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  Home > Genomes > Superfamily assignments for Candidatus Nasuia deltocephalinicola str. NAS-ALF


Candidatus Nasuia deltocephalinicola str. NAS-ALF superfamily assignments

Taxonomy
Taxonomy browser entry

Bacteria; Proteobacteria; Betaproteobacteria; unclassified Betaproteobacteria; Candidatus Nasuia; Candidatus Nasuia deltocephalinicola; Candidatus Nasuia deltocephalinicola str. NAS-ALF

Downloads
Fasta format sequences
Domain assignments

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Assignment statistics

Sequences: 137 total
114 (83 %) with assignment
250 average length
76 % amino acid coverage
Domains: 148 total
107 unique superfamilies
32 unique families
228 average length
1.4 average superfamily size
28 % formed by duplication
Domain combinations: 31 domain pairs
104 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies
9 8 4 1 SCOP 50249 Nucleic acid-binding proteins
6 6 6 2 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
6 5 4 1 SCOP 54211 Ribosomal protein S5 domain 2-like
3 2 2 0 SCOP 51905 FAD/NAD(P)-binding domain
3 3 3 1 SCOP 52374 Nucleotidylyl transferase
3 3 1 2 SCOP 53383 PLP-dependent transferases
3 3 2 0 SCOP 52402 Adenine nucleotide alpha hydrolases-like
3 3 2 0 SCOP 46626 Cytochrome c
3 3 3 1 SCOP 50447 Translation proteins
3 2 2 0 SCOP 63380 Riboflavin synthase domain-like
2 2 1 1 SCOP 51366 Ribulose-phoshate binding barrel
2 1 1 1 SCOP 53067 Actin-like ATPase domain
2 2 1 0 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
2 2 2 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
2 2 2 1 SCOP 55681 Class II aaRS and biotin synthetases
2 1 1 1 SCOP 51726 UROD/MetE-like
2 1 1 0 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
2 1 1 0 SCOP 54980 EF-G C-terminal domain-like
2 1 1 0 SCOP 56014 Nitrite and sulphite reductase 4Fe-4S domain-like
1 1 1 0 SCOP 53474 alpha/beta-Hydrolases
1 1 1 0 SCOP 52317 Class I glutamine amidotransferase-like
1 1 1 0 SCOP 57829 Zn-binding ribosomal proteins
1 1 1 0 SCOP 53790 Tetrapyrrole methylase
1 1 1 0 SCOP 74982 Small protein B (SmpB)
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 0 SCOP 46911 Ribosomal protein S18
1 1 1 1 SCOP 75304 Amidase signature (AS) enzymes
1 1 1 0 SCOP 52833 Thioredoxin-like
1 1 1 0 SCOP 54999 Ribosomal protein S10
1 1 1 0 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
1 1 1 0 SCOP 54570 Ribosomal protein S19
1 1 1 0 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 1 SCOP 50104 Translation proteins SH3-like domain
1 1 1 1 SCOP 55282 RL5-like
1 1 1 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
1 1 1 0 SCOP 56047 Ribosomal protein S8
1 1 1 0 SCOP 53137 Translational machinery components
1 1 1 0 SCOP 52080 Ribosomal proteins L15p and L18e
1 1 1 0 SCOP 57840 Ribosomal protein L36
1 1 1 0 SCOP 46946 S13-like H2TH domain
1 1 1 0 SCOP 64263 Prokaryotic ribosomal protein L17
1 1 1 0 SCOP 55120 Pseudouridine synthase
1 1 1 0 SCOP 143034 L35p-like
1 1 1 0 SCOP 74731 Ribosomal protein L20
1 1 1 0 SCOP 141091 L21p-like
1 1 1 0 SCOP 110324 Ribosomal L27 protein-like
1 1 1 1 SCOP 75620 Release factor
1 1 1 1 SCOP 53098 Ribonuclease H-like
1 1 1 0 SCOP 55174 Alpha-L RNA-binding motif
1 1 1 0 SCOP 82649 SufE/NifU
1 1 1 0 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
1 1 1 0 SCOP 53850 Periplasmic binding protein-like II
1 1 1 0 SCOP 52161 Ribosomal protein L13
1 1 1 0 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 0 SCOP 55194 Ribosome recycling factor, RRF
1 1 1 0 SCOP 51730 FAD-linked oxidoreductase
1 1 1 1 SCOP 53720 ALDH-like
1 1 1 0 SCOP 54862 4Fe-4S ferredoxins
1 1 1 0 SCOP 89360 HesB-like domain
1 1 1 0 SCOP 50715 Ribosomal protein L25-like
1 1 1 0 SCOP 54292 2Fe-2S ferredoxin-like
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 0 SCOP 102114 Radical SAM enzymes
1 1 1 1 SCOP 52096 ClpP/crotonase
1 1 1 1 SCOP 53254 Phosphoglycerate mutase-like
1 1 1 0 SCOP 52121 Lumazine synthase
1 1 1 0 SCOP 54995 Ribosomal protein S6
1 1 1 0 SCOP 50182 Sm-like ribonucleoproteins
1 1 1 0 SCOP 53328 Formyltransferase
1 1 1 0 SCOP 55257 RBP11-like subunits of RNA polymerase
1 1 1 1 SCOP 81442 Cytochrome c oxidase subunit I-like
1 1 1 0 SCOP 141734 HisI-like
1 1 1 1 SCOP 55931 Glutamine synthetase/guanido kinase
1 1 1 0 SCOP 88946 Sigma2 domain of RNA polymerase sigma factors
1 1 1 0 SCOP 49503 Cupredoxins
1 1 1 0 SCOP 89550 PHP domain-like
1 1 1 0 SCOP 54736 ClpS-like
1 1 1 0 SCOP 55200 Translation initiation factor IF3, C-terminal domain
1 1 1 0 SCOP 82689 Mechanosensitive channel protein MscS (YggB), C-terminal domain
1 1 1 0 SCOP 103025 Folate-binding domain
1 1 1 0 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
1 1 1 0 SCOP 46565 Chaperone J-domain
1 1 1 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
1 1 1 0 SCOP 52343 Ferredoxin reductase-like, C-terminal NADP-linked domain
1 1 1 0 SCOP 48024 N-terminal domain of DnaB helicase
1 1 1 1 SCOP 48592 GroEL equatorial domain-like
1 1 1 0 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
1 1 1 0 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 0 SCOP 47789 C-terminal domain of RNA polymerase alpha subunit
1 1 1 0 SCOP 58014 Coiled-coil domain of nucleotide exchange factor GrpE
1 1 1 1 SCOP 52029 GroEL apical domain-like
1 1 1 0 SCOP 48300 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
1 1 1 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
1 1 1 0 SCOP 54768 dsRNA-binding domain-like
1 1 1 0 SCOP 56053 Ribosomal protein L6
1 1 1 0 SCOP 55124 Nitrite/Sulfite reductase N-terminal domain-like
1 1 1 0 SCOP 46557 GreA transcript cleavage protein, N-terminal domain
1 1 1 0 SCOP 82051 Obg GTP-binding protein N-terminal domain
1 1 1 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
1 1 1 0 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 0 SCOP 54849 GroEL-intermediate domain like
1 1 1 0 SCOP 51064 Head domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 0 SCOP 54364 Translation initiation factor IF3, N-terminal domain

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The following superfamilies have one or more weak hits:

SCOP superfamily Cytochrome c oxidase subunit II-like, transmembrane region
SCOP superfamily DNA clamp
SCOP superfamily FKBP-like
SCOP superfamily ssDNA-binding transcriptional regulator domain
SCOP superfamily Ribosomal protein L11, C-terminal domain
SCOP superfamily AF1531-like
SCOP superfamily L28p-like
SCOP superfamily Heat shock protein 70kD (HSP70), C-terminal subdomain

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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