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Methanoplanus petrolearius DSM 11571 superfamily assignments

Taxonomy
Taxonomy browser entry

Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae; Methanolacinia; Methanolacinia petrolearia; Methanolacinia petrolearia DSM 11571

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Fasta format sequences
Domain assignments


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Assignment statistics

Sequences: 2785 total
1709 (61 %) with assignment
297 average length
57 % amino acid coverage
Domains: 2433 total
576 unique superfamilies
305 unique families
278 average length
4.2 average superfamily size
76 % formed by duplication
Domain combinations: 332 domain pairs
835 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies

174 165 42 7 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
131 62 48 0 SCOP 55785 PYP-like sensor domain (PAS domain)
85 75 27 1 SCOP 46785 "Winged helix" DNA-binding domain
56 55 9 6 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
49 48 8 1 SCOP 102114 Radical SAM enzymes
46 46 34 2 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
44 43 22 8 SCOP 51735 NAD(P)-binding Rossmann-fold domains
43 13 11 0 SCOP 49299 PKD domain
32 32 21 2 SCOP 52172 CheY-like
30 29 14 0 SCOP 54862 4Fe-4S ferredoxins
29 29 4 3 SCOP 53807 "Helical backbone" metal receptor
23 23 5 0 SCOP 52218 Flavoproteins
22 17 5 3 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
22 22 2 6 SCOP 53383 PLP-dependent transferases
21 18 14 4 SCOP 50249 Nucleic acid-binding proteins
21 20 4 0 SCOP 103473 MFS general substrate transporter
20 20 9 1 SCOP 52402 Adenine nucleotide alpha hydrolases-like
20 16 13 0 SCOP 54631 CBS-domain pair
19 19 5 3 SCOP 53448 Nucleotide-diphospho-sugar transferases
18 18 9 1 SCOP 53850 Periplasmic binding protein-like II
17 11 6 0 SCOP 48452 TPR-like
16 15 12 4 SCOP 54211 Ribosomal protein S5 domain 2-like
16 15 6 0 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
15 15 4 1 SCOP 52317 Class I glutamine amidotransferase-like
14 13 3 1 SCOP 161098 MetI-like
14 13 7 2 SCOP 51905 FAD/NAD(P)-binding domain
14 14 7 0 SCOP 46548 alpha-helical ferredoxin
14 8 2 0 SCOP 82866 Multidrug efflux transporter AcrB transmembrane domain
14 11 8 1 SCOP 58104 Methyl-accepting chemotaxis protein (MCP) signaling domain
13 13 4 1 SCOP 52833 Thioredoxin-like
12 11 8 1 SCOP 56059 Glutathione synthetase ATP-binding domain-like
12 12 8 2 SCOP 52374 Nucleotidylyl transferase
12 12 5 3 SCOP 56281 Metallo-hydrolase/oxidoreductase
12 12 1 1 SCOP 81345 ABC transporter involved in vitamin B12 uptake, BtuC
12 9 3 0 SCOP 48371 ARM repeat
11 11 2 1 SCOP 53474 alpha/beta-Hydrolases
11 11 4 3 SCOP 51569 Aldolase
11 11 3 4 SCOP 51366 Ribulose-phoshate binding barrel
11 11 11 1 SCOP 55681 Class II aaRS and biotin synthetases
11 8 7 0 SCOP 55021 ACT-like
10 9 5 2 SCOP 51556 Metallo-dependent hydrolases
10 10 7 2 SCOP 56112 Protein kinase-like (PK-like)
10 10 4 0 SCOP 56784 HAD-like
10 10 5 0 SCOP 47413 lambda repressor-like DNA-binding domains
10 10 3 0 SCOP 81301 Nucleotidyltransferase
10 10 5 0 SCOP 50692 ADC-like
10 6 3 0 SCOP 51338 Composite domain of metallo-dependent hydrolases
10 7 6 0 SCOP 116726 TrkA C-terminal domain-like
9 9 5 0 SCOP 56300 Metallo-dependent phosphatases
9 6 6 2 SCOP 53067 Actin-like ATPase domain
9 9 2 1 SCOP 50475 FMN-binding split barrel
9 7 7 0 SCOP 55781 GAF domain-like
9 9 4 0 SCOP 50998 Quinoprotein alcohol dehydrogenase-like
8 8 2 0 SCOP 46689 Homeodomain-like
8 8 3 1 SCOP 56801 Acetyl-CoA synthetase-like
8 8 3 1 SCOP 109604 HD-domain/PDEase-like
8 5 4 0 SCOP 51126 Pectin lyase-like
8 8 7 2 SCOP 50447 Translation proteins
8 8 1 0 SCOP 143011 RelE-like
8 8 2 0 SCOP 50341 CheW-like
8 8 4 0 SCOP 53300 vWA-like
8 8 6 1 SCOP 88697 PUA domain-like
8 7 3 1 SCOP 56042 PurM C-terminal domain-like
8 7 3 1 SCOP 55326 PurM N-terminal domain-like
7 7 3 1 SCOP 53271 PRTase-like
7 6 4 1 SCOP 51161 Trimeric LpxA-like enzymes
7 6 2 1 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
7 7 4 1 SCOP 51395 FMN-linked oxidoreductases
7 7 4 2 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
7 7 4 0 SCOP 50182 Sm-like ribonucleoproteins
7 7 4 0 SCOP 54001 Cysteine proteinases
7 7 2 0 SCOP 51182 RmlC-like cupins
7 5 4 0 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
7 7 5 0 SCOP 57802 Rubredoxin-like
7 7 2 0 SCOP 82171 DPP6 N-terminal domain-like
7 7 1 0 SCOP 48498 Tetracyclin repressor-like, C-terminal domain
7 7 3 2 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
7 7 3 1 SCOP 53706 Formate dehydrogenase/DMSO reductase, domains 1-3
7 5 3 0 SCOP 49464 Carboxypeptidase regulatory domain-like
6 6 1 1 SCOP 57829 Zn-binding ribosomal proteins
6 6 1 1 SCOP 53790 Tetrapyrrole methylase
6 6 5 1 SCOP 64182 DHH phosphoesterases
6 6 2 3 SCOP 53633 Carbamate kinase-like
6 6 2 0 SCOP 56770 HydA/Nqo6-like
6 6 1 0 SCOP 143100 TTHA1013/TTHA0281-like
6 6 2 0 SCOP 89550 PHP domain-like
6 6 2 1 SCOP 54913 GlnB-like
6 6 2 1 SCOP 56762 HydB/Nqo4-like
6 6 3 0 SCOP 50037 C-terminal domain of transcriptional repressors
6 3 2 1 SCOP 56024 Phospholipase D/nuclease
6 6 2 0 SCOP 49452 Starch-binding domain-like
6 6 2 0 SCOP 52922 TK C-terminal domain-like
6 6 4 0 SCOP 158472 HAMP domain-like
6 4 3 1 SCOP 52210 Succinyl-CoA synthetase domains
6 6 2 1 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
6 6 2 2 SCOP 55088 Methyl-coenzyme M reductase subunits
6 4 2 0 SCOP 55945 TATA-box binding protein-like
5 5 2 2 SCOP 53613 Ribokinase-like
5 5 4 1 SCOP 50104 Translation proteins SH3-like domain
5 5 4 1 SCOP 53137 Translational machinery components
5 5 3 1 SCOP 47240 Ferritin-like
5 5 1 1 SCOP 51658 Xylose isomerase-like
5 4 3 1 SCOP 109755 PhoU-like
5 5 4 1 SCOP 88723 PIN domain-like
5 5 3 1 SCOP 54534 FKBP-like
5 5 5 1 SCOP 52954 Class II aaRS ABD-related
5 5 2 0 SCOP 69118 AhpD-like
5 5 3 1 SCOP 51998 PFL-like glycyl radical enzymes
5 5 3 0 SCOP 47598 Ribbon-helix-helix
5 5 4 1 SCOP 53218 Molybdenum cofactor biosynthesis proteins
5 5 2 0 SCOP 53323 Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
5 5 3 1 SCOP 52490 Tubulin nucleotide-binding domain-like
5 5 4 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
5 5 3 2 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
5 4 4 0 SCOP 143555 FwdE-like
4 4 2 1 SCOP 52141 Uracil-DNA glycosylase-like
4 4 2 1 SCOP 81606 PP2C-like
4 4 2 1 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
4 4 4 1 SCOP 55120 Pseudouridine synthase
4 4 2 1 SCOP 100950 NagB/RpiA/CoA transferase-like
4 4 2 3 SCOP 75217 alpha/beta knot
4 4 3 1 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
4 4 1 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
4 4 2 0 SCOP 48150 DNA-glycosylase
4 4 3 1 SCOP 55315 L30e-like
4 4 2 0 SCOP 55469 FMN-dependent nitroreductase-like
4 4 1 0 SCOP 54427 NTF2-like
4 4 4 0 SCOP 81324 Voltage-gated potassium channels
4 4 1 1 SCOP 118196 YaeB-like
4 4 2 2 SCOP 52016 LeuD/IlvD-like
4 4 3 2 SCOP 52467 DHS-like NAD/FAD-binding domain
4 4 1 0 SCOP 53163 HybD-like
4 2 1 0 SCOP 53901 Thiolase-like
4 4 3 0 SCOP 53146 Nitrogenase accessory factor-like
4 4 3 0 SCOP 63867 MoeA C-terminal domain-like
4 4 1 0 SCOP 69336 Alpha subunit of glutamate synthase, C-terminal domain
4 4 4 0 SCOP 69304 Tricorn protease N-terminal domain
4 4 2 0 SCOP 103190 Sensory domain-like
4 4 4 0 SCOP 47384 Homodimeric domain of signal transducing histidine kinase
4 4 3 1 SCOP 81665 Calcium ATPase, transmembrane domain M
4 3 3 1 SCOP 52440 PreATP-grasp domain
4 1 1 0 SCOP 51055 Carbohydrate binding domain
4 4 3 1 SCOP 63882 MoeA N-terminal region -like
4 4 3 0 SCOP 81653 Calcium ATPase, transduction domain A
4 4 1 1 SCOP 48081 Methyl-coenzyme M reductase alpha and beta chain C-terminal domain
4 2 1 1 SCOP 55112 Formylmethanofuran:tetrahydromethanopterin formyltransferase
3 3 2 2 SCOP 53927 Cytidine deaminase-like
3 3 1 1 SCOP 53697 SIS domain
3 3 3 1 SCOP 55920 Creatinase/aminopeptidase
3 3 1 1 SCOP 53597 Dihydrofolate reductase-like
3 3 1 1 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
3 3 3 1 SCOP 52980 Restriction endonuclease-like
3 3 1 1 SCOP 48557 L-aspartase-like
3 3 2 2 SCOP 55821 YrdC/RibB
3 3 1 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
3 3 1 2 SCOP 53720 ALDH-like
3 3 3 0 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
3 3 1 1 SCOP 51430 NAD(P)-linked oxidoreductase
3 2 2 1 SCOP 51445 (Trans)glycosidases
3 2 2 0 SCOP 49899 Concanavalin A-like lectins/glucanases
3 3 1 3 SCOP 55909 Pentein
3 3 3 2 SCOP 55931 Glutamine synthetase/guanido kinase
3 3 2 0 SCOP 143243 Nqo5-like
3 3 1 0 SCOP 52091 SpoIIaa-like
3 3 2 1 SCOP 51717 Dihydropteroate synthetase-like
3 2 2 0 SCOP 46955 Putative DNA-binding domain
3 3 2 0 SCOP 54909 Dimeric alpha+beta barrel
3 3 2 1 SCOP 52255 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
3 3 1 1 SCOP 111352 Ammonium transporter
3 3 2 0 SCOP 56349 DNA breaking-rejoining enzymes
3 3 1 0 SCOP 50118 Cell growth inhibitor/plasmid maintenance toxic component
3 3 2 0 SCOP 161111 Cation efflux protein transmembrane domain-like
3 3 2 0 SCOP 54786 YcfA/nrd intein domain
3 2 2 1 SCOP 53822 Periplasmic binding protein-like I
3 3 1 0 SCOP 49879 SMAD/FHA domain
3 3 2 1 SCOP 56219 DNase I-like
3 3 2 0 SCOP 82689 Mechanosensitive channel protein MscS (YggB), C-terminal domain
3 2 2 0 SCOP 89095 GatB/YqeY motif
3 3 1 0 SCOP 103481 Multidrug resistance efflux transporter EmrE
3 3 2 0 SCOP 103196 Roadblock/LC7 domain
3 3 2 0 SCOP 50331 MOP-like
3 3 1 0 SCOP 103039 CheC-like
3 3 1 1 SCOP 56574 Serpins
3 3 1 0 SCOP 90123 ABC transporter transmembrane region
3 2 2 0 SCOP 54980 EF-G C-terminal domain-like
3 3 1 1 SCOP 53671 Aspartate/ornithine carbamoyltransferase
3 3 2 0 SCOP 47979 Iron-dependent repressor protein, dimerization domain
3 3 2 0 SCOP 160240 Cation efflux protein cytoplasmic domain-like
3 2 2 0 SCOP 47794 Rad51 N-terminal domain-like
3 3 2 0 SCOP 82861 Mechanosensitive channel protein MscS (YggB), transmembrane region
3 3 2 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
3 1 1 0 SCOP 53738 Phosphoglucomutase, first 3 domains
2 2 1 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
2 2 1 1 SCOP 52080 Ribosomal proteins L15p and L18e
2 2 2 0 SCOP 46946 S13-like H2TH domain
2 2 1 0 SCOP 89447 AbrB/MazE/MraZ-like
2 2 2 1 SCOP 53098 Ribonuclease H-like
2 1 1 0 SCOP 52821 Rhodanese/Cell cycle control phosphatase
2 2 1 1 SCOP 111283 Putative modulator of DNA gyrase, PmbA/TldD
2 2 1 1 SCOP 51283 dUTPase-like
2 2 2 1 SCOP 51713 tRNA-guanine transglycosylase
2 2 2 0 SCOP 54292 2Fe-2S ferredoxin-like
2 2 1 1 SCOP 64005 Undecaprenyl diphosphate synthase
2 2 1 0 SCOP 54637 Thioesterase/thiol ester dehydrase-isomerase
2 2 1 1 SCOP 56655 Carbohydrate phosphatase
2 2 1 0 SCOP 102705 NIF3 (NGG1p interacting factor 3)-like
2 2 2 0 SCOP 64307 SirA-like
2 2 1 0 SCOP 52121 Lumazine synthase
2 2 2 0 SCOP 75169 DsrEFH-like
2 2 1 1 SCOP 56796 Dehydroquinate synthase-like
2 2 2 1 SCOP 51419 PLP-binding barrel
2 2 2 1 SCOP 53187 Zn-dependent exopeptidases
2 2 2 0 SCOP 49764 HSP20-like chaperones
2 2 2 0 SCOP 63829 Calcium-dependent phosphotriesterase
2 2 2 2 SCOP 56672 DNA/RNA polymerases
2 2 2 0 SCOP 51726 UROD/MetE-like
2 2 1 0 SCOP 46579 Prefoldin
2 2 1 0 SCOP 63393 RNA polymerase subunits
2 2 1 0 SCOP 55144 LigT-like
2 1 1 0 SCOP 54506 Diaminopimelate epimerase-like
2 2 2 0 SCOP 56317 Carbon-nitrogen hydrolase
2 2 1 1 SCOP 53639 AraD/HMP-PK domain-like
2 2 2 0 SCOP 111126 Ligand-binding domain in the NO signalling and Golgi transport
2 1 1 0 SCOP 53032 tRNA-intron endonuclease catalytic domain-like
2 2 2 0 SCOP 55257 RBP11-like subunits of RNA polymerase
2 1 1 0 SCOP 55008 HMA, heavy metal-associated domain
2 2 2 1 SCOP 52283 Formate/glycerate dehydrogenase catalytic domain-like
2 2 1 1 SCOP 52788 Phosphotyrosine protein phosphatases I
2 2 1 0 SCOP 53800 Chelatase
2 2 2 0 SCOP 57662 Ferredoxin thioredoxin reductase (FTR), catalytic beta chain
2 2 1 0 SCOP 101478 ADP-ribosylglycohydrolase
2 2 1 0 SCOP 141571 Pentapeptide repeat-like
2 2 2 0 SCOP 50494 Trypsin-like serine proteases
2 2 2 0 SCOP 57783 Zinc beta-ribbon
2 2 1 0 SCOP 56209 Nitrile hydratase alpha chain
2 2 1 1 SCOP 51679 Bacterial luciferase-like
2 2 2 1 SCOP 52507 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
2 2 1 1 SCOP 53732 Aconitase iron-sulfur domain
2 1 1 0 SCOP 116734 DNA methylase specificity domain
2 2 2 0 SCOP 54975 Acylphosphatase/BLUF domain-like
2 2 1 0 SCOP 50969 YVTN repeat-like/Quinoprotein amine dehydrogenase
2 2 1 1 SCOP 56747 Prim-pol domain
2 2 2 1 SCOP 52335 Methylglyoxal synthase-like
2 2 1 1 SCOP 144010 CofE-like
2 2 1 0 SCOP 158622 YheA/YmcA-like
2 2 1 1 SCOP 142338 CofD-like
2 2 1 0 SCOP 159659 Cgl1923-like
2 2 2 0 SCOP 46565 Chaperone J-domain
2 2 1 0 SCOP 50346 PRC-barrel domain
2 2 1 1 SCOP 111321 AF1104-like
2 1 1 0 SCOP 158372 AF1782-like
2 1 1 0 SCOP 52777 CoA-dependent acyltransferases
2 2 1 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
2 2 2 0 SCOP 52343 Ferredoxin reductase-like, C-terminal NADP-linked domain
2 2 1 0 SCOP 52743 Subtilisin-like
2 2 1 1 SCOP 143865 CorA soluble domain-like
2 2 1 1 SCOP 48592 GroEL equatorial domain-like
2 2 1 1 SCOP 51690 Nicotinate/Quinolinate PRTase C-terminal domain-like
2 2 2 1 SCOP 51246 Rudiment single hybrid motif
2 2 1 0 SCOP 56176 FAD-binding/transporter-associated domain-like
2 2 2 0 SCOP 63825 YWTD domain
2 2 2 0 SCOP 56014 Nitrite and sulphite reductase 4Fe-4S domain-like
2 2 1 0 SCOP 48019 post-AAA+ oligomerization domain-like
2 2 2 1 SCOP 56719 Type II DNA topoisomerase
2 2 1 0 SCOP 140371 Vng1086c-like
2 2 2 0 SCOP 51971 Nucleotide-binding domain
2 2 2 1 SCOP 55816 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
2 1 1 0 SCOP 53681 Aspartate/glutamate racemase
2 2 2 0 SCOP 49373 Invasin/intimin cell-adhesion fragments
2 2 2 1 SCOP 52418 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
2 1 1 0 SCOP 161093 MgtE membrane domain-like
2 2 1 1 SCOP 55307 Tubulin C-terminal domain-like
2 2 2 1 SCOP 50621 Alanine racemase C-terminal domain-like
2 1 1 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
2 2 1 0 SCOP 48726 Immunoglobulin
2 2 1 1 SCOP 52029 GroEL apical domain-like
2 2 1 0 SCOP 55060 GHMP Kinase, C-terminal domain
2 2 2 0 SCOP 63380 Riboflavin synthase domain-like
2 2 2 0 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
2 2 2 0 SCOP 46600 C-terminal UvrC-binding domain of UvrB
2 2 1 0 SCOP 144083 Magnesium transport protein CorA, transmembrane region
2 2 2 0 SCOP 47648 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
2 2 1 1 SCOP 56327 LDH C-terminal domain-like
2 2 1 0 SCOP 110921 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
2 1 1 1 SCOP 47954 Cyclin-like
2 1 1 1 SCOP 56053 Ribosomal protein L6
2 2 2 0 SCOP 55124 Nitrite/Sulfite reductase N-terminal domain-like
2 2 1 0 SCOP 54675 Nicotinate/Quinolinate PRTase N-terminal domain-like
2 2 1 0 SCOP 81271 TGS-like
2 1 1 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
2 2 2 0 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 1 0 SCOP 54849 GroEL-intermediate domain like
2 2 2 0 SCOP 88802 Pre-PUA domain
2 2 1 0 SCOP 54585 Cdc48 domain 2-like
2 1 1 0 SCOP 55052 CheY-binding domain of CheA
2 1 1 0 SCOP 55267 tRNA-intron endonuclease N-terminal domain-like
1 1 1 0 SCOP 56731 DNA primase core
1 1 1 1 SCOP 81338 Aquaporin-like
1 1 1 0 SCOP 53167 Purine and uridine phosphorylases
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 1 SCOP 75304 Amidase signature (AS) enzymes
1 1 1 0 SCOP 143597 YojJ-like
1 1 1 1 SCOP 111331 NAD kinase/diacylglycerol kinase-like
1 1 1 0 SCOP 54197 HIT-like
1 1 1 0 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54570 Ribosomal protein S19
1 1 1 1 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 1 SCOP 55282 RL5-like
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 1 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 0 SCOP 55831 Thymidylate synthase/dCMP hydroxymethylase
1 1 1 1 SCOP 53748 Phosphoglycerate kinase
1 1 1 0 SCOP 55174 Alpha-L RNA-binding motif
1 1 1 1 SCOP 82649 SufE/NifU
1 1 1 0 SCOP 160369 Ribosomal protein L10-like
1 1 1 0 SCOP 81333 F1F0 ATP synthase subunit C
1 1 1 1 SCOP 55068 Peptide methionine sulfoxide reductase
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 0 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 1 SCOP 103263 Chorismate synthase, AroC
1 1 1 0 SCOP 50715 Ribosomal protein L25-like
1 1 1 0 SCOP 55811 Nudix
1 1 1 1 SCOP 51412 Inosine monophosphate dehydrogenase (IMPDH)
1 1 1 0 SCOP 56276 S-adenosylmethionine decarboxylase
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 0 SCOP 54285 MoaD/ThiS
1 1 1 0 SCOP 52096 ClpP/crotonase
1 1 1 1 SCOP 53254 Phosphoglycerate mutase-like
1 1 1 1 SCOP 55205 EPT/RTPC-like
1 1 1 1 SCOP 55298 YjgF-like
1 1 1 1 SCOP 48576 Terpenoid synthases
1 1 1 1 SCOP 55129 Ribosomal protein L30p/L7e
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 1 SCOP 56104 SAICAR synthase-like
1 1 1 0 SCOP 47113 Histone-fold
1 1 1 1 SCOP 48140 Ribosomal protein L19 (L19e)
1 1 1 1 SCOP 52042 Ribosomal protein L32e
1 1 1 0 SCOP 81296 E set domains
1 1 1 0 SCOP 54575 Ribosomal protein L31e
1 1 1 0 SCOP 47226 Histidine-containing phosphotransfer domain, HPT domain
1 1 1 0 SCOP 103456 Preprotein translocase SecE subunit
1 1 1 1 SCOP 50891 Cyclophilin-like
1 1 1 1 SCOP 53328 Formyltransferase
1 1 1 0 SCOP 53649 Alkaline phosphatase-like
1 1 1 1 SCOP 56322 ADC synthase
1 1 1 0 SCOP 52499 Isochorismatase-like hydrolases
1 1 1 0 SCOP 159468 AtpF-like
1 1 1 0 SCOP 55248 PCD-like
1 1 1 0 SCOP 144210 Nop10-like SnoRNP
1 1 1 0 SCOP 89895 FYSH domain
1 1 1 1 SCOP 53774 Glutaminase/Asparaginase
1 1 1 1 SCOP 56752 D-aminoacid aminotransferase-like PLP-dependent enzymes
1 1 1 0 SCOP 57997 Tropomyosin
1 1 1 0 SCOP 54928 RNA-binding domain, RBD
1 1 1 0 SCOP 51306 LexA/Signal peptidase
1 1 1 0 SCOP 47819 HRDC-like
1 1 1 0 SCOP 48662 Ribosomal protein L39e
1 1 1 1 SCOP 52972 ITPase-like
1 1 1 1 SCOP 54919 Nucleoside diphosphate kinase, NDK
1 1 1 0 SCOP 110849 ParB/Sulfiredoxin
1 1 1 0 SCOP 103486 V-type ATP synthase subunit C
1 1 1 0 SCOP 143870 PF0523-like
1 1 1 1 SCOP 53056 beta-carbonic anhydrase, cab
1 1 1 0 SCOP 64153 YjeF N-terminal domain-like
1 1 1 0 SCOP 55159 eIF1-like
1 1 1 0 SCOP 55418 eIF4e-like
1 1 1 0 SCOP 46924 RNA polymerase subunit RPB10
1 1 1 0 SCOP 69618 HemD-like
1 1 1 1 SCOP 143447 AMMECR1-like
1 1 1 1 SCOP 52768 Arginase/deacetylase
1 1 1 0 SCOP 63562 RPB6/omega subunit-like
1 1 1 1 SCOP 63965 Precorrin-8X methylmutase CbiC/CobH
1 1 1 0 SCOP 101960 Stabilizer of iron transporter SufD
1 1 1 0 SCOP 55620 Tetrahydrobiopterin biosynthesis enzymes-like
1 1 1 1 SCOP 141734 HisI-like
1 1 1 0 SCOP 81342 Transmembrane di-heme cytochromes
1 1 1 0 SCOP 111038 YjbQ-like
1 1 1 1 SCOP 55040 Molybdenum cofactor biosynthesis protein C, MoaC
1 1 1 0 SCOP 102405 MCP/YpsA-like
1 1 1 1 SCOP 102712 JAB1/MPN domain
1 1 1 0 SCOP 54593 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
1 1 1 1 SCOP 64438 CNF1/YfiH-like putative cysteine hydrolases
1 1 1 1 SCOP 142754 NadA-like
1 1 1 1 SCOP 56266 DmpA/ArgJ-like
1 1 1 0 SCOP 75712 Rad50 coiled-coil Zn hook
1 1 1 0 SCOP 82771 GIY-YIG endonuclease
1 1 1 0 SCOP 82697 PurS-like
1 1 1 0 SCOP 51230 Single hybrid motif
1 1 1 0 SCOP 46767 Methylated DNA-protein cysteine methyltransferase, C-terminal domain
1 1 1 0 SCOP 101744 Rof/RNase P subunit-like
1 1 1 1 SCOP 64167 SurE-like
1 1 1 0 SCOP 55154 CYTH-like phosphatases
1 1 1 1 SCOP 81340 Clc chloride channel
1 1 1 0 SCOP 54690 Molybdopterin synthase subunit MoaE
1 1 1 0 SCOP 141000 Glu-tRNAGln amidotransferase C subunit
1 1 1 0 SCOP 116842 XseB-like
1 1 1 1 SCOP 117856 AF0104/ALDC/Ptd012-like
1 1 1 1 SCOP 103365 Hypothetical protein PH1602
1 1 1 0 SCOP 52733 Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
1 1 1 0 SCOP 69065 RNase III domain-like
1 1 1 1 SCOP 143081 BB1717-like
1 1 1 0 SCOP 159245 AttH-like
1 1 1 0 SCOP 50952 Soluble quinoprotein glucose dehydrogenase
1 1 1 0 SCOP 160719 gpW/gp25-like
1 1 1 0 SCOP 158997 Trm112p-like
1 1 1 1 SCOP 51391 Thiamin phosphate synthase
1 1 1 1 SCOP 48173 Cryptochrome/photolyase FAD-binding domain
1 1 1 0 SCOP 52425 Cryptochrome/photolyase, N-terminal domain
1 1 1 0 SCOP 48600 Chorismate mutase II
1 1 1 0 SCOP 89392 Prokaryotic lipoproteins and lipoprotein localization factors
1 1 1 0 SCOP 159664 CobE/GbiG C-terminal domain-like
1 1 1 0 SCOP 101386 all-alpha NTP pyrophosphatases
1 1 1 0 SCOP 140478 LemA-like
1 1 1 0 SCOP 143631 ApbE-like
1 1 1 1 SCOP 56821 Prismane protein-like
1 1 1 0 SCOP 140683 SP0561-like
1 1 1 1 SCOP 117457 FumA C-terminal domain-like
1 1 1 0 SCOP 75138 HprK N-terminal domain-like
1 1 1 0 SCOP 64288 Chorismate lyase-like
1 1 1 0 SCOP 52242 Cobalamin (vitamin B12)-binding domain
1 1 1 1 SCOP 51219 TRAP-like
1 1 1 0 SCOP 69786 YggU-like
1 1 1 0 SCOP 117070 LEA14-like
1 1 1 0 SCOP 159127 HupF/HypC-like
1 1 1 0 SCOP 52309 N-(deoxy)ribosyltransferase-like
1 1 1 1 SCOP 51604 Enolase C-terminal domain-like
1 1 1 0 SCOP 75471 YhbY-like
1 1 1 0 SCOP 47781 RuvA domain 2-like
1 1 1 0 SCOP 48695 Multiheme cytochromes
1 1 1 0 SCOP 56271 Pyruvoyl-dependent histidine and arginine decarboxylases
1 1 1 1 SCOP 160104 Acetoacetate decarboxylase-like
1 1 1 1 SCOP 52738 Methylesterase CheB, C-terminal domain
1 1 1 0 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
1 1 1 0 SCOP 89562 RraA-like
1 1 1 1 SCOP 56726 DNA topoisomerase IV, alpha subunit
1 1 1 0 SCOP 159672 CbiG N-terminal domain-like
1 1 1 1 SCOP 102198 Putative cyclase
1 1 1 0 SCOP 82704 AlbA-like
1 1 1 0 SCOP 46950 Double-stranded DNA-binding domain
1 1 1 1 SCOP 89124 Nop domain
1 1 1 1 SCOP 142535 AF0625-like
1 1 1 0 SCOP 143560 MK0786-like
1 1 1 0 SCOP 158436 Ta0600-like
1 1 1 1 SCOP 160975 AF1531-like
1 1 1 0 SCOP 160350 Rnp2-like
1 1 1 0 SCOP 49367 Superoxide reductase-like
1 1 1 0 SCOP 54984 eEF-1beta-like
1 1 1 0 SCOP 55186 ThrRS/AlaRS common domain
1 1 1 0 SCOP 69819 MTH1598-like
1 1 1 0 SCOP 55287 RPB5-like RNA polymerase subunit
1 1 1 0 SCOP 102891 Hypothetical protein Ta1206
1 1 1 0 SCOP 143437 THUMP domain-like
1 1 1 0 SCOP 116820 Rps17e-like
1 1 1 0 SCOP 160374 RplX-like
1 1 1 1 SCOP 102462 Peptidyl-tRNA hydrolase II
1 1 1 0 SCOP 69695 SRP19
1 1 1 0 SCOP 101756 Hypothetical protein YgiW
1 1 1 0 SCOP 53092 Creatinase/prolidase N-terminal domain
1 1 1 1 SCOP 69864 Argininosuccinate synthetase, C-terminal domain
1 1 1 0 SCOP 46589 tRNA-binding arm
1 1 1 0 SCOP 50156 PDZ domain-like
1 1 1 0 SCOP 55979 DNA clamp
1 1 1 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
1 1 1 0 SCOP 52200 Toll/Interleukin receptor TIR domain
1 1 1 0 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
1 1 1 0 SCOP 69318 Integrin alpha N-terminal domain
1 1 1 0 SCOP 101898 NHL repeat
1 1 1 1 SCOP 159713 Dhaf3308-like
1 1 1 0 SCOP 161187 YfgJ-like
1 1 1 1 SCOP 82114 Riboflavin kinase-like
1 1 1 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 0 SCOP 102645 CoaB-like
1 1 1 0 SCOP 47188 Hemerythrin-like
1 1 1 0 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 1 SCOP 52935 PK C-terminal domain-like
1 1 1 0 SCOP 52009 Phosphohistidine domain
1 1 1 0 SCOP 118116 DNA mismatch repair protein MutL
1 1 1 1 SCOP 102324 F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)
1 1 1 1 SCOP 111342 CbiD-like
1 1 1 1 SCOP 56199 Methenyltetrahydromethanopterin cyclohydrolase
1 1 1 0 SCOP 49384 Carbohydrate-binding domain
1 1 1 0 SCOP 141066 ICP-like
1 1 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
1 1 1 0 SCOP 56037 PheT/TilS domain
1 1 1 0 SCOP 47090 PGBD-like
1 1 1 1 SCOP 48334 DNA repair protein MutS, domain III
1 1 1 0 SCOP 58014 Coiled-coil domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 63999 Thiamin pyrophosphokinase, catalytic domain
1 1 1 0 SCOP 51294 Hedgehog/intein (Hint) domain
1 1 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
1 1 1 0 SCOP 74853 Lamin A/C globular tail domain
1 1 1 0 SCOP 143968 UbiD C-terminal domain-like
1 1 1 0 SCOP 81585 PsbU/PolX domain-like
1 1 1 0 SCOP 52021 Carbamoyl phosphate synthetase, small subunit N-terminal domain
1 1 1 0 SCOP 89915 DNA-binding protein Tfx
1 1 1 1 SCOP 54826 Enolase N-terminal domain-like
1 1 1 1 SCOP 69025 Hypothetical protein MTH865
1 1 1 1 SCOP 75181 Hypothetical protein MTH777 (MT0777)
1 1 1 0 SCOP 53623 MurD-like peptide ligases, catalytic domain
1 1 1 1 SCOP 54810 GMP synthetase C-terminal dimerisation domain
1 1 1 0 SCOP 56425 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
1 1 1 1 SCOP 101904 GyrA/ParC C-terminal domain-like
1 1 1 0 SCOP 57825 Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
1 1 1 0 SCOP 81660 Metal cation-transporting ATPase, ATP-binding domain N
1 1 1 0 SCOP 143548 Serine metabolism enzymes domain
1 1 1 0 SCOP 46977 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
1 1 1 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
1 1 1 0 SCOP 141322 NfeD domain-like
1 1 1 0 SCOP 63446 Type I dockerin domain
1 1 1 0 SCOP 81631 PAP/OAS1 substrate-binding domain
1 1 1 0 SCOP 46934 UBA-like
1 1 1 0 SCOP 100879 Lesion bypass DNA polymerase (Y-family), little finger domain
1 1 1 0 SCOP 69075 Glutamyl tRNA-reductase dimerization domain
1 1 1 0 SCOP 75689 Zinc-binding domain of translation initiation factor 2 beta
1 1 1 0 SCOP 100966 Translation initiation factor 2 beta, aIF2beta, N-terminal domain
1 1 1 0 SCOP 54768 dsRNA-binding domain-like
1 1 1 1 SCOP 158702 Sec63 N-terminal domain-like
1 1 1 0 SCOP 101332 Hypothetical protein MTH393
1 1 1 0 SCOP 52413 UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
1 1 1 0 SCOP 117892 Band 7/SPFH domain
1 1 1 0 SCOP 100934 Heat shock protein 70kD (HSP70), C-terminal subdomain
1 1 1 0 SCOP 55957 Phosphoglucomutase, C-terminal domain
1 1 1 0 SCOP 54782 Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
1 1 1 0 SCOP 55031 Bacterial exopeptidase dimerisation domain
1 1 1 1 SCOP 143975 IlvD/EDD N-terminal domain-like
1 1 1 0 SCOP 54680 Pyrimidine nucleoside phosphorylase C-terminal domain
1 1 1 0 SCOP 55904 Ornithine decarboxylase C-terminal domain
1 1 1 1 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
1 1 1 1 SCOP 47446 Signal peptide-binding domain
1 1 1 0 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
1 1 1 1 SCOP 56542 Substrate-binding domain of HMG-CoA reductase
1 1 1 1 SCOP 55271 DNA repair protein MutS, domain I
1 1 1 0 SCOP 116742 eIF2alpha middle domain-like
1 1 1 0 SCOP 48108 Carbamoyl phosphate synthetase, large subunit connection domain
1 1 1 0 SCOP 55481 N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
1 1 1 0 SCOP 143724 PHP14-like
1 1 1 0 SCOP 88798 N-terminal, heterodimerisation domain of RBP7 (RpoE)
1 1 1 0 SCOP 54368 Glutamine synthetase, N-terminal domain
1 1 1 1 SCOP 55261 GAD domain-like
1 1 1 0 SCOP 47757 Chemotaxis receptor methyltransferase CheR, N-terminal domain
1 1 1 1 SCOP 51649 RuBisCo, C-terminal domain
1 1 1 0 SCOP 54966 RuBisCO, large subunit, small (N-terminal) domain
1 1 1 0 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 0 SCOP 117018 ATP-dependent DNA ligase DNA-binding domain
1 1 1 0 SCOP 69742 Glutamyl tRNA-reductase catalytic, N-terminal domain
1 1 1 0 SCOP 110993 eIF-2-alpha, C-terminal domain
1 1 1 0 SCOP 75553 Smc hinge domain
1 1 1 0 SCOP 75615 Siroheme synthase middle domains-like
1 1 1 0 SCOP 48168 R1 subunit of ribonucleotide reductase, N-terminal domain
1 1 1 0 SCOP 160527 V-type ATPase subunit E-like
1 1 1 0 SCOP 49309 Transglutaminase, two C-terminal domains
1 1 1 0 SCOP 159065 Dom34/Pelota N-terminal domain-like
1 1 1 1 SCOP 89000 post-HMGL domain-like
1 1 1 1 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 55003 PAP/Archaeal CCA-adding enzyme, C-terminal domain
1 1 1 0 SCOP 64586 C-terminal domain of ProRS
1 1 1 0 SCOP 51064 Head domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 55035 NAD-binding domain of HMG-CoA reductase
1 1 1 0 SCOP 75445 D-ribose-5-phosphate isomerase (RpiA), lid domain
1 1 1 0 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 0 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 0 SCOP 47644 Methionine synthase domain
1 1 1 1 SCOP 101821 Aminopeptidase/glucanase lid domain
1 1 1 1 SCOP 54893 Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain
1 1 1 0 SCOP 53150 DNA repair protein MutS, domain II
1 1 1 0 SCOP 140356 PPK N-terminal domain-like
1 1 1 1 SCOP 109728 Hypothetical protein AF0491, middle domain
1 1 1 0 SCOP 160996 HI0933 insert domain-like
1 1 1 0 SCOP 141300 GatD N-terminal domain-like
1 1 1 0 SCOP 140914 PriB N-terminal domain-like
1 1 1 0 SCOP 57770 Methionyl-tRNA synthetase (MetRS), Zn-domain

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The following superfamilies have one or more weak hits:

SCOP superfamily Myosin rod fragments
SCOP superfamily Fucose-specific lectin
SCOP superfamily Collagen-binding domain
SCOP superfamily Antibiotic binding domain of TipA-like multidrug resistance regulators
SCOP superfamily Receptor-binding domain of short tail fibre protein gp12
SCOP superfamily Sigma3 and sigma4 domains of RNA polymerase sigma factors
SCOP superfamily N-terminal domain of bifunctional PutA protein
SCOP superfamily Nucleotidyltransferase substrate binding subunit/domain
SCOP superfamily Cytochrome c oxidase subunit II-like, transmembrane region
SCOP superfamily Cytochrome c oxidase subunit I-like
SCOP superfamily F1F0 ATP synthase subunit A
SCOP superfamily Chemotaxis phosphatase CheZ
SCOP superfamily Monomethylamine methyltransferase MtmB
SCOP superfamily Arabinanase/levansucrase/invertase
SCOP superfamily C-terminal domain of PLC-beta
SCOP superfamily Activating enzymes of the ubiquitin-like proteins
SCOP superfamily Phage fibre proteins
SCOP superfamily Phage tail proteins
SCOP superfamily F1 ATPase inhibitor, IF1, C-terminal domain
SCOP superfamily Phase 1 flagellin
SCOP superfamily Cell-division inhibitor MinC, C-terminal domain
SCOP superfamily BAG domain
SCOP superfamily Apolipoprotein A-I
SCOP superfamily Bacterial hemolysins
SCOP superfamily Influenza hemagglutinin (stalk)
SCOP superfamily SNARE fusion complex
SCOP superfamily FYVE/PHD zinc finger
SCOP superfamily Cysteine-rich domain
SCOP superfamily RING/U-box
SCOP superfamily Hypothetical protein MTH1184
SCOP superfamily Outer membrane efflux proteins (OEP)
SCOP superfamily Porins
SCOP superfamily Diphtheria toxin, middle domain
SCOP superfamily Upper collar protein gp10 (connector protein)
SCOP superfamily ADP-ribosylation
SCOP superfamily Pili subunits
SCOP superfamily GFP-like
SCOP superfamily Cystatin/monellin
SCOP superfamily Staphylokinase/streptokinase
SCOP superfamily Prion-like
SCOP superfamily LigB-like
SCOP superfamily Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
SCOP superfamily Cobalamin (vitamin B12)-dependent enzymes
SCOP superfamily Peptidase/esterase 'gauge' domain
SCOP superfamily Sialidases
SCOP superfamily PH domain-like
SCOP superfamily Core binding factor beta, CBF
SCOP superfamily Actin-crosslinking proteins
SCOP superfamily Galactose-binding domain-like
SCOP superfamily Cupredoxins
SCOP superfamily Purple acid phosphatase, N-terminal domain
SCOP superfamily Clathrin adaptor appendage domain
SCOP superfamily Cu,Zn superoxide dismutase-like
SCOP superfamily beta-Galactosidase/glucuronidase domain
SCOP superfamily gene 59 helicase assembly protein
SCOP superfamily Protein prenylyltransferase
SCOP superfamily Aldehyde ferredoxin oxidoreductase, C-terminal domains
SCOP superfamily Di-copper centre-containing domain
SCOP superfamily FliG
SCOP superfamily Barrier-to-autointegration factor, BAF
SCOP superfamily PAH2 domain
SCOP superfamily EF-hand
SCOP superfamily 4-helical cytokines
SCOP superfamily PspA lactotransferrin-binding region
SCOP superfamily E6 C-terminal domain-like
SCOP superfamily SNF-like
SCOP superfamily YcgL-like
SCOP superfamily PrpR receptor domain-like
SCOP superfamily YerB-like
SCOP superfamily XCC0632-like
SCOP superfamily TerB-like
SCOP superfamily GINS helical bundle-like
SCOP superfamily Sec2 N-terminal region
SCOP superfamily TSP9-like
SCOP superfamily HIT/MYND zinc finger-like
SCOP superfamily NOB1 zinc finger-like
SCOP superfamily Rhomboid-like
SCOP superfamily FdhE-like
SCOP superfamily XisI-like
SCOP superfamily SARS receptor-binding domain-like
SCOP superfamily CinA-like
SCOP superfamily Allene oxide cyclase-like
SCOP superfamily Hcp1-like
SCOP superfamily FtsH protease domain-like
SCOP superfamily HP1531-like
SCOP superfamily MW0975(SA0943)-like
SCOP superfamily Flagellar hook protein flgE
SCOP superfamily Hypothetical protein PA1324
SCOP superfamily Coronavirus S2 glycoprotein
SCOP superfamily Resistin
SCOP superfamily Urocanase
SCOP superfamily Hemolytic lectin CEL-III, C-terminal domain
SCOP superfamily YggX-like
SCOP superfamily I/LWEQ domain
SCOP superfamily BAR/IMD domain-like
SCOP superfamily G protein-binding domain
SCOP superfamily Respiratory nitrate reductase 1 gamma chain
SCOP superfamily DNA-binding pseudobarrel domain
SCOP superfamily Formin homology 2 domain (FH2 domain)
SCOP superfamily Hsp90 co-chaperone CDC37
SCOP superfamily Methenyltetrahydrofolate cyclohydrolase-like
SCOP superfamily XPC-binding domain

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