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Mycoplasma wenyonii str. Massachusetts family assignments

Taxonomy
Taxonomy browser entry

Bacteria; Terrabacteria group; Tenericutes; Mollicutes; Mycoplasmatales; Mycoplasmataceae; Mycoplasma; Mycoplasma wenyonii; Mycoplasma wenyonii str. Massachusetts

Downloads
Fasta format sequences
Domain assignments


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Assignment statistics

Sequences: 652 total
278 (43 %) with assignment
285 average length
41 % amino acid coverage
Domains: 402 total
205 unique superfamilies
77 unique families
277 average length
2 average superfamily size
49 % formed by duplication
Domain combinations: 86 domain pairs
207 unique architectures

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Family assignments

Domains

Proteins

SCOP link

Families

8 8 SCOP 55682 Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
7 7 SCOP 52375 Class I aminoacyl-tRNA synthetases (RS), catalytic domain
3 3 SCOP 52652 Nitrogenase iron protein-like
3 3 SCOP 52670 RecA protein-like (ATPase-domain)
3 3 SCOP 52686 ABC transporter ATPase domain-like
3 3 SCOP 81269 Extended AAA-ATPase domain
3 3 SCOP 52592 G proteins
3 2 SCOP 81268 Tandem AAA-ATPase domain
2 2 SCOP 53168 Purine and uridine phosphorylases
2 1 SCOP 53068 Actin/HSP70
2 2 SCOP 64159 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
2 2 SCOP 50466 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
2 2 SCOP 50282 Cold shock DNA-binding domain-like
2 2 SCOP 50448 Elongation factors
1 1 SCOP 54981 EF-G/eEF-2 domains III and V
1 1 SCOP 75621 Release factor
1 1 SCOP 55178 Ribosomal protein S4
1 1 SCOP 55283 Ribosomal protein L5
1 1 SCOP 55348 GAPDH-like
1 1 SCOP 56096 Adenylation domain of NAD+-dependent DNA ligase
1 1 SCOP 56720 Type II DNA topoisomerase
1 1 SCOP 55879 DNA gyrase/MutL, N-terminal domain
1 1 SCOP 55921 Creatinase/aminopeptidase
1 1 SCOP 55974 S-adenosylmethionine synthetase
1 1 SCOP 56713 Prokaryotic type I DNA topoisomerase
1 1 SCOP 56809 Ribosomal protein L1
1 1 SCOP 64162 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, catalytic domain
1 1 SCOP 140991 FtsH protease domain-like
1 1 SCOP 117888 Ribosomal protein L16p
1 1 SCOP 102769 ATP-dependent protease Lon (La), catalytic domain
1 1 SCOP 101905 GyrA/ParC C-terminal domain-like
1 1 SCOP 101340 HD domain
1 1 SCOP 100921 Heat shock protein 70kD (HSP70), peptide-binding domain
1 1 SCOP 143812 GatB/GatE catalytic domain-like
1 1 SCOP 88947 Sigma2 domain of RNA polymerase sigma factors
1 1 SCOP 82267 TatD Mg-dependent DNase-like
1 1 SCOP 82052 Obg GTP-binding protein N-terminal domain
1 1 SCOP 75305 Amidase signature (AS) enzymes
1 1 SCOP 74732 Ribosomal protein L20
1 1 SCOP 64490 RNA-polymerase beta-prime
1 1 SCOP 64485 RNA-polymerase beta
1 1 SCOP 64186 HPr kinase HprK C-terminal domain
1 1 SCOP 142721 PyrH-like
1 1 SCOP 54827 Enolase N-terminal domain-like
1 1 SCOP 54822 Ribosomal protein S3 C-terminal domain
1 1 SCOP 51659 Endonuclease IV
1 1 SCOP 51622 Pyruvate kinase
1 1 SCOP 51605 Enolase
1 1 SCOP 51591 Class II FBP aldolase
1 1 SCOP 51413 Inosine monophosphate dehydrogenase (IMPDH)
1 1 SCOP 51352 Triosephosphate isomerase (TIM)
1 1 SCOP 50678 ValRS/IleRS/LeuRS editing domain
1 1 SCOP 50461 Ribosomal protein L3
1 1 SCOP 50325 Inorganic pyrophosphatase
1 1 SCOP 50194 Ribosomal protein L14
1 1 SCOP 50114 C-terminal domain of ribosomal protein L2
1 1 SCOP 48558 L-aspartase/fumarase
1 1 SCOP 47974 Ribosomal protein S7
1 1 SCOP 47918 C-terminal domain of alpha and beta subunits of F1 ATP synthase
1 1 SCOP 51800 Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
1 1 SCOP 52002 R1 subunit of ribonucleotide reductase, C-terminal domain
1 1 SCOP 52162 Ribosomal protein L13
1 1 SCOP 54811 GMP synthetase C-terminal dimerisation domain
1 1 SCOP 54212 Translational machinery components
1 1 SCOP 53785 Phosphofructokinase
1 1 SCOP 53749 Phosphoglycerate kinase
1 1 SCOP 53721 ALDH-like
1 1 SCOP 53701 Phosphoglucose isomerase, PGI
1 1 SCOP 53296 Phosphoribosylpyrophosphate synthetase-like
1 1 SCOP 53272 Phosphoribosyltransferases (PRTases)
1 1 SCOP 53201 Leucine aminopeptidase, C-terminal domain
1 1 SCOP 53138 Ribosomal protein L18 and S11
1 1 SCOP 52541 Nucleotide and nucleoside kinases
1 1 SCOP 52318 Class I glutamine amidotransferases (GAT)
1 1 SCOP 52314 Ribosomal protein S2
1 1 SCOP 52167 Ribosomal protein L4
1 1 SCOP 47253 Ribonucleotide reductase-like

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The following families have one or more weak hits:

SCOP family MetI-like
SCOP family MgtE membrane domain-like
SCOP family Ribosomal protein L10-like
SCOP family RNB domain-like
SCOP family MgtE N-terminal domain-like
SCOP family Ribosomal protein L33p
SCOP family Ribosomal protein L32p
SCOP family Type I restriction modification DNA specificity domain
SCOP family Ribosomal protein L31p
SCOP family Ribosomal protein L28
SCOP family YojJ-like
SCOP family Ribosomal protein L35p
SCOP family N-6 DNA Methylase-like
SCOP family LON domain-like
SCOP family Ribosomal protein L19
SCOP family Ribosomal protein L21p
SCOP family DR1281-like
SCOP family RecU-like
SCOP family Type II thymidine kinase
SCOP family TrkA C-terminal domain-like
SCOP family Flavoprotein NrdI
SCOP family Ribosomal L27 protein
SCOP family PhoU-like
SCOP family Heat-inducible transcription repressor HrcA, N-terminal domain
SCOP family Preprotein translocase SecY subunit
SCOP family NifU/IscU domain
SCOP family Hypothetical protein MraZ
SCOP family Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
SCOP family Heat shock protein 70kD (HSP70), C-terminal subdomain
SCOP family Ribosome-binding factor A, RbfA
SCOP family tRNA(m1G37)-methyltransferase TrmD
SCOP family NADPH-dependent FMN reductase
SCOP family rRNA adenine dimethylase-like
SCOP family Sigma4 domain
SCOP family Sigma3 domain
SCOP family N-utilization substance G protein NusG, N-terminal domain
SCOP family G domain-linked domain
SCOP family MraW-like putative methyltransferases
SCOP family Predicted hydrolases Cof
SCOP family Helical scaffold and wing domains of SecA
SCOP family Putative methyltransferase TM0872, insert domain
SCOP family Pre-protein crosslinking domain of SecA
SCOP family Chromosomal replication initiation factor DnaA C-terminal domain IV
SCOP family F1F0 ATP synthase subunit A
SCOP family F1F0 ATP synthase subunit C
SCOP family ABC transporter involved in vitamin B12 uptake, BtuC
SCOP family Pseudouridine synthase RsuA/RluD
SCOP family SpoU-like RNA 2'-O ribose methyltransferase
SCOP family HPr kinase/phoshatase HprK N-terminal domain
SCOP family Iron-containing alcohol dehydrogenase
SCOP family Transcription factor NusA, N-terminal domain
SCOP family C-terminal domain of ProRS
SCOP family Prokaryotic ribosomal protein L17
SCOP family Potassium channel NAD-binding domain
SCOP family DnaJ/Hsp40 cysteine-rich domain
SCOP family Ribosomal protein L36
SCOP family DNA primase zinc finger
SCOP family Ribosomal protein S14
SCOP family DNA primase DnaG catalytic core
SCOP family Insert subdomain of RNA polymerase alpha subunit
SCOP family Lactate & malate dehydrogenases, C-terminal domain
SCOP family Ribosomal protein L6
SCOP family Ribosomal protein S8
SCOP family Nuclease
SCOP family DNA polymerase III, beta subunit
SCOP family YrdC-like
SCOP family Glucose permease domain IIB
SCOP family HPr-like
SCOP family RNA polymerase alpha subunit dimerisation domain
SCOP family Translation initiation factor IF3, C-terminal domain
SCOP family Ribosome recycling factor, RRF
SCOP family Ribosomal protein S10
SCOP family Ribosomal protein S6
SCOP family Ribosomal protein L22
SCOP family Prokaryotic type KH domain (KH-domain type II)
SCOP family Ribosomal S5 protein, N-terminal domain
SCOP family RecA protein, C-terminal domain
SCOP family Ribosomal L11/L12e N-terminal domain
SCOP family Ribosomal protein L7/12, C-terminal domain
SCOP family Elongation factor Ts (EF-Ts), dimerisation domain
SCOP family CBS-domain pair
SCOP family Ribosomal protein S19
SCOP family Ribosomal protein S16
SCOP family GreA transcript cleavage factor, C-terminal domain
SCOP family Translation initiation factor IF3, N-terminal domain
SCOP family DNA gyrase/MutL, second domain
SCOP family RNase P protein
SCOP family HIT (HINT, histidine triad) family of protein kinase-interacting proteins
SCOP family L23p
SCOP family Phosphate binding protein-like
SCOP family Phosphoglucomutase, first 3 domains
SCOP family Cystathionine synthase-like
SCOP family Peptidyl-tRNA hydrolase-like
SCOP family DnaQ-like 3'-5' exonuclease
SCOP family Ribonuclease H
SCOP family Glycerol kinase
SCOP family 5' to 3' exonuclease catalytic domain
SCOP family Anticodon-binding domain of Class II aaRS
SCOP family ATP synthase (F1-ATPase), gamma subunit
SCOP family Thioltransferase
SCOP family N-type ATP pyrophosphatases
SCOP family Adenylyltransferase
SCOP family Initiation factor IF2/eIF5b, domain 3
SCOP family DNA ligase
SCOP family Ribosomal proteins L15p and L18e
SCOP family N-terminal domain of enzyme I of the PEP:sugar phosphotransferase system
SCOP family FAD/NAD-linked reductases, N-terminal and central domains
SCOP family LDH N-terminal domain-like
SCOP family Pyruvate phosphate dikinase, C-terminal domain
SCOP family Aldo-keto reductases (NADP)
SCOP family Epsilon subunit of F1F0-ATP synthase N-terminal domain
SCOP family Glucose permease-like
SCOP family Head domain of nucleotide exchange factor GrpE
SCOP family Pyruvate kinase beta-barrel domain
SCOP family N-terminal domain of alpha and beta subunits of F1 ATP synthase
SCOP family DNA ligase/mRNA capping enzyme postcatalytic domain
SCOP family Single strand DNA-binding domain, SSB
SCOP family Anticodon-binding domain
SCOP family Ribosomal proteins L24p and L21e
SCOP family HSP40/DnaJ peptide-binding domain
SCOP family Ribosomal protein L7/12, oligomerisation (N-terminal) domain
SCOP family R1 subunit of ribonucleotide reductase, N-terminal domain
SCOP family C-terminal domain of glutamyl-tRNA synthetase (GluRS)
SCOP family N-terminal domain of DnaB helicase
SCOP family Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
SCOP family 5' to 3' exonuclease, C-terminal subdomain
SCOP family C-terminal domain of RNA polymerase alpha subunit
SCOP family NAD+-dependent DNA ligase, domain 3
SCOP family Prokaryotic DNA-bending protein
SCOP family Signal peptide-binding domain
SCOP family Domain of the SRP/SRP receptor G-proteins
SCOP family Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
SCOP family Ribosomal protein S15
SCOP family Ribosomal protein S20
SCOP family Ribosomal protein S13
SCOP family Ribosomal protein S18
SCOP family Ribosomal protein L11, C-terminal domain
SCOP family Seryl-tRNA synthetase (SerRS)
SCOP family Chaperone J-domain
SCOP family Ribosomal protein L29 (L29p)
SCOP family GreA transcript cleavage protein, N-terminal domain

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