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  Home > Genomes > Family assignments for Bacillus halodurans C-125


Bacillus halodurans C-125 family assignments

Taxonomy
Taxonomy browser entry

Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus halodurans; Bacillus halodurans C-125

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Fasta format sequences
Domain assignments

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Assignment statistics

Sequences: 4052 total
2713 (67 %) with assignment
293 average length
65 % amino acid coverage
Domains: 3919 total
758 unique superfamilies
661 unique families
286 average length
5.2 average superfamily size
81 % formed by duplication
Domain combinations: 511 domain pairs
1128 unique architectures

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Family assignments

Domains

Proteins

SCOP link

Families
68 68 SCOP 52686 ABC transporter ATPase domain-like
29 29 SCOP 53851 Phosphate binding protein-like
21 21 SCOP 51751 Tyrosine-dependent oxidoreductases
19 17 SCOP 81269 Extended AAA-ATPase domain
18 18 SCOP 161099 MetI-like
16 16 SCOP 53823 L-arabinose binding protein-like
15 10 SCOP 81268 Tandem AAA-ATPase domain
14 14 SCOP 53417 GABA-aminotransferase-like
14 14 SCOP 53721 ALDH-like
13 13 SCOP 53402 Cystathionine synthase-like
12 11 SCOP 52592 G proteins
12 7 SCOP 53902 Thiolase-related
11 11 SCOP 51883 Aminoacid dehydrogenase-like, C-terminal domain
11 11 SCOP 53384 AAT-like
11 11 SCOP 55682 Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
10 10 SCOP 52375 Class I aminoacyl-tRNA synthetases (RS), catalytic domain
10 10 SCOP 58105 Methyl-accepting chemotaxis protein (MCP) signaling domain
10 9 SCOP 75648 ABC transporter involved in vitamin B12 uptake, BtuC
9 9 SCOP 52173 CheY-related
9 9 SCOP 52744 Subtilases
9 9 SCOP 56602 beta-Lactamase/D-ala carboxypeptidase
8 8 SCOP 51446 Amylase, catalytic domain
8 6 SCOP 52441 BC N-terminal domain-like
8 4 SCOP 53068 Actin/HSP70
8 8 SCOP 53272 Phosphoribosyltransferases (PRTases)
8 6 SCOP 56067 BC ATP-binding domain-like
8 8 SCOP 56802 Acetyl-CoA synthetase-like
8 8 SCOP 90124 ABC transporter transmembrane region
7 7 SCOP 51487 beta-glycanases
7 7 SCOP 52318 Class I glutamine amidotransferases (GAT)
7 7 SCOP 53224 Aminoacid dehydrogenases
6 6 SCOP 52103 Crotonase-like
6 6 SCOP 52652 Nitrogenase iron protein-like
6 6 SCOP 52670 RecA protein-like (ATPase-domain)
6 6 SCOP 52778 CAT-like
6 6 SCOP 52901 Glutathione peroxidase-like
6 6 SCOP 55730 N-acetyl transferase, NAT
6 4 SCOP 89572 Biotin dependent carboxylase carboxyltransferase domain
5 5 SCOP 50282 Cold shock DNA-binding domain-like
5 5 SCOP 51396 FMN-linked oxidoreductases
5 5 SCOP 51570 Class I aldolase
5 5 SCOP 51868 6-phosphogluconate dehydrogenase-like, N-terminal domain
5 5 SCOP 53614 Ribokinase-like
5 5 SCOP 53687 Tryptophan synthase beta subunit-like PLP-dependent enzymes
5 5 SCOP 54632 CBS-domain pair
5 5 SCOP 55425 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
5 5 SCOP 88741 Branched-chain alpha-keto acid dehydrogenase Pyr module
5 5 SCOP 88766 Branched-chain alpha-keto acid dehydrogenase PP module
5 5 SCOP 142721 PyrH-like
4 4 SCOP 48558 L-aspartase/fumarase
4 2 SCOP 49925 Glycosyl hydrolases family 16
4 4 SCOP 51262 Glucose permease-like
4 4 SCOP 51431 Aldo-keto reductases (NADP)
4 4 SCOP 51800 Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
4 4 SCOP 51830 Formate/glycerate dehydrogenases, NAD-domain
4 4 SCOP 51848 LDH N-terminal domain-like
4 4 SCOP 52403 N-type ATP pyrophosphatases
4 4 SCOP 52541 Nucleotide and nucleoside kinases
4 4 SCOP 52926 Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
4 4 SCOP 53168 Purine and uridine phosphorylases
4 4 SCOP 53204 Bacterial dinuclear zinc exopeptidases
4 4 SCOP 55209 Enolpyruvate transferase, EPT
4 4 SCOP 55348 GAPDH-like
4 4 SCOP 55921 Creatinase/aminopeptidase
4 4 SCOP 56236 Class II glutamine amidotransferases
4 4 SCOP 56646 Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
4 2 SCOP 63521 PTS-regulatory domain, PRD
4 4 SCOP 102517 N-acetylmuramoyl-L-alanine amidase-like
4 4 SCOP 159832 PBP transglycosylase domain-like
3 3 SCOP 47204 Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
3 3 SCOP 50136 Alcohol dehydrogenase-like, N-terminal domain
3 3 SCOP 50448 Elongation factors
3 3 SCOP 50678 ValRS/IleRS/LeuRS editing domain
3 3 SCOP 51247 BC C-terminal domain-like
3 3 SCOP 51521 Family 1 of glycosyl hydrolase
3 3 SCOP 51704 Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain
3 3 SCOP 52584 Phosphoribulokinase/pantothenate kinase
3 3 SCOP 52769 Arginase-like amidino hydrolases
3 3 SCOP 53660 Dimeric isocitrate & isopropylmalate dehydrogenases
3 3 SCOP 53707 Formate dehydrogenase/DMSO reductase, domains 1-3
3 3 SCOP 53811 TroA-like
3 3 SCOP 53914 Chalcone synthase-like
3 3 SCOP 54212 Translational machinery components
3 2 SCOP 54229 Ribonuclease PH domain 1-like
3 3 SCOP 55879 DNA gyrase/MutL, N-terminal domain
3 1 SCOP 55974 S-adenosylmethionine synthetase
3 3 SCOP 56530 FAH
3 3 SCOP 56753 D-aminoacid aminotransferase-like PLP-dependent enzymes
3 3 SCOP 63944 Potassium channel NAD-binding domain
3 3 SCOP 75459 Pseudouridine synthase RsuA/RluD
3 3 SCOP 75513 IclR ligand-binding domain-like
3 3 SCOP 81441 Cytochrome c oxidase subunit I-like
3 3 SCOP 101340 HD domain
3 3 SCOP 102945 RelA/SpoT domain
3 3 SCOP 117372 YicI catalytic domain-like
3 3 SCOP 143642 LplA-like
3 3 SCOP 161071 SNF-like
3 3 SCOP 161094 MgtE membrane domain-like
2 2 SCOP 46463 Globins
2 2 SCOP 47241 Ferritin
2 2 SCOP 47324 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
2 2 SCOP 47730 Prokaryotic DNA-bending protein
2 2 SCOP 47918 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 SCOP 48257 Citrate synthase
2 2 SCOP 48265 Cytochrome P450
2 2 SCOP 48577 Isoprenyl diphosphate synthases
2 2 SCOP 50277 Myf domain
2 2 SCOP 50616 N-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 SCOP 51174 gamma-carbonic anhydrase-like
2 2 SCOP 51231 Biotinyl/lipoyl-carrier proteins and domains
2 2 SCOP 51367 Histidine biosynthesis enzymes
2 2 SCOP 51381 Tryptophan biosynthesis enzymes
2 2 SCOP 51420 Alanine racemase-like, N-terminal domain
2 2 SCOP 51553 NagZ-like
2 2 SCOP 51564 Phosphotriesterase-like
2 2 SCOP 51591 Class II FBP aldolase
2 2 SCOP 51943 FAD/NAD-linked reductases, N-terminal and central domains
2 2 SCOP 52022 Carbamoyl phosphate synthetase, small subunit N-terminal domain
2 2 SCOP 52097 Clp protease, ClpP subunit
2 2 SCOP 52211 Succinyl-CoA synthetase domains
2 2 SCOP 52243 Cobalamin (vitamin B12)-binding domain
2 2 SCOP 52297 L-alanine dehydrogenase-like
2 2 SCOP 52397 Adenylyltransferase
2 2 SCOP 52419 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
2 2 SCOP 52508 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
2 2 SCOP 52789 Low-molecular-weight phosphotyrosine protein phosphatases
2 1 SCOP 53080 Acetokinase-like
2 1 SCOP 53089 Glycerol kinase
2 2 SCOP 53099 Ribonuclease H
2 2 SCOP 53138 Ribosomal protein L18 and S11
2 2 SCOP 53240 Malic enzyme N-domain
2 2 SCOP 53329 Formyltransferase
2 2 SCOP 53449 Spore coat polysaccharide biosynthesis protein SpsA
2 2 SCOP 53464 glucose-1-phosphate thymidylyltransferase
2 2 SCOP 53487 Carboxylesterase
2 2 SCOP 53620 Thiamin biosynthesis kinases
2 2 SCOP 53672 Aspartate/ornithine carbamoyltransferase
2 2 SCOP 53733 Aconitase iron-sulfur domain
2 2 SCOP 54224 DNA gyrase/MutL, second domain
2 2 SCOP 54232 GHMP Kinase, N-terminal domain
2 2 SCOP 54638 4HBT-like
2 2 SCOP 54720 Fe,Mn superoxide dismutase (SOD), C-terminal domain
2 2 SCOP 54815 Prokaryotic type KH domain (KH-domain type II)
2 2 SCOP 54877 Single 4Fe-4S cluster ferredoxin
2 1 SCOP 54981 EF-G/eEF-2 domains III and V
2 2 SCOP 55069 Peptide methionine sulfoxide reductase
2 2 SCOP 55327 PurM N-terminal domain-like
2 2 SCOP 55368 Dihydrodipicolinate reductase-like
2 2 SCOP 55470 NADH oxidase/flavin reductase
2 2 SCOP 55595 HPr-like
2 1 SCOP 55633 Urate oxidase (uricase)
2 2 SCOP 55667 Ribonuclease PH domain 2-like
2 2 SCOP 55884 Histidine kinase
2 2 SCOP 55932 Glutamine synthetase catalytic domain
2 2 SCOP 56004 Molybdenum cofactor-binding domain
2 1 SCOP 56015 Nitrite and sulphite reductase 4Fe-4S domain-like
2 2 SCOP 56043 PurM C-terminal domain-like
2 1 SCOP 56054 Ribosomal protein L6
2 2 SCOP 56323 ADC synthase
2 2 SCOP 56328 Lactate & malate dehydrogenases, C-terminal domain
2 2 SCOP 56350 Lambda integrase-like, catalytic core
2 2 SCOP 56520 Penicillin binding protein dimerisation domain
2 2 SCOP 56635 Heme-dependent catalases
2 2 SCOP 56713 Prokaryotic type I DNA topoisomerase
2 2 SCOP 56720 Type II DNA topoisomerase
2 2 SCOP 63379 MarR-like transcriptional regulators
2 2 SCOP 63801 ATP sulfurylase N-terminal domain
2 2 SCOP 63979 ATP sulfurylase catalytic domain
2 2 SCOP 64519 Phase 1 flagellin
2 2 SCOP 69066 RNase III catalytic domain-like
2 2 SCOP 69892 Iron-containing alcohol dehydrogenase
2 2 SCOP 74656 CoA transferase alpha subunit-like
2 2 SCOP 74657 CoA transferase beta subunit-like
2 1 SCOP 74753 Catalase-peroxidase KatG
2 2 SCOP 75073 Hydantoinase (dihydropyrimidinase), catalytic domain
2 2 SCOP 75082 Uronate isomerase-like
2 2 SCOP 75218 SpoU-like RNA 2'-O ribose methyltransferase
2 2 SCOP 75621 Release factor
2 2 SCOP 81451 Cytochrome c oxidase subunit III-like
2 2 SCOP 82075 Kid/PemK
2 2 SCOP 82258 SAH/MTA deaminase-like
2 2 SCOP 82283 Homocysteine S-methyltransferase
2 2 SCOP 82388 Predicted hydrolases Cof
2 1 SCOP 82867 Multidrug efflux transporter AcrB transmembrane domain
2 2 SCOP 88704 Phosphoenolpyruvate mutase/Isocitrate lyase-like
2 2 SCOP 88724 Pyruvate oxidase and decarboxylase Pyr module
2 2 SCOP 89388 Composite domain of glycosyl hydrolase families 5, 30, 39 and 51
2 2 SCOP 89559 NodB-like polysaccharide deacetylase
2 2 SCOP 89800 Deoxycytidylate deaminase-like
2 2 SCOP 90050 AglA-like glucosidase
2 2 SCOP 90084 Glutaminase
2 2 SCOP 90087 GlpX-like bacterial fructose-1,6-bisphosphatase
2 2 SCOP 100888 Lesion bypass DNA polymerase (Y-family), catalytic domain
2 2 SCOP 100951 Manganese catalase (T-catalase)
2 2 SCOP 101308 YutG-like
2 2 SCOP 101822 Aminopeptidase/glucanase lid domain
2 2 SCOP 101905 GyrA/ParC C-terminal domain-like
2 2 SCOP 102406 MoCo carrier protein-like
2 2 SCOP 102928 NifU/IscU domain
2 2 SCOP 109613 DAK1
2 2 SCOP 110377 UxuA-like
2 1 SCOP 110384 Cobalamin-independent methionine synthase
2 2 SCOP 110636 ROK
2 2 SCOP 111338 QueA-like
2 2 SCOP 117984 GGDEF domain
2 2 SCOP 142678 Glycine dehydrogenase subunits (GDC-P)
2 1 SCOP 143860 Polyphosphate kinase C-terminal domain
2 2 SCOP 144053 Thermophilic metalloprotease (M29)
2 1 SCOP 158431 Bacillus cereus metalloprotein-like
2 2 SCOP 158561 BH3980-like
2 2 SCOP 159299 Gentisate 1,2-dioxygenase-like
2 2 SCOP 159545 SorC sugar-binding domain-like
1 1 SCOP 46459 Truncated hemoglobin
1 1 SCOP 46610 Fe,Mn superoxide dismutase (SOD), N-terminal domain
1 1 SCOP 46768 Methylated DNA-protein cysteine methyltransferase, C-terminal domain
1 1 SCOP 46792 Arginine repressor (ArgR), N-terminal DNA-binding domain
1 1 SCOP 46903 Spo0A
1 1 SCOP 46907 Ribosomal protein L11, C-terminal domain
1 1 SCOP 46947 Ribosomal protein S13
1 1 SCOP 46962 DNA-binding N-terminal domain of transcription activators
1 1 SCOP 47064 Ribosomal protein S15
1 1 SCOP 47253 Ribonucleotide reductase-like
1 1 SCOP 47337 Acyl-carrier protein (ACP)
1 1 SCOP 47447 Signal peptide-binding domain
1 1 SCOP 47649 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
1 1 SCOP 47786 NAD+-dependent DNA ligase, domain 3
1 1 SCOP 47790 C-terminal domain of RNA polymerase alpha subunit
1 1 SCOP 47974 Ribosomal protein S7
1 1 SCOP 47980 Iron-dependent repressor protein, dimerization domain
1 1 SCOP 48025 N-terminal domain of DnaB helicase
1 1 SCOP 48030 FliG
1 1 SCOP 48109 Carbamoyl phosphate synthetase, large subunit connection domain
1 1 SCOP 48151 Endonuclease III
1 1 SCOP 48154 Mismatch glycosylase
1 1 SCOP 48184 Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI)
1 1 SCOP 48191 UDP-glucose/GDP-mannose dehydrogenase dimerisation domain
1 1 SCOP 48197 Glycerol-3-phosphate dehydrogenase
1 1 SCOP 48213 Cellulases catalytic domain
1 1 SCOP 48335 DNA repair protein MutS, domain III
1 1 SCOP 48499 Tetracyclin repressor-like, C-terminal domain
1 1 SCOP 48572 HAL/PAL-like
1 1 SCOP 48593 GroEL chaperone, ATPase domain
1 1 SCOP 49803 beta-Galactosidase/glucuronidase, N-terminal domain
1 1 SCOP 49978 Xylanase/endoglucanase 11/12
1 1 SCOP 50114 C-terminal domain of ribosomal protein L2
1 1 SCOP 50130 GroES
1 1 SCOP 50194 Ribosomal protein L14
1 1 SCOP 50250 Anticodon-binding domain
1 1 SCOP 50325 Inorganic pyrophosphatase
1 1 SCOP 50342 CheW-like
1 1 SCOP 50438 NADPH-cytochrome p450 reductase FAD-binding domain-like
1 1 SCOP 50461 Ribosomal protein L3
1 1 SCOP 50466 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
1 1 SCOP 50476 PNP-oxidase like
1 1 SCOP 50495 Prokaryotic proteases
1 1 SCOP 50693 Pyruvoyl dependent aspartate decarboxylase, ADC
1 1 SCOP 50716 Ribosomal protein L25-like
1 1 SCOP 50801 Pyruvate kinase beta-barrel domain
1 1 SCOP 51070 Carbonic anhydrase
1 1 SCOP 51127 Pectate lyase-like
1 1 SCOP 51168 Galactoside acetyltransferase-like
1 1 SCOP 51171 GlmU C-terminal domain-like
1 1 SCOP 51191 Type I phosphomannose isomerase
1 1 SCOP 51220 Trp RNA-binding attenuation protein (TRAP)
1 1 SCOP 51279 Urease, beta-subunit
1 1 SCOP 51284 dUTPase-like
1 1 SCOP 51339 alpha-Subunit of urease
1 1 SCOP 51352 Triosephosphate isomerase (TIM)
1 1 SCOP 51372 D-ribulose-5-phosphate 3-epimerase
1 1 SCOP 51375 Decarboxylase
1 1 SCOP 51392 Thiamin phosphate synthase
1 1 SCOP 51413 Inosine monophosphate dehydrogenase (IMPDH)
1 1 SCOP 51534 Type II chitinase
1 1 SCOP 51560 alpha-subunit of urease, catalytic domain
1 1 SCOP 51594 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
1 1 SCOP 51599 Class I DAHP synthetase
1 1 SCOP 51605 Enolase
1 1 SCOP 51609 D-glucarate dehydratase-like
1 1 SCOP 51622 Pyruvate kinase
1 1 SCOP 51646 Malate synthase G
1 1 SCOP 51659 Endonuclease IV
1 1 SCOP 51662 L-rhamnose isomerase
1 1 SCOP 51665 Xylose isomerase
1 1 SCOP 51691 NadC C-terminal domain-like
1 1 SCOP 51714 tRNA-guanine transglycosylase
1 1 SCOP 51718 Dihydropteroate synthetase
1 1 SCOP 51727 Uroporphyrinogen decarboxylase, UROD
1 1 SCOP 51736 Alcohol dehydrogenase-like, C-terminal domain
1 1 SCOP 51900 CoA-binding domain
1 1 SCOP 51934 Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
1 1 SCOP 52002 R1 subunit of ribonucleotide reductase, C-terminal domain
1 1 SCOP 52017 LeuD-like
1 1 SCOP 52030 GroEL-like chaperone, apical domain
1 1 SCOP 52081 Ribosomal proteins L15p and L18e
1 1 SCOP 52092 Anti-sigma factor antagonist SpoIIaa
1 1 SCOP 52100 Tail specific protease, catalytic domain
1 1 SCOP 52122 Lumazine synthase
1 1 SCOP 52142 Uracil-DNA glycosylase
1 1 SCOP 52152 FabD-like
1 1 SCOP 52162 Ribosomal protein L13
1 1 SCOP 52167 Ribosomal protein L4
1 1 SCOP 52256 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
1 1 SCOP 52305 Type II 3-dehydroquinate dehydratase
1 1 SCOP 52314 Ribosomal protein S2
1 1 SCOP 52325 DJ-1/PfpI
1 1 SCOP 52339 Methylglyoxal synthase, MgsA
1 1 SCOP 52362 Dihydroorotate dehydrogenase B, PyrK subunit
1 1 SCOP 52365 NADPH-cytochrome p450 reductase-like
1 1 SCOP 52432 ETFP subunits
1 1 SCOP 52471 C-terminal domain of the electron transfer flavoprotein alpha subunit
1 1 SCOP 52491 Tubulin, GTPase domain
1 1 SCOP 52513 NagB-like
1 1 SCOP 52734 Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
1 1 SCOP 52739 Methylesterase CheB, C-terminal domain
1 1 SCOP 52773 Histone deacetylase, HDAC
1 1 SCOP 52923 Transketolase C-terminal domain-like
1 1 SCOP 52944 ATP synthase (F1-ATPase), gamma subunit
1 1 SCOP 52955 Anticodon-binding domain of Class II aaRS
1 1 SCOP 52973 ITPase (Ham1)
1 1 SCOP 52976 Maf-like
1 1 SCOP 53045 5' to 3' exonuclease catalytic domain
1 1 SCOP 53057 beta-carbonic anhydrase, cab
1 1 SCOP 53118 DnaQ-like 3'-5' exonuclease
1 1 SCOP 53179 Peptidyl-tRNA hydrolase-like
1 1 SCOP 53183 Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
1 1 SCOP 53201 Leucine aminopeptidase, C-terminal domain
1 1 SCOP 53219 MogA-like
1 1 SCOP 53235 Tetrahydrofolate dehydrogenase/cyclohydrolase
1 1 SCOP 53245 MurCDEF C-terminal domain
1 1 SCOP 53296 Phosphoribosylpyrophosphate synthetase-like
1 1 SCOP 53345 Hypothetical protein MJ0882
1 1 SCOP 53461 UDP-glucose pyrophosphorylase
1 1 SCOP 53547 Carboxylesterase/thioesterase 1
1 1 SCOP 53591 Nucleoside hydrolase
1 1 SCOP 53598 Dihydrofolate reductases
1 1 SCOP 53624 MurCDEF
1 1 SCOP 53629 Folylpolyglutamate synthetase
1 1 SCOP 53640 AraD-like aldolase/epimerase
1 1 SCOP 53650 Alkaline phosphatase
1 1 SCOP 53698 double-SIS domain
1 1 SCOP 53701 Phosphoglucose isomerase, PGI
1 1 SCOP 53749 Phosphoglycerate kinase
1 1 SCOP 53760 Peptidoglycan biosynthesis glycosyltransferase MurG
1 1 SCOP 53766 Oligosaccharide phosphorylase
1 1 SCOP 53775 Glutaminase/Asparaginase
1 1 SCOP 53785 Phosphofructokinase
1 1 SCOP 53791 Tetrapyrrole methylase
1 1 SCOP 53796 PEP carboxykinase C-terminal domain
1 1 SCOP 53801 Ferrochelatase
1 1 SCOP 53928 Cytidine deaminase
1 1 SCOP 54112 Urease, gamma-subunit
1 1 SCOP 54198 HIT (HINT, histidine triad) family of protein kinase-interacting proteins
1 1 SCOP 54220 RNase P protein
1 1 SCOP 54365 Translation initiation factor IF3, N-terminal domain
1 1 SCOP 54507 Diaminopimelate epimerase
1 1 SCOP 54535 FKBP immunophilin/proline isomerase
1 1 SCOP 54557 Chitinase insertion domain
1 1 SCOP 54571 Ribosomal protein S19
1 1 SCOP 54681 Pyrimidine nucleoside phosphorylase C-terminal domain
1 1 SCOP 54714 Elongation factor Ts (EF-Ts), dimerisation domain
1 1 SCOP 54737 Ribosomal protein L7/12, C-terminal domain
1 1 SCOP 54748 Ribosomal L11/L12e N-terminal domain
1 1 SCOP 54778 Ribosomal S5 protein, N-terminal domain
1 1 SCOP 54811 GMP synthetase C-terminal dimerisation domain
1 1 SCOP 54822 Ribosomal protein S3 C-terminal domain
1 1 SCOP 54827 Enolase N-terminal domain-like
1 1 SCOP 54844 Ribosomal protein L22
1 1 SCOP 54920 Nucleoside diphosphate kinase, NDK
1 1 SCOP 55000 Ribosomal protein S10
1 1 SCOP 55041 Molybdenum cofactor biosynthesis protein C, MoaC
1 1 SCOP 55084 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
1 1 SCOP 55121 Pseudouridine synthase I TruA
1 1 SCOP 55178 Ribosomal protein S4
1 1 SCOP 55187 Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
1 1 SCOP 55195 Ribosome recycling factor, RRF
1 1 SCOP 55201 Translation initiation factor IF3, C-terminal domain
1 1 SCOP 55253 C-terminal domain of arginine repressor
1 1 SCOP 55262 GAD domain
1 1 SCOP 55272 DNA repair protein MutS, domain I
1 1 SCOP 55283 Ribosomal protein L5
1 1 SCOP 55299 YjgF/L-PSP
1 1 SCOP 55304 Chorismate mutase
1 1 SCOP 55308 Tubulin, C-terminal domain
1 1 SCOP 55505 Neurolysin-like
1 1 SCOP 55621 GTP cyclohydrolase I
1 1 SCOP 55628 DHN aldolase/epimerase
1 1 SCOP 55654 Ribosomal protein L9 C-domain
1 1 SCOP 55707 Biotin holoenzyme synthetase
1 1 SCOP 55782 GAF domain
1 1 SCOP 55805 IIA domain of mannitol-specific and ntr phosphotransferase EII
1 1 SCOP 55817 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
1 1 SCOP 55822 YrdC-like
1 1 SCOP 55832 Thymidylate synthase/dCMP hydroxymethylase
1 1 SCOP 55875 Heat shock protein 90, HSP90, N-terminal domain
1 1 SCOP 55891 Sporulation response regulatory protein Spo0B
1 1 SCOP 55935 Guanido kinase catalytic domain
1 1 SCOP 56038 B3/B4 domain of PheRS, PheT
1 1 SCOP 56048 Ribosomal protein S8
1 1 SCOP 56081 Succinyl-CoA synthetase, beta-chain, N-terminal domain
1 1 SCOP 56096 Adenylation domain of NAD+-dependent DNA ligase
1 1 SCOP 56105 SAICAR synthase
1 1 SCOP 56184 Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain
1 1 SCOP 56251 Proteasome subunits
1 1 SCOP 56307 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain
1 1 SCOP 56421 Peptide deformylase
1 1 SCOP 56508 Methionine synthase SAM-binding domain
1 1 SCOP 56513 Nitric oxide (NO) synthase oxygenase domain
1 1 SCOP 56554 Insert subdomain of RNA polymerase alpha subunit
1 1 SCOP 56656 Inositol monophosphatase/fructose-1,6-bisphosphatase-like
1 1 SCOP 56673 DNA polymerase I
1 1 SCOP 56732 DNA primase DnaG catalytic core
1 1 SCOP 56797 Dehydroquinate synthase, DHQS
1 1 SCOP 56809 Ribosomal protein L1
1 1 SCOP 56895 Aquaporin-like
1 1 SCOP 57792 DNA primase zinc finger
1 1 SCOP 63412 MPP-like
1 1 SCOP 63783 Riboflavin synthase
1 1 SCOP 63818 Sortase
1 1 SCOP 63883 MoeA N-terminal region -like
1 1 SCOP 63912 1,4-beta-N-acetylmuraminidase
1 1 SCOP 63971 Inosicase
1 1 SCOP 63976 Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
1 1 SCOP 63984 Sir2 family of transcriptional regulators
1 1 SCOP 64006 Undecaprenyl diphosphate synthase
1 1 SCOP 64095 Germination protease
1 1 SCOP 64159 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
1 1 SCOP 64162 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, catalytic domain
1 1 SCOP 64186 HPr kinase HprK C-terminal domain
1 1 SCOP 64198 AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
1 1 SCOP 64264 Prokaryotic ribosomal protein L17
1 1 SCOP 64294 Autoinducer-2 production protein LuxS
1 1 SCOP 64372 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
1 1 SCOP 64398 Hsp33 domain
1 1 SCOP 64485 RNA-polymerase beta
1 1 SCOP 64490 RNA-polymerase beta-prime
1 1 SCOP 68901 Cytidylytransferase
1 1 SCOP 68924 PEP carboxykinase N-terminal domain
1 1 SCOP 69213 Family 6 carbohydrate binding module, CBM6
1 1 SCOP 69337 Alpha subunit of glutamate synthase, C-terminal domain
1 1 SCOP 69501 DTD-like
1 1 SCOP 69518 ArsC-like
1 1 SCOP 69557 Spermidine synthase
1 1 SCOP 69565 Pyridoxal-dependent decarboxylase
1 1 SCOP 69599 mono-SIS domain
1 1 SCOP 69602 L-histidinol dehydrogenase HisD
1 1 SCOP 69619 HemD-like
1 1 SCOP 69706 Transcription factor NusA, N-terminal domain
1 1 SCOP 69738 Urease metallochaperone UreE, C-terminal domain
1 1 SCOP 69746 Pseudouridine synthase II TruB
1 1 SCOP 69766 IpsF-like
1 1 SCOP 69865 Argininosuccinate synthetase, C-terminal domain
1 1 SCOP 74732 Ribosomal protein L20
1 1 SCOP 74756 3-Methyladenine DNA glycosylase I (Tag)
1 1 SCOP 74911 Aldose 1-epimerase (mutarotase)
1 1 SCOP 74983 Small protein B (SmpB)
1 1 SCOP 75006 alpha-L-arabinanase-like
1 1 SCOP 75041 SelR domain
1 1 SCOP 75079 Renal dipeptidase
1 1 SCOP 75090 IolI-like
1 1 SCOP 75139 HPr kinase/phoshatase HprK N-terminal domain
1 1 SCOP 75173 beta-Phosphoglucomutase-like
1 1 SCOP 75264 Glucose-inhibited division protein B (GidB)
1 1 SCOP 75297 N-acetyl-l-glutamate kinase
1 1 SCOP 75305 Amidase signature (AS) enzymes
1 1 SCOP 75323 Exonuclease RecJ
1 1 SCOP 75472 YhbY-like
1 1 SCOP 75554 Smc hinge domain
1 1 SCOP 75626 YebC-like
1 1 SCOP 81282 E-set domains of sugar-utilizing enzymes
1 1 SCOP 81605 PP2C-like
1 1 SCOP 81623 N-terminal domain of MutM-like DNA repair proteins
1 1 SCOP 81642 Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
1 1 SCOP 81656 Meta-cation ATPase, catalytic domain P
1 1 SCOP 81664 Calcium ATPase, transmembrane domain M
1 1 SCOP 81695 Chromosomal replication initiation factor DnaA C-terminal domain IV
1 1 SCOP 81768 Pre-protein crosslinking domain of SecA
1 1 SCOP 81800 Putative methyltransferase TM0872, insert domain
1 1 SCOP 81887 Helical scaffold and wing domains of SecA
1 1 SCOP 81892 Poly A polymerase C-terminal region-like
1 1 SCOP 82052 Obg GTP-binding protein N-terminal domain
1 1 SCOP 82253 alpha-D-glucuronidase/Hyaluronidase catalytic domain
1 1 SCOP 82261 N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain
1 1 SCOP 82267 TatD Mg-dependent DNase-like
1 1 SCOP 82336 Shikimate dehydrogenase-like
1 1 SCOP 82371 YbeA-like
1 1 SCOP 82475 MraW-like putative methyltransferases
1 1 SCOP 82504 Acetyl xylan esterase-like
1 1 SCOP 82550 DegV-like
1 1 SCOP 82583 G domain-linked domain
1 1 SCOP 82680 N-utilization substance G protein NusG, N-terminal domain
1 1 SCOP 82698 PurS subunit of FGAM synthetase
1 1 SCOP 88682 Alanine racemase
1 1 SCOP 88683 Eukaryotic ODC-like
1 1 SCOP 88735 TK-like Pyr module
1 1 SCOP 88760 TK-like PP module
1 1 SCOP 88784 rRNA adenine dimethylase-like
1 1 SCOP 88786 C5 cytosine-specific DNA methylase, DCM
1 1 SCOP 88788 N6 adenine-specific DNA methylase, DAM
1 1 SCOP 88854 Protein kinases, catalytic subunit
1 1 SCOP 88947 Sigma2 domain of RNA polymerase sigma factors
1 1 SCOP 89032 Cobalamin adenosyltransferase
1 1 SCOP 89096 GatB/YqeY domain
1 1 SCOP 89108 Hypothetical protein YteR
1 1 SCOP 89443 Hypothetical protein YojF
1 1 SCOP 89489 Isoaspartyl dipeptidase, catalytic domain
1 1 SCOP 89494 HMGL-like
1 1 SCOP 89503 Ketopantoate hydroxymethyltransferase PanB
1 1 SCOP 89624 Ribose/Galactose isomerase RpiB/AlsB
1 1 SCOP 89629 tRNA(m1G37)-methyltransferase TrmD
1 1 SCOP 89632 YggJ C-terminal domain-like
1 1 SCOP 89863 PhzC/PhzF-like
1 1 SCOP 89902 PaaI/YdiI-like
1 1 SCOP 100921 Heat shock protein 70kD (HSP70), peptide-binding domain
1 1 SCOP 101021 N-terminal domain of Bacillus PurR
1 1 SCOP 101117 Flagellar export chaperone FliS
1 1 SCOP 101354 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 SCOP 101458 TENA/THI-4
1 1 SCOP 101474 DhaL-like
1 1 SCOP 101698 Hypothetical protein YfhH
1 1 SCOP 101802 Surface presentation of antigens (SPOA)
1 1 SCOP 101844 MOSC (MOCO sulphurase C-terminal) domain
1 1 SCOP 101884 Glycosyl hydrolases family 32 N-terminal domain
1 1 SCOP 101951 Pectate transeliminase
1 1 SCOP 102115 Biotin synthase
1 1 SCOP 102118 Oxygen-independent coproporphyrinogen III oxidase HemN
1 1 SCOP 102189 AmyC N-terminal domain-like
1 1 SCOP 102317 NagD-like
1 1 SCOP 102485 Putative Holliday junction resolvase RuvX
1 1 SCOP 102547 RbsD-like
1 1 SCOP 102575 NOL1/NOP2/sun
1 1 SCOP 102581 (Uracil-5-)-methyltransferase
1 1 SCOP 102589 LmbE-like
1 1 SCOP 102623 Carboxylesterase/lipase
1 1 SCOP 102646 CoaB-like
1 1 SCOP 102656 PdxA-like
1 1 SCOP 102660 PlsX-like
1 1 SCOP 102663 Phosphotransacetylase
1 1 SCOP 102706 NIF3 (NGG1p interacting factor 3)-like
1 1 SCOP 102755 Hsp90 middle domain
1 1 SCOP 102769 ATP-dependent protease Lon (La), catalytic domain
1 1 SCOP 102772 YigZ N-terminal domain-like
1 1 SCOP 103011 Galactokinase
1 1 SCOP 103026 Aminomethyltransferase folate-binding domain
1 1 SCOP 103040 CheC-like
1 1 SCOP 103264 Chorismate synthase, AroC
1 1 SCOP 103366 Hypothetical protein PH1602
1 1 SCOP 103379 2-methylcitrate dehydratase PrpD
1 1 SCOP 109699 Transcriptional regulator Rrf2
1 1 SCOP 109706 YlxM/p13-like
1 1 SCOP 109756 PhoU-like
1 1 SCOP 109855 YfiT-like putative metal-dependent hydrolases
1 1 SCOP 109953 Glycosyl Hydrolase Family 88
1 1 SCOP 110309 Serine acetyltransferase
1 1 SCOP 110318 KduI-like
1 1 SCOP 110388 MoCo biosynthesis proteins
1 1 SCOP 110400 ThiG-like
1 1 SCOP 110486 ThuA-like
1 1 SCOP 110520 Methenyltetrahydrofolate synthetase
1 1 SCOP 110671 UbiE/COQ5-like
1 1 SCOP 110711 Hypothetical protein TT1679
1 1 SCOP 110734 Glycosyl transferases group 1
1 1 SCOP 110739 Glycerate kinase I
1 1 SCOP 110902 FabZ-like
1 1 SCOP 110965 Chlorite dismutase-like
1 1 SCOP 111039 YjbQ-like
1 1 SCOP 111065 Hut operon positive regulatory protein HutP
1 1 SCOP 111168 AHSA1 domain
1 1 SCOP 111219 ArgJ-like
1 1 SCOP 111222 Bacterial S-adenosylmethionine decarboxylase
1 1 SCOP 111233 YfcE-like
1 1 SCOP 111238 YfiH-like
1 1 SCOP 111305 Recombination protein RecR
1 1 SCOP 111327 Urocanase
1 1 SCOP 111353 Ammonium transporter
1 1 SCOP 116993 MazG-like
1 1 SCOP 117139 YicI N-terminal domain-like
1 1 SCOP 117397 TM1631-like
1 1 SCOP 117449 LamB/YcsF-like
1 1 SCOP 117458 FumA C-terminal domain-like
1 1 SCOP 117474 WrbA-like
1 1 SCOP 117558 Type II thymidine kinase
1 1 SCOP 117631 RecU-like
1 1 SCOP 117783 YbjQ-like
1 1 SCOP 117888 Ribosomal protein L16p
1 1 SCOP 117917 NifU C-terminal domain-like
1 1 SCOP 118216 Proton glutamate symport protein
1 1 SCOP 140292 CodY HTH domain
1 1 SCOP 140304 HxlR-like
1 1 SCOP 140603 DinB-like
1 1 SCOP 140757 GatB/GatE C-terminal domain-like
1 1 SCOP 140780 TyrA dimerization domain-like
1 1 SCOP 140991 FtsH protease domain-like
1 1 SCOP 141001 Glu-tRNAGln amidotransferase C subunit
1 1 SCOP 141092 Ribosomal protein L21p
1 1 SCOP 141131 Acetamidase/Formamidase-like
1 1 SCOP 141161 Beta-D-xylosidase C-terminal domain-like
1 1 SCOP 141245 Ribosomal protein L19
1 1 SCOP 141331 AraA C-terminal domain-like
1 1 SCOP 141368 UbiD middle domain-like
1 1 SCOP 141458 BH3618-like
1 1 SCOP 141735 HisI-like
1 1 SCOP 141755 PdxS-like
1 1 SCOP 141869 EAL domain
1 1 SCOP 141968 Divergent polysaccharide deacetylase
1 1 SCOP 142077 HTS-like
1 1 SCOP 142093 ThiI-like
1 1 SCOP 142332 Atu3015-like
1 1 SCOP 142339 CofD-like
1 1 SCOP 142606 N-6 DNA Methylase-like
1 1 SCOP 142611 YhhF-like
1 1 SCOP 142647 TrmB-like
1 1 SCOP 142696 RibA-like
1 1 SCOP 142701 RibD C-terminal domain-like
1 1 SCOP 142735 DeoB catalytic domain-like
1 1 SCOP 142755 NadA-like
1 1 SCOP 142760 AraA N-terminal and middle domain-like
1 1 SCOP 142765 YgbK-like
1 1 SCOP 142789 TM0189-like
1 1 SCOP 142914 YktB-like
1 1 SCOP 143129 BC1024-like
1 1 SCOP 143272 EthD-like
1 1 SCOP 143438 THUMP domain
1 1 SCOP 143473 UTRA domain
1 1 SCOP 143598 YojJ-like
1 1 SCOP 143732 YkuI C-terminal domain-like
1 1 SCOP 143812 GatB/GatE catalytic domain-like
1 1 SCOP 143857 DeoB insert domain-like
1 1 SCOP 143906 Gamma-glutamyltranspeptidase-like
1 1 SCOP 143916 RNase Z-like
1 1 SCOP 143924 YhfI-like
1 1 SCOP 143976 lvD/EDD N-terminal domain-like
1 1 SCOP 158505 BH2638-like
1 1 SCOP 158600 MgsA/YrvN C-terminal domain-like
1 1 SCOP 158623 YmcA-like
1 1 SCOP 158626 YheA-like
1 1 SCOP 158695 UraD-like
1 1 SCOP 158737 CPF0428-like
1 1 SCOP 158833 Tex N-terminal region-like
1 1 SCOP 159112 RNB domain-like
1 1 SCOP 159216 BPHL domain
1 1 SCOP 159249 PH0987 C-terminal domain-like
1 1 SCOP 159400 Imidazolonepropionase-like
1 1 SCOP 159436 HI0933 N-terminal domain-like
1 1 SCOP 159441 YdjC-like
1 1 SCOP 159579 YpsA-like
1 1 SCOP 159584 PTS system, Fructose specific IIB subunit-like
1 1 SCOP 159618 DhaM-like
1 1 SCOP 159635 Tex RuvX-like domain-like
1 1 SCOP 159775 YerB-like
1 1 SCOP 159889 YdhG-like
1 1 SCOP 160252 Iojap/YbeB-like
1 1 SCOP 160257 AadK N-terminal domain-like
1 1 SCOP 160260 GrpB-like
1 1 SCOP 160370 Ribosomal protein L10-like
1 1 SCOP 160425 BH3703-like
1 1 SCOP 160538 SpoVG-like
1 1 SCOP 160644 EF1021-like
1 1 SCOP 160756 YugN-like
1 1 SCOP 160883 CheD-like
1 1 SCOP 160984 Diacylglycerol kinase-like
1 1 SCOP 160997 HI0933 insert domain-like

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The following families have one or more weak hits:

SCOP family Cation efflux protein transmembrane domain-like
SCOP family CV3147-like
SCOP family MalF N-terminal region-like
SCOP family SPO2555-like
SCOP family EF1021 C-terminal domain-like
SCOP family EscU C-terminal domain-like
SCOP family YueI-like
SCOP family PH0987 N-terminal domain-like
SCOP family BLRF2-like
SCOP family Smr domain
SCOP family NIL domain-like
SCOP family YiiL-like
SCOP family Cation efflux protein cytoplasmic domain-like
SCOP family FlaG-like
SCOP family PepSY-like
SCOP family FdhD/NarQ
SCOP family EreA-like
SCOP family YxiM C-terminal domain-like
SCOP family DRTGG domain
SCOP family Zn-dependent arginine carboxypeptidase-like
SCOP family Imidazolonepropionase-like
SCOP family FomD-like
SCOP family MLTA-like
SCOP family AlaX-M N-terminal domain-like
SCOP family YxiM N-terminal domain-like
SCOP family PUD-like
SCOP family NEAT domain
SCOP family MgtE N-terminal domain-like
SCOP family LanC-like
SCOP family AadK C-terminal domain-like
SCOP family Cas Cmr5-like
SCOP family Tex HhH-containing domain-like
SCOP family DnaD domain
SCOP family HAMP domain
SCOP family DsbB-like
SCOP family TM1646-like
SCOP family RpiR-like
SCOP family YznC-like
SCOP family Sec2 N-terminal region
SCOP family Ribosomal protein L33p
SCOP family Ribosomal protein L32p
SCOP family Rhomboid-like
SCOP family UbiD C-terminal domain-like
SCOP family Sulfatase-modifying factor-like
SCOP family beta-CASP RNA-metabolising hydrolases
SCOP family Pce catalytic domain-like
SCOP family YwmB-like
SCOP family Ribosomal protein L31p
SCOP family Ribosomal protein L28
SCOP family PPK middle domain-like
SCOP family SerA intervening domain-like
SCOP family Serine dehydratase beta chain-like
SCOP family TRCF domain
SCOP family TTP0101/SSO1404-like
SCOP family Transposase IS200-like
SCOP family Aspartokinase allosteric domain-like
SCOP family IlvH-like
SCOP family SP1160 C-terminal domain-like
SCOP family Ribosomal protein L35p
SCOP family Nqo1 middle domain-like
SCOP family NlpC/P60
SCOP family CoaX-like
SCOP family CinA-like
SCOP family YkgG-like
SCOP family LD-carboxypeptidase A N-terminal domain-like
SCOP family IlvD/EDD C-terminal domain-like
SCOP family LON domain-like
SCOP family Pentapeptide repeats
SCOP family PTSIIA/GutA-like
SCOP family L,D-transpeptidase catalytic domain-like
SCOP family RimM C-terminal domain-like
SCOP family NfeD domain-like
SCOP family CarD-like
SCOP family Kinase-associated protein B-like
SCOP family HisE-like (PRA-PH)
SCOP family Ppx associated domain
SCOP family TTHA0068-like
SCOP family FlgN-like
SCOP family TM0693-like
SCOP family BAS1536-like
SCOP family ESAT-6 like
SCOP family MW0975(SA0943)-like
SCOP family YppE-like
SCOP family EF2458-like
SCOP family PPK N-terminal domain-like
SCOP family FtsK C-terminal domain-like
SCOP family HSP33 redox switch-like
SCOP family Type II thymidine kinase zinc finger
SCOP family DNA mismatch repair protein MutL
SCOP family TM1457-like
SCOP family PaaD-like
SCOP family Band 7/SPFH domain
SCOP family CAC2371-like
SCOP family YuzD-like
SCOP family ProFAR isomerase associated domain
SCOP family Probable transcriptional regulator VC1968, C-terminal domain
SCOP family Putative glucosidase YicI, domain 3
SCOP family Flagellar hook protein flgE
SCOP family CsrA-like
SCOP family Putative glucosidase YicI, C-terminal domain
SCOP family ProC C-terminal domain-like
SCOP family Probable transcriptional regulator VC1968, N-terminal domain
SCOP family TrmE connector domain
SCOP family XseB-like
SCOP family PadR-like
SCOP family ScpB/YpuH-like
SCOP family Hypothetical protein PH1932
SCOP family TrkA C-terminal domain-like
SCOP family NAD kinase-like
SCOP family Putative modulator of DNA gyrase, PmbA/TldD
SCOP family HrcA C-terminal domain-like
SCOP family Sporulation related repeat
SCOP family HSP90 C-terminal domain
SCOP family 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
SCOP family 3-demethylubiquinone-9 3-methyltransferase
SCOP family Gamma-glutamyl cyclotransferase-like
SCOP family ParB-like nuclease domain
SCOP family Hypothetical protein SAV1430
SCOP family CbiX-like
SCOP family YeaZ-like
SCOP family Ppx/GppA phosphatase
SCOP family YjjX-like
SCOP family Toprim domain
SCOP family GlpP-like
SCOP family Outer surface protein, N-terminal domain
SCOP family Hypothetical protein EF3133
SCOP family Ribosomal L27 protein
SCOP family Outer surface protein, C-terminal domain
SCOP family TF C-terminus
SCOP family RmsB N-terminal domain-like
SCOP family Phosphoserine phosphatase RsbU, N-terminal domain
SCOP family Conserved carboxylase domain
SCOP family KorB DNA-binding domain-like
SCOP family Heat-inducible transcription repressor HrcA, N-terminal domain
SCOP family ClpX chaperone zinc binding domain
SCOP family Preprotein translocase SecY subunit
SCOP family Multidrug resistance efflux transporter EmrE
SCOP family LacY-like proton/sugar symporter
SCOP family Hypothetical protein TM0207
SCOP family Lysine biosynthesis enzyme LysX ATP-binding domain
SCOP family MutY C-terminal domain-like
SCOP family Sensory domain of two-component sensor kinase
SCOP family Predicted metal-dependent hydrolase
SCOP family OmpA-like
SCOP family Hypothetical protein TT1725
SCOP family PG130-like
SCOP family Hypothetical protein Ta1206
SCOP family Cell division protein ZapA-like
SCOP family Imidazole glycerol phosphate dehydratase
SCOP family Obg GTP-binding protein C-terminal domain
SCOP family Trigger factor ribosome-binding domain
SCOP family JAB1/MPN domain
SCOP family Ribosomal protein L11 methyltransferase PrmA
SCOP family Creatininase
SCOP family Putative cyclase
SCOP family Transcriptional repressor Rex, C-terminal domain
SCOP family Hypothetical protein MraZ
SCOP family Peptidoglycan hydrolase LytM
SCOP family Adhesin YadA, collagen-binding domain
SCOP family Stabilizer of iron transporter SufD
SCOP family Hypothetical protein YwiB
SCOP family Aminomethyltransferase beta-barrel domain
SCOP family MTH1895
SCOP family TRAM domain
SCOP family Glycosyl hydrolases family 32 C-terminal domain
SCOP family Anti-sigma factor FlgM
SCOP family PBS lyase HEAT-like repeat
SCOP family AmyC C-terminal domain-like
SCOP family FUR-like
SCOP family Transcriptional repressor Rex, N-terminal domain
SCOP family Sporulation inhibitor Sda
SCOP family Isochorismatase-like hydrolases
SCOP family Heat shock protein 70kD (HSP70), C-terminal subdomain
SCOP family Lesion bypass DNA polymerase (Y-family), little finger domain
SCOP family Myosin rod fragments
SCOP family Hypothetical protein YjiA, C-terminal domain
SCOP family 2'-5' RNA ligase LigT
SCOP family YajQ-like
SCOP family MTH1187-like
SCOP family Ribosome-binding factor A, RbfA
SCOP family N5-glutamine methyltransferase, HemK
SCOP family NADPH-dependent FMN reductase
SCOP family RraA-like
SCOP family PHP domain
SCOP family Glycerophosphoryl diester phosphodiesterase
SCOP family YggJ N-terminal domain-like
SCOP family Kis/PemI addiction antidote
SCOP family HesB-like domain
SCOP family Collagen-binding domain
SCOP family Antibiotic binding domain of TipA-like multidrug resistance regulators
SCOP family LysR-like transcriptional regulators
SCOP family Pyruvate oxidase and decarboxylase PP module
SCOP family alpha-mannosidase
SCOP family alpha-mannosidase, domain 2
SCOP family Sigma4 domain
SCOP family Sigma3 domain
SCOP family Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
SCOP family Mechanosensitive channel protein MscS (YggB), transmembrane region
SCOP family MesJ substrate recognition domain-like
SCOP family GIY-YIG endonuclease
SCOP family alpha-D-glucuronidase, N-terminal domain
SCOP family Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
SCOP family R3H domain
SCOP family Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
SCOP family Mechanosensitive channel protein MscS (YggB), C-terminal domain
SCOP family Poly A polymerase head domain-like
SCOP family YbaB-like
SCOP family Penicillin binding protein 2a (PBP2A), N-terminal domain
SCOP family Biotin biosynthesis protein BioH
SCOP family PP-loop ATPase
SCOP family A4 beta-galactosidase middle domain
SCOP family Proline dehydrohenase domain of bifunctional PutA protein
SCOP family ATP-dependent riboflavin kinase-like
SCOP family Mechanosensitive channel protein MscS (YggB), middle domain
SCOP family N-utilization substance G protein NusG, C-terminal domain
SCOP family Double Clp-N motif
SCOP family Mannitol 2-dehydrogenase
SCOP family Metal cation-transporting ATPase, ATP-binding domain N
SCOP family Calcium ATPase, transduction domain A
SCOP family a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
SCOP family Valyl-tRNA synthetase (ValRS) C-terminal domain
SCOP family C-terminal, Zn-finger domain of MutM-like DNA repair proteins
SCOP family Middle domain of MutM-like DNA repair proteins
SCOP family F1F0 ATP synthase subunit B, membrane domain
SCOP family Bacterial ba3 type cytochrome c oxidase subunit IIa
SCOP family Cytochrome c oxidase subunit II-like, transmembrane region
SCOP family F1F0 ATP synthase subunit A
SCOP family F1F0 ATP synthase subunit C
SCOP family Voltage-gated potassium channels
SCOP family DNA polymerase beta-like
SCOP family TGS domain
SCOP family Siroheme synthase middle domains-like
SCOP family Putative transcriptional regulator TM1602, C-terminal domain
SCOP family RNA 2'-O ribose methyltransferase substrate binding domain
SCOP family Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain
SCOP family Gyrase inhibitory protein GyrI (SbmC, YeeB)
SCOP family YhbC-like, N-terminal domain
SCOP family YjeE-like
SCOP family Siroheme synthase N-terminal domain-like
SCOP family YhbC-like, C-terminal domain
SCOP family Pleiotropic translational regulator Hfq
SCOP family Colicin E3 receptor domain
SCOP family Clc chloride channel
SCOP family Ribosome binding protein Y (YfiA homologue)
SCOP family Glutamyl tRNA-reductase catalytic, N-terminal domain
SCOP family Lrp/AsnC-like transcriptional regulator C-terminal domain
SCOP family Molybdenum cofactor biosynthesis protein MoeB
SCOP family Urease metallochaperone UreE, N-terminal domain
SCOP family RecG "wedge" domain
SCOP family PBP5 C-terminal domain-like
SCOP family Ketopantoate reductase PanE
SCOP family Glutamyl tRNA-reductase dimerization domain
SCOP family 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
SCOP family Lrp/AsnC-like transcriptional regulator N-terminal domain
SCOP family DNA double-strand break repair nuclease
SCOP family Holo-(acyl carrier protein) synthase ACPS
SCOP family Dimethylarginine dimethylaminohydrolase DDAH
SCOP family YlxR-like
SCOP family Methylmalonyl-CoA epimerase
SCOP family Manganese-dependent inorganic pyrophosphatase (family II)
SCOP family MoeA central domain-like
SCOP family Thiamin pyrophosphokinase, catalytic domain
SCOP family MoeA C-terminal domain-like
SCOP family Cell-division inhibitor MinC, C-terminal domain
SCOP family Chemotaxis protein CheA P1 domain
SCOP family TS-N domain
SCOP family MurE/MurF N-terminal domain
SCOP family Ferredoxin reductase FAD-binding domain-like
SCOP family Coiled-coil domain of nucleotide exchange factor GrpE
SCOP family Tropomyosin
SCOP family DnaJ/Hsp40 cysteine-rich domain
SCOP family Ada DNA repair protein, N-terminal domain (N-Ada 10)
SCOP family Ribosomal protein L36
SCOP family Ribosomal protein S14
SCOP family Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
SCOP family ADP-ribosylating toxins
SCOP family Nitrilase
SCOP family Protein serine/threonine phosphatase
SCOP family Glyoxalase II (hydroxyacylglutathione hydrolase)
SCOP family 4'-Phosphopantetheinyl transferase SFP
SCOP family Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
SCOP family CO dehydrogenase flavoprotein N-terminal domain-like
SCOP family FAD-linked oxidases, N-terminal domain
SCOP family ATP-dependent DNA ligase catalytic domain
SCOP family ATP-binding domain of peptide synthetases
SCOP family Nuclease
SCOP family DNA polymerase III, beta subunit
SCOP family Phosphoglucomutase, C-terminal domain
SCOP family Ornithine decarboxylase C-terminal domain
SCOP family YbaK/ProRS associated domain
SCOP family MutT-like
SCOP family PR-1-like
SCOP family Sterol carrier protein, SCP
SCOP family N-terminal domain of RNase HI
SCOP family Ribosomal protein L9 N-domain
SCOP family 6-pyruvoyl tetrahydropterin synthase
SCOP family Glucose permease domain IIB
SCOP family CO dehydrogenase flavoprotein C-terminal domain-like
SCOP family Glucose 6-phosphate dehydrogenase-like
SCOP family Homoserine dehydrogenase-like
SCOP family 4-oxalocrotonate tautomerase-like
SCOP family L30e/L7ae ribosomal proteins
SCOP family RNA polymerase alpha subunit dimerisation domain
SCOP family Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
SCOP family Multidrug-binding domain of transcription activator BmrR
SCOP family Ribosomal protein L30p/L7e
SCOP family Duplicated SiR/NiR-like domains 1 and 3
SCOP family Homoserine kinase
SCOP family CheY-binding domain of CheA
SCOP family Probable ACP-binding domain of malonyl-CoA ACP transacylase
SCOP family Bacterial exopeptidase dimerisation domain
SCOP family Phenylalanine metabolism regulatory domain
SCOP family HMA, heavy metal-associated domain
SCOP family Ribosomal protein S6
SCOP family Anticodon-binding domain of PheRS
SCOP family Acylphosphatase-like
SCOP family Subtilase propeptides/inhibitors
SCOP family GroEL-like chaperone, intermediate domain
SCOP family Eukaryotic type KH-domain (KH-domain type I)
SCOP family Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
SCOP family Double-stranded RNA-binding domain (dsRBD)
SCOP family RecA protein, C-terminal domain
SCOP family AbrB N-terminal domain-like
SCOP family Molybdopterin synthase subunit MoaE
SCOP family NadC N-terminal domain-like
SCOP family CO dehydrogenase molybdoprotein N-domain-like
SCOP family Antibiotic resistance proteins
SCOP family Ribosomal protein S16
SCOP family GreA transcript cleavage factor, C-terminal domain
SCOP family L-aminoacid/polyamine oxidase
SCOP family D-aminoacid oxidase-like
SCOP family Glutamine synthetase, N-terminal domain
SCOP family 2Fe-2S ferredoxin domains from multidomain proteins
SCOP family ThiS
SCOP family L23p
SCOP family Penicillin-binding protein 2x (pbp-2x), c-terminal domain
SCOP family LysM domain
SCOP family Arylamine N-acetyltransferase
SCOP family Bacterial muramidase, catalytic domain
SCOP family Periplasmic ferric siderophore binding protein FhuD
SCOP family Phosphoglucomutase, first 3 domains
SCOP family Aspartate/glutamate racemase
SCOP family Carbon-carbon bond hydrolase
SCOP family Molybdenum cofactor biosynthesis protein MobA
SCOP family Type II DNA methylase
SCOP family Chemotaxis receptor methyltransferase CheR, C-terminal domain
SCOP family COMT-like
SCOP family Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
SCOP family Cofactor-dependent phosphoglycerate mutase
SCOP family Folylpolyglutamate synthetase, C-terminal domain
SCOP family Methylated DNA-protein cysteine methyltransferase domain
SCOP family DNA repair protein MutS, domain II
SCOP family Creatinase/prolidase N-terminal domain
SCOP family gamma,delta resolvase, catalytic domain
SCOP family Leucine aminopeptidase (Aminopeptidase A), N-terminal domain
SCOP family Pyruvate kinase, C-terminal domain
SCOP family Thioltransferase
SCOP family Multidomain sulfurtransferase (rhodanese)
SCOP family PTS system, Lactose/Cellobiose specific IIB subunit
SCOP family PAPS sulfotransferase
SCOP family Adenosine-5'phosphosulfate kinase (APS kinase)
SCOP family Shikimate kinase (AroK)
SCOP family Pyruvate oxidase and decarboxylase, middle domain
SCOP family D-Alanine ligase N-terminal domain
SCOP family Universal stress protein-like
SCOP family UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
SCOP family PAPS reductase-like
SCOP family Flavohemoglobin, C-terminal domain
SCOP family Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain
SCOP family Formate/glycerate dehydrogenases, substrate-binding domain
SCOP family Beta-D-glucan exohydrolase, C-terminal domain
SCOP family Quinone reductase
SCOP family Cytochrome p450 reductase N-terminal domain-like
SCOP family Initiation factor IF2/eIF5b, domain 3
SCOP family DNA ligase
SCOP family PA domain
SCOP family N-terminal domain of enzyme I of the PEP:sugar phosphotransferase system
SCOP family MurCD N-terminal domain
SCOP family N-terminal domain of adrenodoxin reductase-like
SCOP family FAD-linked reductases, N-terminal domain
SCOP family Methylenetetrahydrofolate reductase
SCOP family Methyltetrahydrofolate-utiluzing methyltransferases
SCOP family Pyruvate phosphate dikinase, C-terminal domain
SCOP family "Hypothetical" protein ybl036c
SCOP family Epsilon subunit of F1F0-ATP synthase N-terminal domain
SCOP family Type 1 signal peptidase
SCOP family LexA-related
SCOP family Regulatory protein AraC
SCOP family cAMP-binding domain
SCOP family dTDP-sugar isomerase
SCOP family Head domain of nucleotide exchange factor GrpE
SCOP family Carbohydrate binding domain
SCOP family alpha-Amylases, C-terminal beta-sheet domain
SCOP family Soluble quinoprotein glucose dehydrogenase
SCOP family Cyclophilin (peptidylprolyl isomerase)
SCOP family Formate dehydrogenase/DMSO reductase, C-terminal domain
SCOP family Post formyltransferase domain
SCOP family NADH:FMN oxidoreductase-like
SCOP family ABC-transporter additional domain
SCOP family DNA ligase/mRNA capping enzyme postcatalytic domain
SCOP family Single strand DNA-binding domain, SSB
SCOP family DNA helicase RuvA subunit, N-terminal domain
SCOP family BglG-like antiterminator proteins
SCOP family eIF5a N-terminal domain-like
SCOP family Ribosomal proteins L24p and L21e
SCOP family SH3-domain
SCOP family Biotin repressor (BirA)
SCOP family Rieske iron-sulfur protein (ISP)
SCOP family beta-Galactosidase, domain 5
SCOP family FHA domain
SCOP family TNF-like
SCOP family HSP20
SCOP family Multidomain cupredoxins
SCOP family Periplasmic domain of cytochrome c oxidase subunit II
SCOP family HSP40/DnaJ peptide-binding domain
SCOP family Cna protein B-type domain
SCOP family Transthyretin (synonym: prealbumin)
SCOP family Invasin/intimin cell-adhesion fragments
SCOP family beta-Galactosidase/glucuronidase domain
SCOP family PKD domain
SCOP family Fibronectin type III
SCOP family Tetratricopeptide repeat (TPR)
SCOP family Ribosomal protein L7/12, oligomerisation (N-terminal) domain
SCOP family Trp repressor, TrpR
SCOP family HCDH C-domain-like
SCOP family Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
SCOP family R1 subunit of ribonucleotide reductase, N-terminal domain
SCOP family C-terminal domain of glutamyl-tRNA synthetase (GluRS)
SCOP family DNA repair glycosylase, 2 C-terminal domains
SCOP family Antitermination factor NusB
SCOP family GntR ligand-binding domain-like
SCOP family N-terminal domain of the delta subunit of the F1F0-ATP synthase
SCOP family Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
SCOP family lambda integrase-like, N-terminal domain
SCOP family 5' to 3' exonuclease, C-terminal subdomain
SCOP family DNA polymerase beta, N-terminal domain-like
SCOP family DNA helicase RuvA subunit, middle domain
SCOP family Chemotaxis receptor methyltransferase CheR, N-terminal domain
SCOP family CO dehydrogenase ISP C-domain like
SCOP family Methionine synthase domain
SCOP family GalR/LacI-like bacterial regulator
SCOP family SinR domain-like
SCOP family SinR repressor dimerisation domain-like
SCOP family Homodimeric domain of signal transducing histidine kinase
SCOP family Domain of the SRP/SRP receptor G-proteins
SCOP family Peptidoglycan binding domain, PGBD
SCOP family Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
SCOP family Ribosomal protein S20
SCOP family Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
SCOP family Enzyme IIa from lactose specific PTS, IIa-lac
SCOP family Spectrin repeat
SCOP family Domains B1 and B5 of PheRS-beta, PheT
SCOP family DNA helicase RuvA subunit, C-terminal domain
SCOP family Ribosomal protein S18
SCOP family GerE-like (LuxR/UhpA family of transcriptional regulators)
SCOP family PhoB-like
SCOP family Iron-dependent repressor protein
SCOP family Helicase DNA-binding domain
SCOP family GntR-like transcriptional regulators
SCOP family ArsR-like transcriptional regulators
SCOP family Biotin repressor-like
SCOP family Tetracyclin repressor-like, N-terminal domain
SCOP family AraC type transcriptional activator
SCOP family monodomain cytochrome c
SCOP family Epsilon subunit of F1F0-ATP synthase C-terminal domain
SCOP family C-terminal UvrC-binding domain of UvrB
SCOP family Phenylalanyl-tRNA synthetase (PheRS)
SCOP family Seryl-tRNA synthetase (SerRS)
SCOP family Chaperone J-domain
SCOP family Ribosomal protein L29 (L29p)
SCOP family GreA transcript cleavage protein, N-terminal domain
SCOP family Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.