribosomal protein S4
SCOP family Ribosomal protein L30p/L7e
SCOP family Duplicated SiR/NiR-like domains 1 and 3
SCOP family Pseudouridine synthase I TruA
SCOP family Bacterial exopeptidase dimerisation domain
SCOP family Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
SCOP family Ribosomal protein S10
SCOP family Ribosomal protein S6
SCOP family Anticodon-binding domain of PheRS
SCOP family EF-G/eEF-2 domains III and V
SCOP family Canonical RBD
SCOP family Subtilase propeptides/inhibitors
SCOP family Group II chaperonin (CCT, TRIC), intermediate domain
SCOP family Ribosomal protein L22
SCOP family Ribosomal protein S3 C-terminal domain
SCOP family Ribosomal S5 protein, N-terminal domain
SCOP family Signal recognition particle alu RNA binding heterodimer, SRP9/14
SCOP family Ribosomal protein L7/12, C-terminal domain
SCOP family Fe,Mn superoxide dismutase (SOD), C-terminal domain
SCOP family NadC N-terminal domain-like
SCOP family CBS-domain pair
SCOP family Chalcone isomerase
SCOP family Ribosomal protein S19
SCOP family Mitochondrial glycoprotein MAM33-like
SCOP family Transcriptional coactivator PC4 C-terminal domain
SCOP family GHMP Kinase, N-terminal domain
SCOP family DNA gyrase/MutL, second domain
SCOP family HIT (HINT, histidine triad) family of protein kinase-interacting proteins
SCOP family Ribonuclease A-like
SCOP family Chalcone synthase-like
SCOP family Lysophospholipase
SCOP family Folylpolyglutamate synthetase
SCOP family Bacterial lipase
SCOP family Fungal lipases
SCOP family Folylpolyglutamate synthetase, C-terminal domain
SCOP family DNA repair protein MutS, domain II
SCOP family Ribosomal protein L18 and S11
SCOP family Creatinase/prolidase N-terminal domain
SCOP family tRNA-intron endonuclease catalytic domain-like
SCOP family Anticodon-binding domain of Class II aaRS
SCOP family Pyruvate-ferredoxin oxidoreductase, PFOR, domain II
SCOP family Glutathione S-transferase (GST), N-terminal domain
SCOP family Thioltransferase
SCOP family Multidomain sulfurtransferase (rhodanese)
SCOP family Cell cycle control phosphatase, catalytic domain
SCOP family Dual specificity phosphatase-like
SCOP family NagB-like
SCOP family Cryptochrome/photolyase, N-terminal domain
SCOP family PAPS reductase-like
SCOP family Reductases
SCOP family Class I glutamine amidotransferases (GAT)
SCOP family Cytochrome p450 reductase N-terminal domain-like
SCOP family FabD-like
SCOP family Internalin LRR domain
SCOP family Ribosomal protein L32e
SCOP family Group II chaperonin (CCT, TRIC), apical domain
SCOP family GroEL-like chaperone, apical domain
SCOP family N-terminal domain of adrenodoxin reductase-like
SCOP family Tyrosine-dependent oxidoreductases
SCOP family Inosine monophosphate dehydrogenase (IMPDH)
SCOP family Tryptophan biosynthesis enzymes
SCOP family RabGEF Mss4
SCOP family Type 1 signal peptidase
SCOP family Head domain of nucleotide exchange factor GrpE
SCOP family WW domain
SCOP family Rap30/74 interaction domains
SCOP family Mannose 6-phosphate receptor domain
SCOP family Enabled/VASP homology 1 domain (EVH1 domain)
SCOP family Pleckstrin-homology domain (PH domain)
SCOP family Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain
SCOP family ValRS/IleRS/LeuRS editing domain
SCOP family Staphylococcal nuclease
SCOP family Sm motif of small nuclear ribonucleoproteins, SNRNP
SCOP family GroES
SCOP family Ribosomal proteins L24p and L21e
SCOP family Glycosyl hydrolases family 16
SCOP family FHA domain
SCOP family Co-chaperone p23-like
SCOP family HSP20
SCOP family Multidomain cupredoxins
SCOP family MSP-like
SCOP family Proteinase A inhibitor IA3
SCOP family Ribosomal protein L39e
SCOP family Eukaryotic type heme oxygenase
SCOP family Group II chaperonin (CCT, TRIC), ATPase domain
SCOP family Cytochrome c oxidase subunit E
SCOP family VHS domain
SCOP family Ankyrin repeat
SCOP family Ras GEF
SCOP family BCR-homology GTPase activation domain (BH-domain)
SCOP family DNA repair protein MutS, domain III
SCOP family Ribosomal protein L7/12, oligomerisation (N-terminal) domain
SCOP family Cytochrome P450
SCOP family Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI)
SCOP family R1 subunit of ribonucleotide reductase, N-terminal domain
SCOP family Regulator of G-protein signaling, RGS
SCOP family Cyclin
SCOP family N-terminal domain of the delta subunit of the F1F0-ATP synthase
SCOP family Ypt/Rab-GAP domain of gyp1p
SCOP family Transducin (alpha subunit), insertion domain
SCOP family DNA repair protein Rad51, N-terminal domain
SCOP family SAM (sterile alpha motif) domain
SCOP family Cytochrome c oxidase subunit h
SCOP family SWIB/MDM2 domain
SCOP family Eps15 homology domain (EH domain)
SCOP family Mitochondrial import receptor subunit Tom20
SCOP family TBP-associated factors, TAFs
SCOP family p8-MTCP1
SCOP family Ribosomal protein S15
SCOP family Acyl-CoA binding protein
SCOP family DNA repair factor XPA DNA- and RPA-binding domain, C-terminal subdomain
SCOP family Double-stranded DNA-binding domain
SCOP family Ribosomal protein S13
SCOP family Ribosomal protein S18
SCOP family Ribosomal protein L11, C-terminal domain
SCOP family Methionine aminopeptidase, insert domain
SCOP family Heat-shock transcription factor
SCOP family DNA-binding domain from rap30
SCOP family Forkhead DNA-binding domain
SCOP family Methylated DNA-protein cysteine methyltransferase, C-terminal domain
SCOP family Myb/SANT domain
SCOP family Homeodomain
SCOP family Fe,Mn superoxide dismutase (SOD), N-terminal domain
SCOP family Prefoldin
SCOP family Chaperone J-domain

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.