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  Home > Genomes > Superfamily assignments for Aureococcus anophagefferens


Aureococcus anophagefferens superfamily assignments

Taxonomy
Taxonomy browser entry

Eukaryota; Stramenopiles; Pelagophyceae; Pelagomonadales; Aureococcus; Aureococcus anophagefferens

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Fasta format sequences
Domain assignments

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Assignment statistics

Sequences: 11501 total
8124 (71 %) with assignment
522 average length
40 % amino acid coverage
Domains: 11868 total
842 unique superfamilies
579 unique families
297 average length
14.1 average superfamily size
93 % formed by duplication
Domain combinations: 956 domain pairs
2727 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies
1028 860 181 11 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
381 380 57 2 SCOP 56112 Protein kinase-like (PK-like)
291 254 89 1 SCOP 47473 EF-hand
270 261 77 9 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
256 179 87 1 SCOP 48452 TPR-like
222 219 59 8 SCOP 51735 NAD(P)-binding Rossmann-fold domains
214 193 69 1 SCOP 48403 Ankyrin repeat
208 132 31 0 SCOP 81901 HCP-like
196 193 56 6 SCOP 53474 alpha/beta-Hydrolases
192 172 49 1 SCOP 50978 WD40 repeat-like
190 156 47 10 SCOP 48371 ARM repeat
166 162 65 2 SCOP 51197 Clavaminate synthase-like
164 115 49 1 SCOP 51206 cAMP-binding domain-like
152 116 16 2 SCOP 53901 Thiolase-like
149 131 71 0 SCOP 57850 RING/U-box
138 127 34 2 SCOP 52833 Thioredoxin-like
130 106 38 0 SCOP 81324 Voltage-gated potassium channels
120 107 39 4 SCOP 51905 FAD/NAD(P)-binding domain
119 116 32 0 SCOP 103473 MFS general substrate transporter
108 54 36 0 SCOP 69318 Integrin alpha N-terminal domain
106 105 37 1 SCOP 46565 Chaperone J-domain
101 98 21 8 SCOP 54001 Cysteine proteinases
97 96 33 4 SCOP 53448 Nucleotide-diphospho-sugar transferases
94 77 29 1 SCOP 54928 RNA-binding domain, RBD
86 52 34 0 SCOP 57184 Growth factor receptor domain
83 67 37 4 SCOP 50249 Nucleic acid-binding proteins
78 56 34 2 SCOP 49899 Concanavalin A-like lectins/glucanases
77 77 24 7 SCOP 56784 HAD-like
75 74 14 5 SCOP 53383 PLP-dependent transferases
75 69 21 0 SCOP 52058 L domain-like
74 67 30 0 SCOP 52047 RNI-like
70 39 18 3 SCOP 53067 Actin-like ATPase domain
70 54 18 0 SCOP 46689 Homeodomain-like
68 57 44 1 SCOP 50729 PH domain-like
65 64 4 0 SCOP 103511 Chlorophyll a-b binding protein
65 37 30 0 SCOP 49562 C2 domain (Calcium/lipid-binding domain, CaLB)
64 64 12 1 SCOP 53649 Alkaline phosphatase-like
63 58 13 1 SCOP 54534 FKBP-like
63 58 41 0 SCOP 144232 HIT/MYND zinc finger-like
62 62 10 1 SCOP 103506 Mitochondrial carrier
62 20 19 2 SCOP 81296 E set domains
60 59 27 6 SCOP 51445 (Trans)glycosidases
59 55 23 1 SCOP 46785 "Winged helix" DNA-binding domain
59 49 24 2 SCOP 54236 Ubiquitin-like
59 43 34 0 SCOP 51045 WW domain
58 57 11 1 SCOP 51430 NAD(P)-linked oxidoreductase
55 55 3 2 SCOP 47113 Histone-fold
54 54 17 3 SCOP 56300 Metallo-dependent phosphatases
51 44 17 4 SCOP 52096 ClpP/crotonase
51 41 28 0 SCOP 50156 PDZ domain-like
50 48 26 3 SCOP 56059 Glutathione synthetase ATP-binding domain-like
50 48 15 1 SCOP 56801 Acetyl-CoA synthetase-like
50 25 5 0 SCOP 82185 Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
49 41 14 0 SCOP 103481 Multidrug resistance efflux transporter EmrE
49 44 27 0 SCOP 57903 FYVE/PHD zinc finger
48 48 9 2 SCOP 50891 Cyclophilin-like
47 47 17 1 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
47 35 13 0 SCOP 90123 ABC transporter transmembrane region
46 38 21 1 SCOP 51126 Pectin lyase-like
44 43 20 1 SCOP 82199 SET domain
42 42 10 2 SCOP 53254 Phosphoglycerate mutase-like
42 42 17 0 SCOP 47616 GST C-terminal domain-like
42 38 19 0 SCOP 48056 Di-copper centre-containing domain
41 41 19 0 SCOP 52266 SGNH hydrolase
38 36 21 0 SCOP 50998 Quinoprotein alcohol dehydrogenase-like
37 13 11 0 SCOP 49265 Fibronectin type III
36 36 11 1 SCOP 81606 PP2C-like
36 35 18 2 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
35 34 24 3 SCOP 52374 Nucleotidylyl transferase
35 34 21 6 SCOP 54211 Ribosomal protein S5 domain 2-like
34 33 23 3 SCOP 53098 Ribonuclease H-like
34 34 8 4 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
34 30 11 0 SCOP 50985 RCC1/BLIP-II
34 32 12 2 SCOP 52799 (Phosphotyrosine protein) phosphatases II
29 26 17 0 SCOP 49764 HSP20-like chaperones
28 28 10 0 SCOP 55856 Cytochrome b5-like heme/steroid binding domain
27 26 8 1 SCOP 50129 GroES-like
27 27 6 3 SCOP 53187 Zn-dependent exopeptidases
27 27 6 1 SCOP 54495 UBC-like
26 25 17 2 SCOP 55681 Class II aaRS and biotin synthetases
26 25 15 2 SCOP 50447 Translation proteins
26 22 9 3 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
25 21 18 0 SCOP 47336 ACP-like
25 25 11 1 SCOP 56219 DNase I-like
25 13 8 1 SCOP 63411 LuxS/MPP-like metallohydrolase
25 16 6 0 SCOP 55785 PYP-like sensor domain (PAS domain)
25 22 15 0 SCOP 117281 Kelch motif
25 25 11 1 SCOP 81665 Calcium ATPase, transmembrane domain M
25 25 11 4 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
25 16 12 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
24 24 9 8 SCOP 51556 Metallo-dependent hydrolases
24 24 12 4 SCOP 51569 Aldolase
24 24 5 2 SCOP 55120 Pseudouridine synthase
24 24 5 2 SCOP 53720 ALDH-like
24 24 16 1 SCOP 53300 vWA-like
24 24 10 1 SCOP 81653 Calcium ATPase, transduction domain A
23 22 5 2 SCOP 102114 Radical SAM enzymes
23 23 7 2 SCOP 64356 SNARE-like
23 23 9 5 SCOP 51182 RmlC-like cupins
23 22 15 2 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
23 16 13 0 SCOP 55021 ACT-like
23 21 17 0 SCOP 54171 DNA-binding domain
23 12 10 0 SCOP 63748 Tudor/PWWP/MBT
22 22 6 1 SCOP 51395 FMN-linked oxidoreductases
22 17 10 1 SCOP 47954 Cyclin-like
21 20 12 2 SCOP 52743 Subtilisin-like
21 21 10 2 SCOP 54373 FAD-linked reductases, C-terminal domain
20 20 9 0 SCOP 58038 SNARE fusion complex
20 20 4 1 SCOP 50182 Sm-like ribonucleoproteins
20 19 13 0 SCOP 55961 Bet v1-like
20 20 15 1 SCOP 88697 PUA domain-like
20 17 12 0 SCOP 50965 Galactose oxidase, central domain
20 17 12 0 SCOP 47370 Bromodomain
20 20 2 1 SCOP 56204 Hect, E3 ligase catalytic domain
19 19 8 3 SCOP 109604 HD-domain/PDEase-like
19 19 16 1 SCOP 49785 Galactose-binding domain-like
19 19 10 1 SCOP 52343 Ferredoxin reductase-like, C-terminal NADP-linked domain
19 11 8 0 SCOP 82866 Multidrug efflux transporter AcrB transmembrane domain
19 11 9 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
18 18 11 0 SCOP 55811 Nudix
18 16 12 0 SCOP 47095 HMG-box
18 17 9 1 SCOP 54427 NTF2-like
18 16 11 1 SCOP 54631 CBS-domain pair
18 18 12 2 SCOP 81301 Nucleotidyltransferase
18 18 11 0 SCOP 52087 CRAL/TRIO domain
17 17 10 1 SCOP 53850 Periplasmic binding protein-like II
17 17 5 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
17 16 11 0 SCOP 50044 SH3-domain
17 17 11 1 SCOP 52151 FabD/lysophospholipase-like
17 17 6 1 SCOP 52490 Tubulin nucleotide-binding domain-like
17 17 5 0 SCOP 81660 Metal cation-transporting ATPase, ATP-binding domain N
17 16 10 1 SCOP 63380 Riboflavin synthase domain-like
16 16 10 2 SCOP 52402 Adenine nucleotide alpha hydrolases-like
16 16 12 2 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
16 14 6 2 SCOP 69572 Activating enzymes of the ubiquitin-like proteins
16 16 9 0 SCOP 64268 PX domain
16 15 7 0 SCOP 48592 GroEL equatorial domain-like
16 11 9 1 SCOP 56436 C-type lectin-like
16 16 6 1 SCOP 55307 Tubulin C-terminal domain-like
15 14 4 1 SCOP 51161 Trimeric LpxA-like enzymes
15 14 9 3 SCOP 56281 Metallo-hydrolase/oxidoreductase
15 15 7 0 SCOP 144091 Rhomboid-like
15 15 10 1 SCOP 50022 ISP domain
15 11 9 0 SCOP 49503 Cupredoxins
15 15 5 1 SCOP 56645 Acyl-CoA dehydrogenase NM domain-like
15 15 11 0 SCOP 75005 Arabinanase/levansucrase/invertase
15 13 12 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
15 6 4 1 SCOP 55973 S-adenosylmethionine synthetase
15 13 12 1 SCOP 52440 PreATP-grasp domain
15 15 7 0 SCOP 54849 GroEL-intermediate domain like
14 14 9 2 SCOP 52317 Class I glutamine amidotransferase-like
14 11 5 2 SCOP 53271 PRTase-like
14 14 7 2 SCOP 48208 Six-hairpin glycosidases
14 14 5 1 SCOP 47576 Calponin-homology domain, CH-domain
14 14 10 1 SCOP 54695 POZ domain
14 14 13 1 SCOP 51230 Single hybrid motif
14 14 10 0 SCOP 49879 SMAD/FHA domain
14 8 7 1 SCOP 52777 CoA-dependent acyltransferases
14 14 4 1 SCOP 47203 Acyl-CoA dehydrogenase C-terminal domain-like
14 14 11 0 SCOP 81383 F-box domain
14 14 6 2 SCOP 52029 GroEL apical domain-like
14 14 4 0 SCOP 57863 ArfGap/RecO-like zinc finger
14 14 12 0 SCOP 63712 Nicotinic receptor ligand binding domain-like
14 14 13 0 SCOP 101447 Formin homology 2 domain (FH2 domain)
14 14 12 0 SCOP 48097 Regulator of G-protein signaling, RGS
13 13 5 3 SCOP 53613 Ribokinase-like
13 10 5 4 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
13 13 5 1 SCOP 75217 alpha/beta knot
13 13 1 1 SCOP 51316 Mss4-like
13 13 5 4 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
13 6 6 0 SCOP 55008 HMA, heavy metal-associated domain
13 13 9 1 SCOP 52954 Class II aaRS ABD-related
13 12 7 1 SCOP 50494 Trypsin-like serine proteases
13 7 4 1 SCOP 54980 EF-G C-terminal domain-like
13 6 6 0 SCOP 56487 SRCR-like
12 12 5 3 SCOP 51366 Ribulose-phoshate binding barrel
12 12 6 1 SCOP 50104 Translation proteins SH3-like domain
12 10 6 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
12 12 9 1 SCOP 55920 Creatinase/aminopeptidase
12 11 7 0 SCOP 52821 Rhodanese/Cell cycle control phosphatase
12 12 6 3 SCOP 56672 DNA/RNA polymerases
12 11 6 1 SCOP 52283 Formate/glycerate dehydrogenase catalytic domain-like
12 11 4 1 SCOP 54593 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
12 10 5 1 SCOP 51338 Composite domain of metallo-dependent hydrolases
12 6 2 0 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
12 12 11 0 SCOP 90112 Neurotransmitter-gated ion-channel transmembrane pore
12 7 4 1 SCOP 47923 Ypt/Rab-GAP domain of gyp1p
11 11 3 1 SCOP 55068 Peptide methionine sulfoxide reductase
11 11 3 1 SCOP 56655 Carbohydrate phosphatase
11 10 9 0 SCOP 63829 Calcium-dependent phosphotriesterase
11 11 5 2 SCOP 55315 L30e-like
11 8 7 0 SCOP 56024 Phospholipase D/nuclease
11 10 6 1 SCOP 55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
11 11 7 0 SCOP 56176 FAD-binding/transporter-associated domain-like
11 7 6 0 SCOP 90209 Ran binding protein zinc finger-like
10 10 4 2 SCOP 52218 Flavoproteins
10 10 3 2 SCOP 100950 NagB/RpiA/CoA transferase-like
10 10 4 1 SCOP 54292 2Fe-2S ferredoxin-like
10 7 3 1 SCOP 54637 Thioesterase/thiol ester dehydrase-isomerase
10 10 2 2 SCOP 48576 Terpenoid synthases
10 6 4 1 SCOP 55753 Actin depolymerizing proteins
10 10 3 1 SCOP 56317 Carbon-nitrogen hydrolase
10 10 6 3 SCOP 55931 Glutamine synthetase/guanido kinase
10 6 5 0 SCOP 55073 Nucleotide cyclase
10 10 4 1 SCOP 48264 Cytochrome P450
10 9 5 0 SCOP 54909 Dimeric alpha+beta barrel
10 8 8 0 SCOP 50370 Ricin B-like lectins
10 10 5 3 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
10 4 4 0 SCOP 51120 beta-Roll
10 10 7 0 SCOP 68906 SAP domain
10 10 2 0 SCOP 90002 Hypothetical protein YjiA, C-terminal domain
10 9 9 0 SCOP 46934 UBA-like
10 8 7 0 SCOP 47769 SAM/Pointed domain
10 8 8 0 SCOP 57756 Retrovirus zinc finger-like domains
9 8 4 1 SCOP 54197 HIT-like
9 9 4 1 SCOP 69593 Glycerol-3-phosphate (1)-acyltransferase
9 9 8 3 SCOP 53633 Carbamate kinase-like
9 9 2 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
9 9 4 1 SCOP 52768 Arginase/deacetylase
9 8 6 0 SCOP 52172 CheY-like
9 9 3 1 SCOP 111352 Ammonium transporter
9 8 6 0 SCOP 57783 Zinc beta-ribbon
9 8 8 0 SCOP 53822 Periplasmic binding protein-like I
9 9 5 0 SCOP 50969 YVTN repeat-like/Quinoprotein amine dehydrogenase
9 9 7 0 SCOP 50814 Lipocalins
9 9 7 0 SCOP 82171 DPP6 N-terminal domain-like
9 9 8 1 SCOP 51246 Rudiment single hybrid motif
9 9 2 1 SCOP 117892 Band 7/SPFH domain
9 3 2 1 SCOP 53738 Phosphoglucomutase, first 3 domains
9 8 8 0 SCOP 90229 CCCH zinc finger
9 8 8 0 SCOP 49599 TRAF domain-like
9 8 6 0 SCOP 47762 PAH2 domain
8 7 4 1 SCOP 53927 Cytidine deaminase-like
8 8 5 1 SCOP 50324 Inorganic pyrophosphatase
8 8 1 1 SCOP 54648 DLC
8 3 2 1 SCOP 49329 Cu,Zn superoxide dismutase-like
8 6 4 1 SCOP 54919 Nucleoside diphosphate kinase, NDK
8 8 5 0 SCOP 55781 GAF domain-like
8 8 6 0 SCOP 56399 ADP-ribosylation
8 8 3 1 SCOP 51998 PFL-like glycyl radical enzymes
8 8 8 0 SCOP 75011 3-carboxy-cis,cis-mucoante lactonizing enzyme
8 8 3 2 SCOP 51604 Enolase C-terminal domain-like
8 8 4 0 SCOP 51011 Glycosyl hydrolase domain
8 8 5 1 SCOP 140990 FtsH protease domain-like
8 8 3 1 SCOP 54826 Enolase N-terminal domain-like
8 8 4 1 SCOP 48225 Seven-hairpin glycosidases
8 8 6 0 SCOP 55545 beta-N-acetylhexosaminidase-like domain
8 8 4 0 SCOP 74924 Cap-Gly domain
8 8 6 1 SCOP 81271 TGS-like
7 7 3 0 SCOP 57829 Zn-binding ribosomal proteins
7 7 5 0 SCOP 55174 Alpha-L RNA-binding motif
7 6 3 2 SCOP 48150 DNA-glycosylase
7 7 5 2 SCOP 51419 PLP-binding barrel
7 6 5 1 SCOP 56104 SAICAR synthase-like
7 7 4 1 SCOP 88723 PIN domain-like
7 7 3 1 SCOP 50630 Acid proteases
7 7 2 1 SCOP 111126 Ligand-binding domain in the NO signalling and Golgi transport
7 7 4 0 SCOP 56601 beta-lactamase/transpeptidase-like
7 7 4 1 SCOP 56349 DNA breaking-rejoining enzymes
7 7 4 3 SCOP 52467 DHS-like NAD/FAD-binding domain
7 7 2 0 SCOP 54736 ClpS-like
7 7 3 0 SCOP 50800 PK beta-barrel domain-like
7 7 5 1 SCOP 103025 Folate-binding domain
7 7 6 0 SCOP 50939 Sialidases
7 6 5 0 SCOP 57667 beta-beta-alpha zinc fingers
7 7 2 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
7 7 4 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
7 7 5 1 SCOP 81631 PAP/OAS1 substrate-binding domain
7 7 3 0 SCOP 48168 R1 subunit of ribonucleotide reductase, N-terminal domain
6 6 2 1 SCOP 52141 Uracil-DNA glycosylase-like
6 6 3 0 SCOP 111331 NAD kinase/diacylglycerol kinase-like
6 6 4 1 SCOP 51695 PLC-like phosphodiesterases
6 6 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
6 6 1 2 SCOP 48557 L-aspartase-like
6 6 4 0 SCOP 54862 4Fe-4S ferredoxins
6 6 2 2 SCOP 46626 Cytochrome c
6 6 3 0 SCOP 52499 Isochorismatase-like hydrolases
6 5 5 3 SCOP 54506 Diaminopimelate epimerase-like
6 6 3 2 SCOP 74650 Galactose mutarotase-like
6 6 3 0 SCOP 57997 Tropomyosin
6 6 2 2 SCOP 52972 ITPase-like
6 5 3 1 SCOP 48113 Heme-dependent peroxidases
6 6 2 1 SCOP 88946 Sigma2 domain of RNA polymerase sigma factors
6 6 5 0 SCOP 81340 Clc chloride channel
6 6 3 1 SCOP 48173 Cryptochrome/photolyase FAD-binding domain
6 5 4 0 SCOP 103088 OmpA-like
6 6 6 0 SCOP 69322 Tricorn protease domain 2
6 6 6 0 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
6 6 2 0 SCOP 63825 YWTD domain
6 4 4 1 SCOP 56014 Nitrite and sulphite reductase 4Fe-4S domain-like
6 6 2 0 SCOP 52935 PK C-terminal domain-like
6 6 5 2 SCOP 51971 Nucleotide-binding domain
6 6 4 0 SCOP 52075 Outer arm dynein light chain 1
6 6 3 0 SCOP 55060 GHMP Kinase, C-terminal domain
6 5 5 0 SCOP 52113 BRCT domain
6 6 5 0 SCOP 54160 Chromo domain-like
6 4 4 1 SCOP 158702 Sec63 N-terminal domain-like
6 6 5 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
6 6 3 0 SCOP 100934 Heat shock protein 70kD (HSP70), C-terminal subdomain
6 6 5 1 SCOP 49348 Clathrin adaptor appendage domain
6 6 5 0 SCOP 47676 Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
6 5 4 0 SCOP 49303 beta-Galactosidase/glucuronidase domain
6 4 4 0 SCOP 117839 WWE domain
6 5 5 0 SCOP 57440 Kringle-like
6 6 2 1 SCOP 49447 Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
6 6 3 1 SCOP 75632 Cullin homology domain
6 6 4 0 SCOP 50911 Mannose 6-phosphate receptor domain
5 5 3 1 SCOP 53790 Tetrapyrrole methylase
5 5 4 2 SCOP 53697 SIS domain
5 5 3 2 SCOP 53137 Translational machinery components
5 5 4 1 SCOP 51730 FAD-linked oxidoreductase
5 5 3 1 SCOP 56796 Dehydroquinate synthase-like
5 2 2 0 SCOP 56988 Anthrax protective antigen
5 5 2 1 SCOP 50475 FMN-binding split barrel
5 5 2 2 SCOP 48613 Heme oxygenase-like
5 5 4 1 SCOP 53328 Formyltransferase
5 5 2 0 SCOP 46579 Prefoldin
5 4 2 2 SCOP 48239 Terpenoid cyclases/Protein prenyltransferases
5 5 4 0 SCOP 51306 LexA/Signal peptidase
5 4 4 0 SCOP 53639 AraD/HMP-PK domain-like
5 3 2 1 SCOP 69645 Arp2/3 complex subunits
5 5 4 1 SCOP 56529 FAH
5 5 3 0 SCOP 161084 MAPEG domain-like
5 5 3 0 SCOP 52091 SpoIIaa-like
5 5 5 1 SCOP 52016 LeuD/IlvD-like
5 5 4 0 SCOP 161111 Cation efflux protein transmembrane domain-like
5 5 5 1 SCOP 55186 ThrRS/AlaRS common domain
5 5 3 0 SCOP 53092 Creatinase/prolidase N-terminal domain
5 5 4 0 SCOP 101898 NHL repeat
5 5 3 1 SCOP 47661 t-snare proteins
5 5 2 2 SCOP 52922 TK C-terminal domain-like
5 5 2 0 SCOP 52279 Beta-D-glucan exohydrolase, C-terminal domain
5 3 3 0 SCOP 55124 Nitrite/Sulfite reductase N-terminal domain-like
5 5 4 1 SCOP 81837 BEACH domain
5 5 1 1 SCOP 55031 Bacterial exopeptidase dimerisation domain
5 5 2 1 SCOP 74788 Cullin repeat-like
5 5 5 0 SCOP 109993 VPS9 domain
5 5 3 0 SCOP 110942 HSP90 C-terminal domain
4 4 2 1 SCOP 81338 Aquaporin-like
4 4 2 1 SCOP 75304 Amidase signature (AS) enzymes
4 4 3 1 SCOP 52080 Ribosomal proteins L15p and L18e
4 4 3 1 SCOP 53784 Phosphofructokinase
4 4 2 0 SCOP 160369 Ribosomal protein L10-like
4 2 1 0 SCOP 81333 F1F0 ATP synthase subunit C
4 4 2 0 SCOP 47060 S15/NS1 RNA-binding domain
4 4 4 0 SCOP 101908 Putative isomerase YbhE
4 4 2 0 SCOP 55298 YjgF-like
4 4 3 0 SCOP 54060 His-Me finger endonucleases
4 4 4 0 SCOP 52949 Macro domain-like
4 4 4 1 SCOP 48256 Citrate synthase
4 4 3 0 SCOP 110296 Oligoxyloglucan reducing end-specific cellobiohydrolase
4 4 2 1 SCOP 102886 Coproporphyrinogen III oxidase
4 4 3 0 SCOP 54897 Protease propeptides/inhibitors
4 4 3 2 SCOP 88713 Glycoside hydrolase/deacetylase
4 4 2 0 SCOP 55257 RBP11-like subunits of RNA polymerase
4 4 4 0 SCOP 102712 JAB1/MPN domain
4 4 2 0 SCOP 47413 lambda repressor-like DNA-binding domains
4 4 3 1 SCOP 117916 Fe-S cluster assembly (FSCA) domain-like
4 4 4 1 SCOP 56524 Oxidoreductase molybdopterin-binding domain
4 4 3 0 SCOP 159501 EreA/ChaN-like
4 4 3 0 SCOP 50993 Peptidase/esterase 'gauge' domain
4 4 4 0 SCOP 143456 VC0467-like
4 4 3 0 SCOP 51004 C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
4 4 1 1 SCOP 51219 TRAP-like
4 4 4 1 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
4 2 2 0 SCOP 50199 Staphylococcal nuclease
4 4 4 0 SCOP 46589 tRNA-binding arm
4 4 4 1 SCOP 51690 Nicotinate/Quinolinate PRTase C-terminal domain-like
4 4 3 0 SCOP 48019 post-AAA+ oligomerization domain-like
4 4 4 1 SCOP 55816 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
4 3 3 1 SCOP 56042 PurM C-terminal domain-like
4 3 3 1 SCOP 55326 PurM N-terminal domain-like
4 2 2 1 SCOP 56053 Ribosomal protein L6
4 4 2 1 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
4 4 3 0 SCOP 55048 Probable ACP-binding domain of malonyl-CoA ACP transacylase
4 3 3 0 SCOP 141072 CalX-like
4 4 1 1 SCOP 69000 FAD-dependent thiol oxidase
4 3 3 0 SCOP 55394 Bactericidal permeability-increasing protein, BPI
4 4 2 0 SCOP 47895 Transducin (alpha subunit), insertion domain
4 4 3 0 SCOP 48464 ENTH/VHS domain
4 4 2 0 SCOP 57959 Leucine zipper domain
4 4 4 0 SCOP 57933 TAZ domain
4 3 3 0 SCOP 47005 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
4 4 2 0 SCOP 101790 Aminomethyltransferase beta-barrel domain
3 3 2 1 SCOP 56420 Peptide deformylase
3 3 2 1 SCOP 52166 Ribosomal protein L4
3 3 1 1 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
3 3 3 0 SCOP 46946 S13-like H2TH domain
3 3 3 1 SCOP 64182 DHH phosphoesterases
3 2 2 0 SCOP 56214 4'-phosphopantetheinyl transferase
3 3 2 0 SCOP 53597 Dihydrofolate reductase-like
3 3 2 1 SCOP 47240 Ferritin-like
3 3 1 1 SCOP 75620 Release factor
3 3 3 2 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
3 3 3 1 SCOP 52980 Restriction endonuclease-like
3 3 3 2 SCOP 55821 YrdC/RibB
3 3 1 0 SCOP 89360 HesB-like domain
3 3 3 1 SCOP 50715 Ribosomal protein L25-like
3 3 2 1 SCOP 51412 Inosine monophosphate dehydrogenase (IMPDH)
3 3 1 1 SCOP 50685 Barwin-like endoglucanases
3 3 3 0 SCOP 55469 FMN-dependent nitroreductase-like
3 3 3 0 SCOP 81321 Family A G protein-coupled receptor-like
3 3 1 1 SCOP 51726 UROD/MetE-like
3 3 1 0 SCOP 56815 Sec1/munc18-like (SM) proteins
3 3 3 0 SCOP 48317 Acid phosphatase/Vanadium-dependent haloperoxidase
3 2 2 0 SCOP 53590 Nucleoside hydrolase
3 3 2 1 SCOP 56752 D-aminoacid aminotransferase-like PLP-dependent enzymes
3 3 2 2 SCOP 90096 Subunits of heterodimeric actin filament capping protein Capz
3 3 2 1 SCOP 56019 The spindle assembly checkpoint protein mad2
3 2 2 1 SCOP 140959 Indolic compounds 2,3-dioxygenase-like
3 3 1 1 SCOP 55418 eIF4e-like
3 3 2 1 SCOP 53800 Chelatase
3 3 3 0 SCOP 101478 ADP-ribosylglycohydrolase
3 3 2 1 SCOP 118196 YaeB-like
3 3 2 0 SCOP 53807 "Helical backbone" metal receptor
3 3 3 1 SCOP 50692 ADC-like
3 3 3 0 SCOP 110857 Gamma-glutamyl cyclotransferase-like
3 3 2 1 SCOP 54518 Tubby C-terminal domain-like
3 3 3 0 SCOP 82153 FAS1 domain
3 3 2 0 SCOP 110916 Peptidyl-tRNA hydrolase domain-like
3 3 2 0 SCOP 110069 ApaG-like
3 3 3 1 SCOP 52335 Methylglyoxal synthase-like
3 3 3 0 SCOP 47781 RuvA domain 2-like
3 3 3 0 SCOP 100939 SPOC domain-like
3 2 2 0 SCOP 47592 SWIB/MDM2 domain
3 3 2 1 SCOP 89124 Nop domain
3 3 2 0 SCOP 54984 eEF-1beta-like
3 3 1 1 SCOP 102462 Peptidyl-tRNA hydrolase II
3 3 3 0 SCOP 52200 Toll/Interleukin receptor TIR domain
3 3 2 0 SCOP 55103 FAD-linked oxidases, C-terminal domain
3 3 3 0 SCOP 81923 Double Clp-N motif
3 3 1 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
3 3 2 0 SCOP 160443 SMR domain-like
3 3 3 0 SCOP 159941 MM3350-like
3 3 2 0 SCOP 47384 Homodimeric domain of signal transducing histidine kinase
3 3 2 1 SCOP 56719 Type II DNA topoisomerase
3 3 1 0 SCOP 55234 Cyanase C-terminal domain
3 3 2 0 SCOP 118116 DNA mismatch repair protein MutL
3 3 3 1 SCOP 52210 Succinyl-CoA synthetase domains
3 3 1 0 SCOP 116726 TrkA C-terminal domain-like
3 3 3 0 SCOP 48334 DNA repair protein MutS, domain III
3 3 3 0 SCOP 50621 Alanine racemase C-terminal domain-like
3 3 2 0 SCOP 81585 PsbU/PolX domain-like
3 3 3 0 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
3 3 1 0 SCOP 48300 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
3 3 3 1 SCOP 63737 Leukotriene A4 hydrolase N-terminal domain
3 2 2 0 SCOP 160240 Cation efflux protein cytoplasmic domain-like
3 3 1 0 SCOP 110921 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
3 2 2 1 SCOP 55945 TATA-box binding protein-like
3 3 3 0 SCOP 54768 dsRNA-binding domain-like
3 3 3 0 SCOP 48065 DBL homology domain (DH-domain)
3 3 2 1 SCOP 55957 Phosphoglucomutase, C-terminal domain
3 3 2 1 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
3 3 3 0 SCOP 82708 R3H domain
3 3 1 1 SCOP 47874 Annexin
3 3 3 0 SCOP 47391 Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit
3 3 3 1 SCOP 48425 Sec7 domain
3 3 1 0 SCOP 54368 Glutamine synthetase, N-terminal domain
3 3 3 0 SCOP 143791 DUSP-like
3 3 1 1 SCOP 54747 Ribosomal L11/L12e N-terminal domain
3 3 3 0 SCOP 75553 Smc hinge domain
3 3 2 1 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
3 3 3 1 SCOP 47212 FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)
3 3 2 0 SCOP 89000 post-HMGL domain-like
3 3 3 0 SCOP 55711 Subdomain of clathrin and coatomer appendage domain
3 3 2 1 SCOP 63887 P-domain of calnexin/calreticulin
3 3 3 0 SCOP 101224 HAND domain of the nucleosome remodeling ATPase ISWI
2 2 2 0 SCOP 53167 Purine and uridine phosphorylases
2 2 1 1 SCOP 55282 RL5-like
2 2 2 1 SCOP 64263 Prokaryotic ribosomal protein L17
2 2 1 1 SCOP 51658 Xylose isomerase-like
2 2 2 1 SCOP 53748 Phosphoglycerate kinase
2 2 1 1 SCOP 75625 YebC-like
2 2 1 1 SCOP 82649 SufE/NifU
2 2 2 1 SCOP 52943 ATP synthase (F1-ATPase), gamma subunit
2 2 2 1 SCOP 52161 Ribosomal protein L13
2 2 1 1 SCOP 52313 Ribosomal protein S2
2 2 1 1 SCOP 64005 Undecaprenyl diphosphate synthase
2 2 2 1 SCOP 142695 RibA-like
2 2 2 1 SCOP 55205 EPT/RTPC-like
2 2 1 0 SCOP 82657 BolA-like
2 2 2 0 SCOP 46561 Ribosomal protein L29 (L29p)
2 2 1 0 SCOP 55387 Frataxin/Nqo15-like
2 2 2 0 SCOP 144122 Tim10-like
2 2 2 1 SCOP 56322 ADC synthase
2 2 1 1 SCOP 57798 Casein kinase II beta subunit
2 2 2 0 SCOP 111278 SSo0622-like
2 2 2 0 SCOP 47027 Acyl-CoA binding protein
2 2 2 0 SCOP 63393 RNA polymerase subunits
2 2 2 1 SCOP 55248 PCD-like
2 2 1 1 SCOP 53774 Glutaminase/Asparaginase
2 2 2 0 SCOP 47819 HRDC-like
2 2 1 1 SCOP 48439 Protein prenylyltransferase
2 2 1 1 SCOP 55159 eIF1-like
2 2 2 2 SCOP 55620 Tetrahydrobiopterin biosynthesis enzymes-like
2 2 1 0 SCOP 46458 Globin-like
2 2 1 1 SCOP 101546 ASF1-like
2 2 2 0 SCOP 102405 MCP/YpsA-like
2 2 2 1 SCOP 51717 Dihydropteroate synthetase-like
2 2 2 0 SCOP 141571 Pentapeptide repeat-like
2 1 1 0 SCOP 46955 Putative DNA-binding domain
2 2 2 1 SCOP 89733 L-sulfolactate dehydrogenase-like
2 2 2 1 SCOP 53732 Aconitase iron-sulfur domain
2 2 1 1 SCOP 103365 Hypothetical protein PH1602
2 2 1 1 SCOP 54111 Urease, gamma-subunit
2 2 1 1 SCOP 51278 Urease, beta-subunit
2 2 2 0 SCOP 50952 Soluble quinoprotein glucose dehydrogenase
2 2 1 0 SCOP 158997 Trm112p-like
2 2 1 0 SCOP 52425 Cryptochrome/photolyase, N-terminal domain
2 2 1 0 SCOP 109910 YgfY-like
2 2 2 0 SCOP 55826 YbaK/ProRS associated domain
2 1 1 0 SCOP 89796 CoA-transferase family III (CaiB/BaiF)
2 2 1 0 SCOP 101386 all-alpha NTP pyrophosphatases
2 2 2 1 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
2 1 1 1 SCOP 161070 SNF-like
2 2 1 1 SCOP 103196 Roadblock/LC7 domain
2 2 2 0 SCOP 110395 CutC-like
2 2 2 1 SCOP 56726 DNA topoisomerase IV, alpha subunit
2 2 1 0 SCOP 46950 Double-stranded DNA-binding domain
2 2 2 1 SCOP 46548 alpha-helical ferredoxin
2 2 2 0 SCOP 69695 SRP19
2 2 2 1 SCOP 56003 Molybdenum cofactor-binding domain
2 2 2 0 SCOP 158832 Tex N-terminal region-like
2 2 1 1 SCOP 69336 Alpha subunit of glutamate synthase, C-terminal domain
2 1 1 1 SCOP 55979 DNA clamp
2 2 2 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
2 2 2 0 SCOP 50960 TolB, C-terminal domain
2 2 2 0 SCOP 82114 Riboflavin kinase-like
2 2 2 1 SCOP 142877 EndoU-like
2 2 2 0 SCOP 49468 VHL
2 2 2 0 SCOP 52009 Phosphohistidine domain
2 2 2 0 SCOP 81995 beta-sandwich domain of Sec23/24
2 2 2 0 SCOP 90257 Myosin rod fragments
2 2 2 0 SCOP 55658 L9 N-domain-like
2 2 2 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
2 2 2 1 SCOP 53671 Aspartate/ornithine carbamoyltransferase
2 2 2 0 SCOP 51294 Hedgehog/intein (Hint) domain
2 2 1 1 SCOP 54719 Fe,Mn superoxide dismutase (SOD), C-terminal domain
2 2 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
2 2 1 1 SCOP 110019 ERO1-like
2 2 2 1 SCOP 52021 Carbamoyl phosphate synthetase, small subunit N-terminal domain
2 2 2 0 SCOP 54665 CO dehydrogenase molybdoprotein N-domain-like
2 2 2 1 SCOP 140869 GUN4-like
2 2 2 0 SCOP 55447 CO dehydrogenase flavoprotein C-terminal domain-like
2 2 2 0 SCOP 49354 PapD-like
2 2 2 0 SCOP 144083 Magnesium transport protein CorA, transmembrane region
2 2 2 0 SCOP 49299 PKD domain
2 2 2 0 SCOP 75689 Zinc-binding domain of translation initiation factor 2 beta
2 2 2 0 SCOP 100966 Translation initiation factor 2 beta, aIF2beta, N-terminal domain
2 2 2 0 SCOP 47741 CO dehydrogenase ISP C-domain like
2 2 2 0 SCOP 46938 CRAL/TRIO N-terminal domain
2 1 1 0 SCOP 55116 Formiminotransferase domain of formiminotransferase-cyclodeaminase.
2 2 2 0 SCOP 47933 ERP29 C domain-like
2 2 2 0 SCOP 81624 N-terminal domain of MutM-like DNA repair proteins
2 2 2 1 SCOP 143975 IlvD/EDD N-terminal domain-like
2 2 2 0 SCOP 54675 Nicotinate/Quinolinate PRTase N-terminal domain-like
2 2 2 1 SCOP 47446 Signal peptide-binding domain
2 2 2 1 SCOP 56542 Substrate-binding domain of HMG-CoA reductase
2 2 1 0 SCOP 116742 eIF2alpha middle domain-like
2 2 2 0 SCOP 48108 Carbamoyl phosphate synthetase, large subunit connection domain
2 2 2 0 SCOP 48350 GTPase activation domain, GAP
2 2 1 0 SCOP 101152 Mob1/phocein
2 2 1 1 SCOP 48445 14-3-3 protein
2 2 2 0 SCOP 118359 Expressed protein At2g23090/F21P24.15
2 2 2 1 SCOP 63570 PABC (PABP) domain
2 2 2 0 SCOP 57889 Cysteine-rich domain
2 2 2 0 SCOP 101690 PAZ domain
2 2 1 0 SCOP 116846 MIT domain
2 2 2 0 SCOP 110004 Glycolipid transfer protein, GLTP
2 2 1 1 SCOP 55481 N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
2 2 2 0 SCOP 143724 PHP14-like
2 2 2 1 SCOP 82754 C-terminal, gelsolin-like domain of Sec23/24
2 2 2 0 SCOP 52025 PA domain
2 2 1 0 SCOP 88798 N-terminal, heterodimerisation domain of RBP7 (RpoE)
2 2 1 0 SCOP 144074 E2F-DP heterodimerization region
2 2 2 1 SCOP 54713 Elongation factor Ts (EF-Ts), dimerisation domain
2 2 1 1 SCOP 46609 Fe,Mn superoxide dismutase (SOD), N-terminal domain
2 2 2 0 SCOP 69742 Glutamyl tRNA-reductase catalytic, N-terminal domain
2 2 1 1 SCOP 110993 eIF-2-alpha, C-terminal domain
2 2 1 1 SCOP 89942 eEF1-gamma domain
2 1 1 0 SCOP 55666 Ribonuclease PH domain 2-like
2 2 2 0 SCOP 102848 NSFL1 (p97 ATPase) cofactor p47, SEP domain
2 1 1 0 SCOP 54416 Amine oxidase N-terminal region
2 2 2 0 SCOP 81886 Helical scaffold and wing domains of SecA
2 2 2 0 SCOP 81822 RuBisCo LSMT C-terminal, substrate-binding domain
2 2 2 0 SCOP 143503 PUG domain-like
2 2 2 1 SCOP 159042 Plus3-like
2 2 1 1 SCOP 56741 Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
2 2 2 0 SCOP 55277 GYF domain
2 2 2 0 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
2 2 1 0 SCOP 55003 PAP/Archaeal CCA-adding enzyme, C-terminal domain
2 2 1 0 SCOP 64586 C-terminal domain of ProRS
2 2 1 0 SCOP 75445 D-ribose-5-phosphate isomerase (RpiA), lid domain
2 2 2 1 SCOP 81811 Helical domain of Sec23/24
2 2 2 1 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
2 2 2 1 SCOP 74778 Aconitase B, N-terminal domain
2 2 1 0 SCOP 101821 Aminopeptidase/glucanase lid domain
2 2 2 0 SCOP 82919 Zn-finger domain of Sec23/24
2 2 2 1 SCOP 81767 Pre-protein crosslinking domain of SecA
2 2 1 0 SCOP 81799 Putative methyltransferase TM0872, insert domain
1 1 1 1 SCOP 74982 Small protein B (SmpB)
1 1 1 0 SCOP 56808 Ribosomal protein L1
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 0 SCOP 46911 Ribosomal protein S18
1 1 1 0 SCOP 82607 YbaB-like
1 1 1 0 SCOP 89919 Ribosome-binding factor A, RbfA
1 1 1 0 SCOP 54999 Ribosomal protein S10
1 1 1 0 SCOP 54570 Ribosomal protein S19
1 1 1 0 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 1 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 0 SCOP 57840 Ribosomal protein L36
1 1 1 1 SCOP 74731 Ribosomal protein L20
1 1 1 0 SCOP 103657 BAR/IMD domain-like
1 1 1 1 SCOP 55831 Thymidylate synthase/dCMP hydroxymethylase
1 1 1 0 SCOP 110324 Ribosomal L27 protein-like
1 1 1 0 SCOP 143800 L28p-like
1 1 1 0 SCOP 82549 DAK1/DegV-like
1 1 1 0 SCOP 46992 Ribosomal protein S20
1 1 1 1 SCOP 55194 Ribosome recycling factor, RRF
1 1 1 0 SCOP 54565 Ribosomal protein S16
1 1 1 1 SCOP 69765 IpsF-like
1 1 1 0 SCOP 51261 Duplicated hybrid motif
1 1 1 1 SCOP 103263 Chorismate synthase, AroC
1 1 1 1 SCOP 51283 dUTPase-like
1 1 1 1 SCOP 111337 QueA-like
1 1 1 1 SCOP 51713 tRNA-guanine transglycosylase
1 1 1 1 SCOP 56770 HydA/Nqo6-like
1 1 1 1 SCOP 56276 S-adenosylmethionine decarboxylase
1 1 1 0 SCOP 52121 Lumazine synthase
1 1 1 0 SCOP 55129 Ribosomal protein L30p/L7e
1 1 1 1 SCOP 48140 Ribosomal protein L19 (L19e)
1 1 1 0 SCOP 144217 CSL zinc finger
1 1 1 0 SCOP 52042 Ribosomal protein L32e
1 1 1 0 SCOP 54575 Ribosomal protein L31e
1 1 1 0 SCOP 54762 Signal recognition particle alu RNA binding heterodimer, SRP9/14
1 1 1 0 SCOP 142897 TFB5-like
1 1 1 0 SCOP 103456 Preprotein translocase SecE subunit
1 1 1 0 SCOP 81524 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
1 1 1 0 SCOP 159468 AtpF-like
1 1 1 0 SCOP 144210 Nop10-like SnoRNP
1 1 1 0 SCOP 89895 FYSH domain
1 1 1 0 SCOP 69103 Arp2/3 complex 16 kDa subunit ARPC5
1 1 1 0 SCOP 48662 Ribosomal protein L39e
1 1 1 1 SCOP 118203 Vacuolar ATP synthase subunit C
1 1 1 1 SCOP 82282 Homocysteine S-methyltransferase
1 1 1 0 SCOP 47694 Cytochrome c oxidase subunit h
1 1 1 1 SCOP 69060 Arp2/3 complex 21 kDa subunit ARPC3
1 1 1 0 SCOP 103486 V-type ATP synthase subunit C
1 1 1 0 SCOP 53032 tRNA-intron endonuclease catalytic domain-like
1 1 1 1 SCOP 64153 YjeF N-terminal domain-like
1 1 1 1 SCOP 143113 NAP-like
1 1 1 0 SCOP 103111 Activator of Hsp90 ATPase, Aha1
1 1 1 1 SCOP 46924 RNA polymerase subunit RPB10
1 1 1 0 SCOP 69618 HemD-like
1 1 1 1 SCOP 55909 Pentein
1 1 1 0 SCOP 52788 Phosphotyrosine protein phosphatases I
1 1 1 1 SCOP 63562 RPB6/omega subunit-like
1 1 1 0 SCOP 101960 Stabilizer of iron transporter SufD
1 1 1 0 SCOP 141734 HisI-like
1 1 1 1 SCOP 57662 Ferredoxin thioredoxin reductase (FTR), catalytic beta chain
1 1 1 0 SCOP 81648 a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
1 1 1 0 SCOP 50090 Electron transport accessory proteins
1 1 1 1 SCOP 81536 Subunit III of photosystem I reaction centre, PsaF
1 1 1 0 SCOP 51069 Carbonic anhydrase
1 1 1 1 SCOP 55040 Molybdenum cofactor biosynthesis protein C, MoaC
1 1 1 0 SCOP 69118 AhpD-like
1 1 1 1 SCOP 53795 PEP carboxykinase-like
1 1 1 0 SCOP 55724 Mog1p/PsbP-like
1 1 1 1 SCOP 52255 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
1 1 1 0 SCOP 55331 Tautomerase/MIF
1 1 1 0 SCOP 49482 Aromatic compound dioxygenase
1 1 1 1 SCOP 56209 Nitrile hydratase alpha chain
1 1 1 0 SCOP 82697 PurS-like
1 1 1 0 SCOP 55083 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
1 1 1 0 SCOP 46767 Methylated DNA-protein cysteine methyltransferase, C-terminal domain
1 1 1 0 SCOP 101744 Rof/RNase P subunit-like
1 1 1 0 SCOP 55797 PR-1-like
1 1 1 0 SCOP 158682 TerB-like
1 1 1 0 SCOP 55154 CYTH-like phosphatases
1 1 1 1 SCOP 52507 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
1 1 1 0 SCOP 54690 Molybdopterin synthase subunit MoaE
1 1 1 0 SCOP 54913 GlnB-like
1 1 1 0 SCOP 143410 DOPA-like
1 1 1 1 SCOP 110399 ThiG-like
1 1 1 0 SCOP 101112 Oxygen-evolving enhancer protein 3,
1 1 1 0 SCOP 53218 Molybdenum cofactor biosynthesis proteins
1 1 1 0 SCOP 117856 AF0104/ALDC/Ptd012-like
1 1 1 1 SCOP 52733 Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
1 1 1 0 SCOP 69065 RNase III domain-like
1 1 1 0 SCOP 143081 BB1717-like
1 1 1 0 SCOP 159245 AttH-like
1 1 1 0 SCOP 89028 Cobalamin adenosyltransferase-like
1 1 1 0 SCOP 89095 GatB/YqeY motif
1 1 1 1 SCOP 48600 Chorismate mutase II
1 1 1 0 SCOP 49472 Transthyretin (synonym: prealbumin)
1 1 1 1 SCOP 158694 UraD-Like
1 1 1 0 SCOP 102588 LmbE-like
1 1 1 0 SCOP 56747 Prim-pol domain
1 1 1 1 SCOP 110581 Indigoidine synthase A-like
1 1 1 0 SCOP 57802 Rubredoxin-like
1 1 1 0 SCOP 117457 FumA C-terminal domain-like
1 1 1 0 SCOP 53182 Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
1 1 1 1 SCOP 52242 Cobalamin (vitamin B12)-binding domain
1 1 1 1 SCOP 51703 Cobalamin (vitamin B12)-dependent enzymes
1 1 1 0 SCOP 101473 DhaL-like
1 1 1 1 SCOP 111326 Urocanase
1 1 1 0 SCOP 50486 FMT C-terminal domain-like
1 1 1 0 SCOP 141130 Acetamidase/Formamidase-like
1 1 1 0 SCOP 64076 MTH938-like
1 1 1 1 SCOP 56925 OMPA-like
1 1 1 0 SCOP 142764 YgbK-like
1 1 1 0 SCOP 69754 Ribosome binding protein Y (YfiA homologue)
1 1 1 0 SCOP 50974 Nitrous oxide reductase, N-terminal domain
1 1 1 0 SCOP 49452 Starch-binding domain-like
1 1 1 0 SCOP 55136 Probable bacterial effector-binding domain
1 1 1 0 SCOP 89562 RraA-like
1 1 1 1 SCOP 160920 PSTPO5379-like
1 1 1 1 SCOP 102546 RbsD-like
1 1 1 0 SCOP 74784 Translin
1 1 1 0 SCOP 50346 PRC-barrel domain
1 1 1 0 SCOP 111321 AF1104-like
1 1 1 0 SCOP 69819 MTH1598-like
1 1 1 1 SCOP 55287 RPB5-like RNA polymerase subunit
1 1 1 0 SCOP 102891 Hypothetical protein Ta1206
1 1 1 0 SCOP 143437 THUMP domain-like
1 1 1 0 SCOP 116820 Rps17e-like
1 1 1 0 SCOP 160374 RplX-like
1 1 1 0 SCOP 63867 MoeA C-terminal domain-like
1 1 1 0 SCOP 55895 Ribonuclease Rh-like
1 1 1 1 SCOP 69864 Argininosuccinate synthetase, C-terminal domain
1 1 1 0 SCOP 143865 CorA soluble domain-like
1 1 1 0 SCOP 89372 Fucose-specific lectin
1 1 1 0 SCOP 55608 Homing endonucleases
1 1 1 0 SCOP 50405 Actin-crosslinking proteins
1 1 1 1 SCOP 102645 CoaB-like
1 1 1 0 SCOP 118352 HSP33 redox switch-like
1 1 1 0 SCOP 54106 LysM domain
1 1 1 0 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 0 SCOP 52129 Caspase-like
1 1 1 0 SCOP 144206 NOB1 zinc finger-like
1 1 1 0 SCOP 158745 LanC-like
1 1 1 1 SCOP 68923 PEP carboxykinase N-terminal domain
1 1 1 0 SCOP 82679 N-utilization substance G protein NusG, N-terminal domain
1 1 1 0 SCOP 69055 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
1 1 1 0 SCOP 56037 PheT/TilS domain
1 1 1 1 SCOP 52418 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
1 1 1 0 SCOP 58014 Coiled-coil domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 63999 Thiamin pyrophosphokinase, catalytic domain
1 1 1 0 SCOP 141673 MOSC N-terminal domain-like
1 1 1 0 SCOP 142984 Nqo1 middle domain-like
1 1 1 1 SCOP 110111 Ctag/Cox11
1 1 1 0 SCOP 46966 Spectrin repeat
1 1 1 0 SCOP 49363 Purple acid phosphatase, N-terminal domain
1 1 1 1 SCOP 51989 Glycosyl hydrolases family 6, cellulases
1 1 1 0 SCOP 53623 MurD-like peptide ligases, catalytic domain
1 1 1 0 SCOP 81891 Poly A polymerase C-terminal region-like
1 1 1 0 SCOP 54810 GMP synthetase C-terminal dimerisation domain
1 1 1 1 SCOP 56425 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
1 1 1 1 SCOP 101904 GyrA/ParC C-terminal domain-like
1 1 1 0 SCOP 46977 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
1 1 1 0 SCOP 47144 HSC20 (HSCB), C-terminal oligomerisation domain
1 1 1 0 SCOP 47648 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
1 1 1 1 SCOP 56327 LDH C-terminal domain-like
1 1 1 0 SCOP 110836 Hypothetical protein SAV1430
1 1 1 0 SCOP 117289 Nucleoporin domain
1 1 1 1 SCOP 101887 Apyrase
1 1 1 0 SCOP 103647 TSP type-3 repeat
1 1 1 0 SCOP 49998 Amine oxidase catalytic domain
1 1 1 0 SCOP 69075 Glutamyl tRNA-reductase dimerization domain
1 1 1 0 SCOP 63882 MoeA N-terminal region -like
1 1 1 1 SCOP 55637 Cell cycle regulatory proteins
1 1 1 0 SCOP 101278 N-terminal domain of adenylylcyclase associated protein, CAP
1 1 1 0 SCOP 140860 Pseudo ankyrin repeat-like
1 1 1 0 SCOP 52413 UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
1 1 1 0 SCOP 55550 SH2 domain
1 1 1 0 SCOP 54782 Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
1 1 1 0 SCOP 140490 Nqo1C-terminal domain-like
1 1 1 0 SCOP 101576 Supernatant protein factor (SPF), C-terminal domain
1 1 1 1 SCOP 64397 Hsp33 domain
1 1 1 0 SCOP 55271 DNA repair protein MutS, domain I
1 1 1 0 SCOP 47928 N-terminal domain of the delta subunit of the F1F0-ATP synthase
1 1 1 0 SCOP 49854 Spermadhesin, CUB domain
1 1 1 1 SCOP 89817 Mago nashi protein
1 1 1 0 SCOP 54277 CAD & PB1 domains
1 1 1 0 SCOP 82109 MIR domain
1 1 1 0 SCOP 47938 Functional domain of the splicing factor Prp18
1 1 1 0 SCOP 140741 RUN domain-like
1 1 1 1 SCOP 140984 PTPA-like
1 1 1 1 SCOP 82051 Obg GTP-binding protein N-terminal domain
1 1 1 0 SCOP 69012 alpha-ketoacid dehydrogenase kinase, N-terminal domain
1 1 1 0 SCOP 109905 Surp module (SWAP domain)
1 1 1 1 SCOP 140102 ISY1 domain-like
1 1 1 0 SCOP 81531 Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
1 1 1 0 SCOP 48340 Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
1 1 1 0 SCOP 57414 Hairpin loop containing domain-like
1 1 1 0 SCOP 88688 Families 57/38 glycoside transferase middle domain
1 1 1 1 SCOP 142019 Nqo1 FMN-binding domain-like
1 1 1 0 SCOP 47050 VHP, Villin headpiece domain
1 1 1 0 SCOP 57567 Serine protease inhibitors
1 1 1 1 SCOP 101233 PWI domain
1 1 1 0 SCOP 109925 Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
1 1 1 0 SCOP 57774 Microbial and mitochondrial ADK, insert "zinc finger" domain
1 1 1 0 SCOP 57552 Blood coagulation inhibitor (disintegrin)
1 1 1 1 SCOP 117018 ATP-dependent DNA ligase DNA-binding domain
1 1 1 0 SCOP 64496 DNA-binding domain of intron-encoded endonucleases
1 1 1 0 SCOP 140111 Endosomal sorting complex assembly domain
1 1 1 0 SCOP 160527 V-type ATPase subunit E-like
1 1 1 0 SCOP 82215 C-terminal autoproteolytic domain of nucleoporin nup98
1 1 1 0 SCOP 53036 Eukaryotic RPB5 N-terminal domain
1 1 1 1 SCOP 50989 Clathrin heavy-chain terminal domain
1 1 1 1 SCOP 101391 Hsp90 co-chaperone CDC37
1 1 1 1 SCOP 81382 Skp1 dimerisation domain-like
1 1 1 0 SCOP 46942 Elongation factor TFIIS domain 2
1 1 1 0 SCOP 140427 VPS28 C-terminal domain-like
1 1 1 0 SCOP 159065 Dom34/Pelota N-terminal domain-like
1 1 1 0 SCOP 48034 Guanido kinase N-terminal domain
1 1 1 1 SCOP 69340 C-terminal domain of adenylylcyclase associated protein
1 1 1 0 SCOP 47031 Second domain of FERM
1 1 1 0 SCOP 88802 Pre-PUA domain
1 1 1 0 SCOP 63862 Thiamin pyrophosphokinase, substrate-binding domain
1 1 1 0 SCOP 160897 Taf5 N-terminal domain-like
1 1 1 0 SCOP 116878 TrmE connector domain
1 1 1 0 SCOP 51064 Head domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 140383 BSD domain-like
1 1 1 1 SCOP 54585 Cdc48 domain 2-like
1 1 1 0 SCOP 160219 AMPKBI-like
1 1 1 0 SCOP 140586 Dcp2 domain-like
1 1 1 0 SCOP 55035 NAD-binding domain of HMG-CoA reductase
1 1 1 0 SCOP 89009 GAT-like domain
1 1 1 0 SCOP 81496 Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
1 1 1 0 SCOP 81502 ISP transmembrane anchor
1 1 1 1 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 0 SCOP 63433 Fumarylacetoacetate hydrolase, FAH, N-terminal domain
1 1 1 0 SCOP 160467 PH0987 N-terminal domain-like
1 1 1 0 SCOP 109728 Hypothetical protein AF0491, middle domain
1 1 1 0 SCOP 109736 FGAM synthase PurL, linker domain
1 1 1 0 SCOP 160996 HI0933 insert domain-like
1 1 1 0 SCOP 101238 XPC-binding domain
1 1 1 0 SCOP 158230 PRP4-like

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The following superfamilies have one or more weak hits:

SCOP superfamily Troponin coil-coiled subunits
SCOP superfamily Head morphogenesis protein gp7
SCOP superfamily Dimerization motif of sir4
SCOP superfamily Notch domain
SCOP superfamily Dodecin-like
SCOP superfamily Mechanosensitive channel protein MscS (YggB), transmembrane region
SCOP superfamily Probable GTPase Der, C-terminal domain
SCOP superfamily Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor
SCOP superfamily Bacterial photosystem II reaction centre, L and M subunits
SCOP superfamily Cytochrome c oxidase subunit I-like
SCOP superfamily Mitochondrial cytochrome c oxidase subunit VIa
SCOP superfamily ABC transporter involved in vitamin B12 uptake, BtuC
SCOP superfamily Rad50 coiled-coil Zn hook
SCOP superfamily Mitotic arrest deficient-like 1, Mad1
SCOP superfamily Monomethylamine methyltransferase MtmB
SCOP superfamily Variable surface antigen VlsE
SCOP superfamily TolA/TonB C-terminal domain
SCOP superfamily C-terminal domain of PLC-beta
SCOP superfamily Colicin E3 receptor domain
SCOP superfamily LCCL domain
SCOP superfamily Tricorn protease N-terminal domain
SCOP superfamily Urease metallochaperone UreE, N-terminal domain
SCOP superfamily Rho N-terminal domain-like
SCOP superfamily SirA-like
SCOP superfamily Pyridoxine 5'-phosphate synthase
SCOP superfamily Telomeric repeat binding factor (TRF) dimerisation domain
SCOP superfamily Outer surface protein C (OspC)
SCOP superfamily Type I dockerin domain
SCOP superfamily Apolipoprotein A-I
SCOP superfamily Methyl-accepting chemotaxis protein (MCP) signaling domain
SCOP superfamily Bacterial hemolysins
SCOP superfamily Variant surface glycoprotein (N-terminal domain)
SCOP superfamily Influenza hemagglutinin (stalk)
SCOP superfamily N-terminal coiled coil domain from apc
SCOP superfamily Outer membrane lipoprotein
SCOP superfamily Multimerization domain of the phosphoprotein from sendai virus
SCOP superfamily XRCC4, C-terminal oligomerization domain
SCOP superfamily Fibrinogen coiled-coil and central regions
SCOP superfamily Ada DNA repair protein, N-terminal domain (N-Ada 10)
SCOP superfamily Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
SCOP superfamily Thyroglobulin type-1 domain
SCOP superfamily TNF receptor-like
SCOP superfamily Trefoil
SCOP superfamily Snake toxin-like
SCOP superfamily PMP inhibitors
SCOP superfamily Elafin-like
SCOP superfamily EGF/Laminin
SCOP superfamily Gurmarin-like
SCOP superfamily Outer membrane efflux proteins (OEP)
SCOP superfamily Bcl-2 inhibitors of programmed cell death
SCOP superfamily Conserved core of transcriptional regulatory protein vp16
SCOP superfamily A heparin-binding domain
SCOP superfamily Pyruvoyl-dependent histidine and arginine decarboxylases
SCOP superfamily SCP-like
SCOP superfamily Killer toxin KP6 alpha-subunit
SCOP superfamily Acylphosphatase/BLUF domain-like
SCOP superfamily Chalcone isomerase
SCOP superfamily Pili subunits
SCOP superfamily FucI/AraA N-terminal and middle domains
SCOP superfamily Formate dehydrogenase/DMSO reductase, domains 1-3
SCOP superfamily MurD-like peptide ligases, peptide-binding domain
SCOP superfamily DNA repair protein MutS, domain II
SCOP superfamily B12-dependent dehydatase associated subunit
SCOP superfamily N-(deoxy)ribosyltransferase-like
SCOP superfamily Bacterial luciferase-like
SCOP superfamily Thiamin phosphate synthase
SCOP superfamily Cyanovirin-N
SCOP superfamily Mannose-binding lectins
SCOP superfamily Thermostable phytase (3-phytase)
SCOP superfamily Cell growth inhibitor/plasmid maintenance toxic component
SCOP superfamily Myosin S1 fragment, N-terminal domain
SCOP superfamily gamma-Crystallin-like
SCOP superfamily alpha-Amylase inhibitor tendamistat
SCOP superfamily Multiheme cytochromes
SCOP superfamily Epsilon subunit of mitochondrial F1F0-ATP synthase
SCOP superfamily Moesin tail domain
SCOP superfamily Serum albumin-like
SCOP superfamily Tetracyclin repressor-like, C-terminal domain
SCOP superfamily Bacterial muramidases
SCOP superfamily Aldehyde ferredoxin oxidoreductase, C-terminal domains
SCOP superfamily Chondroitin AC/alginate lyase
SCOP superfamily NusB-like
SCOP superfamily Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
SCOP superfamily Apolipophorin-III
SCOP superfamily Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
SCOP superfamily lambda integrase-like, N-terminal domain
SCOP superfamily HLH, helix-loop-helix DNA-binding domain
SCOP superfamily Histidine-containing phosphotransfer domain, HPT domain
SCOP superfamily alpha-catenin/vinculin-like
SCOP superfamily Proteasome activator
SCOP superfamily Apolipoprotein
SCOP superfamily PGBD-like
SCOP superfamily Cysteine alpha-hairpin motif
SCOP superfamily Kix domain of CBP (creb binding protein)
SCOP superfamily PspA lactotransferrin-binding region
SCOP superfamily Zinc hairpin stack
SCOP superfamily YfgJ-like
SCOP superfamily ATP synthase B chain-like
SCOP superfamily CV3147-like
SCOP superfamily Jann2411-like
SCOP superfamily Rv2827c C-terminal domain-like
SCOP superfamily EscU C-terminal domain-like
SCOP superfamily BLRF2-like
SCOP superfamily Acetoacetate decarboxylase-like
SCOP superfamily Cgl1923-like
SCOP superfamily XCC0632-like
SCOP superfamily ENT-like
SCOP superfamily AF1782-like
SCOP superfamily occludin/ELL-like
SCOP superfamily Sec2 N-terminal region
SCOP superfamily Heterotrimerisation domain of extracellular hemoglobin linker subunits
SCOP superfamily Heme iron utilization protein-like
SCOP superfamily FdhE-like
SCOP superfamily FwdE-like
SCOP superfamily CarD-like
SCOP superfamily Topoisomerase V catalytic domain-like
SCOP superfamily Duffy binding domain-like
SCOP superfamily AF0941-like
SCOP superfamily Type III secretion system domain
SCOP superfamily MW0975(SA0943)-like
SCOP superfamily ChaB-like
SCOP superfamily MIT domain-like
SCOP superfamily AN1-like Zinc finger
SCOP superfamily Variant surface glycoprotein MITAT 1.2, VSG 221, C-terminal domain
SCOP superfamily YbjQ-like
SCOP superfamily Hook domain
SCOP superfamily Avirulence protein AvrPto
SCOP superfamily OmpH-like
SCOP superfamily Putative modulator of DNA gyrase, PmbA/TldD
SCOP superfamily Sporulation related repeat
SCOP superfamily Her-1
SCOP superfamily DinB/YfiT-like putative metalloenzymes
SCOP superfamily CAPPD, an extracellular domain of amyloid beta A4 protein
SCOP superfamily Cag-Z
SCOP superfamily Nickel-containing superoxide dismutase, NiSOD
SCOP superfamily PhoU-like
SCOP superfamily DEK C-terminal domain
SCOP superfamily KorB DNA-binding domain-like
SCOP superfamily Sec-C motif
SCOP superfamily Respiratory nitrate reductase 1 gamma chain
SCOP superfamily 2-methylcitrate dehydratase PrpD
SCOP superfamily Sensory domain-like
SCOP superfamily Holliday junction resolvase RusA
SCOP superfamily Trigger factor ribosome-binding domain
SCOP superfamily Creatininase
SCOP superfamily Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain
SCOP superfamily Hypothetical protein YgiW
SCOP superfamily P40 nucleoprotein
SCOP superfamily Methenyltetrahydrofolate cyclohydrolase-like
SCOP superfamily Flavivirus capsid protein C
SCOP superfamily Typo IV secretion system protein TraC

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.