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Home > Genomes > Family assignments for Candidatus Nasuia deltocephalinicola str. NAS-ALF

Candidatus Nasuia deltocephalinicola str. NAS-ALF family assignments

Taxonomy
Taxonomy browser entry

Bacteria; Proteobacteria; Betaproteobacteria; unclassified Betaproteobacteria; Candidatus Nasuia; Candidatus Nasuia deltocephalinicola; Candidatus Nasuia deltocephalinicola str. NAS-ALF

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Domain assignments

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Assignment statistics

Sequences:	137	total
	114	(83 %) with assignment
	250	average length
	76	% amino acid coverage
Domains:	148	total
	107	unique superfamilies
	32	unique families
	228	average length
	1.4	average superfamily size
	28	% formed by duplication
Domain combinations:	31	domain pairs
Domain combinations:	104	unique architectures

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Family assignments

Domains	Proteins	SCOP link	Families
2	2	SCOP 53402	Cystathionine synthase-like
2	1	SCOP 110384	Cobalamin-independent methionine synthase
2	2	SCOP 52592	G proteins
2	2	SCOP 50282	Cold shock DNA-binding domain-like
2	1	SCOP 53068	Actin/HSP70
1	1	SCOP 64485	RNA-polymerase beta
1	1	SCOP 55682	Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
1	1	SCOP 55283	Ribosomal protein L5
1	1	SCOP 54212	Translational machinery components
1	1	SCOP 64490	RNA-polymerase beta-prime
1	1	SCOP 69602	L-histidinol dehydrogenase HisD
1	1	SCOP 75305	Amidase signature (AS) enzymes
1	1	SCOP 75621	Release factor
1	1	SCOP 81269	Extended AAA-ATPase domain
1	1	SCOP 81441	Cytochrome c oxidase subunit I-like
1	1	SCOP 100921	Heat shock protein 70kD (HSP70), peptide-binding domain
1	1	SCOP 117888	Ribosomal protein L16p
1	1	SCOP 47974	Ribosomal protein S7
1	1	SCOP 53384	AAT-like
1	1	SCOP 48593	GroEL chaperone, ATPase domain
1	1	SCOP 50114	C-terminal domain of ribosomal protein L2
1	1	SCOP 50194	Ribosomal protein L14
1	1	SCOP 50448	Elongation factors
1	1	SCOP 50466	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
1	1	SCOP 51367	Histidine biosynthesis enzymes
1	1	SCOP 52030	GroEL-like chaperone, apical domain
1	1	SCOP 52097	Clp protease, ClpP subunit
1	1	SCOP 52314	Ribosomal protein S2
1	1	SCOP 52375	Class I aminoacyl-tRNA synthetases (RS), catalytic domain
1	1	SCOP 53118	DnaQ-like 3'-5' exonuclease
1	1	SCOP 53255	Cofactor-dependent phosphoglycerate mutase
1	1	SCOP 143812	GatB/GatE catalytic domain-like

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The following families have one or more weak hits:

SCOP family O-acetyltransferase

SCOP family Ribosomal protein L33p

SCOP family Ribosomal protein L35p

SCOP family YhhF-like

SCOP family HisI-like

SCOP family Ribosomal protein L21p

SCOP family TrmE formyl-THF-binding domain

SCOP family Ribosomal L27 protein

SCOP family NifU/IscU domain

SCOP family Imidazole glycerol phosphate dehydratase

SCOP family Sigma2 domain of RNA polymerase sigma factors

SCOP family Sigma4 domain

SCOP family Mechanosensitive channel protein MscS (YggB), C-terminal domain

SCOP family PP-loop ATPase

SCOP family Mechanosensitive channel protein MscS (YggB), middle domain

SCOP family Obg GTP-binding protein N-terminal domain

SCOP family Pseudouridine synthase RsuA/RluD

SCOP family Small protein B (SmpB)

SCOP family Ribosomal protein L20

SCOP family Prokaryotic ribosomal protein L17

SCOP family Riboflavin synthase

SCOP family Ferredoxin reductase FAD-binding domain-like

SCOP family Coiled-coil domain of nucleotide exchange factor GrpE

SCOP family DnaJ/Hsp40 cysteine-rich domain

SCOP family Ribosomal protein L36

SCOP family Ribosomal protein S14

SCOP family Insert subdomain of RNA polymerase alpha subunit

SCOP family Ribosomal protein L6

SCOP family Ribosomal protein S8

SCOP family Nitrite and sulphite reductase 4Fe-4S domain-like

SCOP family Translation initiation factor IF3, C-terminal domain

SCOP family Ribosome recycling factor, RRF

SCOP family Ribosomal protein S4

SCOP family Ribosomal protein S10

SCOP family Ribosomal protein S6

SCOP family EF-G/eEF-2 domains III and V

SCOP family 7-Fe ferredoxin

SCOP family GroEL-like chaperone, intermediate domain

SCOP family Ribosomal protein L22

SCOP family Ribosomal protein S3 C-terminal domain

SCOP family Prokaryotic type KH domain (KH-domain type II)

SCOP family Ribosomal S5 protein, N-terminal domain

SCOP family Ribosomal L11/L12e N-terminal domain

SCOP family Ribosomal protein L7/12, C-terminal domain

SCOP family Ribosomal protein S19

SCOP family GreA transcript cleavage factor, C-terminal domain

SCOP family Translation initiation factor IF3, N-terminal domain

SCOP family L23p

SCOP family Phosphate binding protein-like

SCOP family Tetrapyrrole methylase

SCOP family Formyltransferase

SCOP family Ribosomal protein L18 and S11

SCOP family Thioltransferase

SCOP family Reductases

SCOP family Class I glutamine amidotransferases (GAT)

SCOP family Ribosomal protein L4

SCOP family Ribosomal protein L13

SCOP family Lumazine synthase

SCOP family Ribosomal proteins L15p and L18e

SCOP family FAD/NAD-linked reductases, N-terminal and central domains

SCOP family Methylenetetrahydrofolate reductase

SCOP family Head domain of nucleotide exchange factor GrpE

SCOP family Ribosomal protein L25-like

SCOP family Ribosomal protein L3

SCOP family Single strand DNA-binding domain, SSB

SCOP family Periplasmic domain of cytochrome c oxidase subunit II

SCOP family Ribosomal protein L7/12, oligomerisation (N-terminal) domain

SCOP family N-terminal domain of DnaB helicase

SCOP family Ribosomal protein S15

SCOP family Ribosomal protein S13

SCOP family Ribosomal protein S18

SCOP family Ribosomal protein L11, C-terminal domain

SCOP family Chaperone J-domain

SCOP family GreA transcript cleavage protein, N-terminal domain

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