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  Home > Genomes > Family assignments for Campylobacter jejuni RM1221


Campylobacter jejuni RM1221 family assignments

Taxonomy
Taxonomy browser entry

Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter; Campylobacter jejuni; Campylobacter jejuni RM1221

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Fasta format sequences
Domain assignments

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Assignment statistics

Sequences: 1838 total
1172 (64 %) with assignment
293 average length
61 % amino acid coverage
Domains: 1656 total
565 unique superfamilies
344 unique families
282 average length
2.9 average superfamily size
66 % formed by duplication
Domain combinations: 299 domain pairs
718 unique architectures

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Family assignments

Domains

Proteins

SCOP link

Families
20 20 SCOP 52686 ABC transporter ATPase domain-like
12 10 SCOP 81269 Extended AAA-ATPase domain
11 11 SCOP 53851 Phosphate binding protein-like
9 9 SCOP 51751 Tyrosine-dependent oxidoreductases
9 9 SCOP 52375 Class I aminoacyl-tRNA synthetases (RS), catalytic domain
9 9 SCOP 53417 GABA-aminotransferase-like
8 8 SCOP 55682 Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
7 5 SCOP 81268 Tandem AAA-ATPase domain
6 6 SCOP 52592 G proteins
6 6 SCOP 52670 RecA protein-like (ATPase-domain)
5 5 SCOP 48558 L-aspartase/fumarase
5 5 SCOP 52318 Class I glutamine amidotransferases (GAT)
5 4 SCOP 56067 BC ATP-binding domain-like
4 2 SCOP 46685 Di-heme cytochrome c peroxidase
4 3 SCOP 52441 BC N-terminal domain-like
4 4 SCOP 52652 Nitrogenase iron protein-like
4 2 SCOP 53068 Actin/HSP70
4 4 SCOP 53687 Tryptophan synthase beta subunit-like PLP-dependent enzymes
4 4 SCOP 56043 PurM C-terminal domain-like
4 2 SCOP 82867 Multidrug efflux transporter AcrB transmembrane domain
3 3 SCOP 50448 Elongation factors
3 3 SCOP 50678 ValRS/IleRS/LeuRS editing domain
3 3 SCOP 51367 Histidine biosynthesis enzymes
3 3 SCOP 51396 FMN-linked oxidoreductases
3 3 SCOP 51800 Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
3 3 SCOP 52403 N-type ATP pyrophosphatases
3 3 SCOP 53204 Bacterial dinuclear zinc exopeptidases
3 3 SCOP 53329 Formyltransferase
3 3 SCOP 53402 Cystathionine synthase-like
3 3 SCOP 53721 ALDH-like
3 3 SCOP 55327 PurM N-terminal domain-like
3 3 SCOP 55348 GAPDH-like
3 3 SCOP 56236 Class II glutamine amidotransferases
3 3 SCOP 56802 Acetyl-CoA synthetase-like
3 3 SCOP 118216 Proton glutamate symport protein
3 3 SCOP 142721 PyrH-like
3 3 SCOP 161071 SNF-like
2 2 SCOP 47241 Ferritin
2 2 SCOP 47918 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 SCOP 48577 Isoprenyl diphosphate synthases
2 2 SCOP 50282 Cold shock DNA-binding domain-like
2 2 SCOP 51247 BC C-terminal domain-like
2 2 SCOP 51381 Tryptophan biosynthesis enzymes
2 2 SCOP 51570 Class I aldolase
2 2 SCOP 51883 Aminoacid dehydrogenase-like, C-terminal domain
2 2 SCOP 51934 Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
2 2 SCOP 52211 Succinyl-CoA synthetase domains
2 2 SCOP 52901 Glutathione peroxidase-like
2 1 SCOP 53080 Acetokinase-like
2 2 SCOP 53099 Ribonuclease H
2 2 SCOP 53272 Phosphoribosyltransferases (PRTases)
2 2 SCOP 53384 AAT-like
2 2 SCOP 53672 Aspartate/ornithine carbamoyltransferase
2 2 SCOP 53707 Formate dehydrogenase/DMSO reductase, domains 1-3
2 2 SCOP 53733 Aconitase iron-sulfur domain
2 2 SCOP 53823 L-arabinose binding protein-like
2 1 SCOP 53902 Thiolase-related
2 2 SCOP 54212 Translational machinery components
2 1 SCOP 54981 EF-G/eEF-2 domains III and V
2 2 SCOP 55209 Enolpyruvate transferase, EPT
2 2 SCOP 55921 Creatinase/aminopeptidase
2 2 SCOP 56220 DNase I-like
2 2 SCOP 56323 ADC synthase
2 2 SCOP 56426 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
2 2 SCOP 56525 Oxidoreductase molybdopterin-binding domain
2 2 SCOP 56771 Nickel-iron hydrogenase, small subunit
2 2 SCOP 58105 Methyl-accepting chemotaxis protein (MCP) signaling domain
2 2 SCOP 64519 Phase 1 flagellin
2 2 SCOP 68901 Cytidylytransferase
2 2 SCOP 69599 mono-SIS domain
2 2 SCOP 75621 Release factor
2 2 SCOP 75648 ABC transporter involved in vitamin B12 uptake, BtuC
2 2 SCOP 89572 Biotin dependent carboxylase carboxyltransferase domain
2 2 SCOP 110368 NeuB-like
2 1 SCOP 110384 Cobalamin-independent methionine synthase
2 2 SCOP 142177 Histidinol phosphatase-like
2 1 SCOP 142484 CoaX-like
2 1 SCOP 143860 Polyphosphate kinase C-terminal domain
2 2 SCOP 161099 MetI-like
1 1 SCOP 46463 Globins
1 1 SCOP 46549 Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
1 1 SCOP 46610 Fe,Mn superoxide dismutase (SOD), N-terminal domain
1 1 SCOP 46947 Ribosomal protein S13
1 1 SCOP 46978 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
1 1 SCOP 47064 Ribosomal protein S15
1 1 SCOP 47253 Ribonucleotide reductase-like
1 1 SCOP 47324 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
1 1 SCOP 47730 Prokaryotic DNA-bending protein
1 1 SCOP 47974 Ribosomal protein S7
1 1 SCOP 48030 FliG
1 1 SCOP 48154 Mismatch glycosylase
1 1 SCOP 48169 R1 subunit of ribonucleotide reductase, N-terminal domain
1 1 SCOP 48184 Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI)
1 1 SCOP 48257 Citrate synthase
1 1 SCOP 48265 Cytochrome P450
1 1 SCOP 48593 GroEL chaperone, ATPase domain
1 1 SCOP 48711 Di-heme elbow motif
1 1 SCOP 50114 C-terminal domain of ribosomal protein L2
1 1 SCOP 50136 Alcohol dehydrogenase-like, N-terminal domain
1 1 SCOP 50194 Ribosomal protein L14
1 1 SCOP 50250 Anticodon-binding domain
1 1 SCOP 50277 Myf domain
1 1 SCOP 50325 Inorganic pyrophosphatase
1 1 SCOP 50461 Ribosomal protein L3
1 1 SCOP 50466 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
1 1 SCOP 50495 Prokaryotic proteases
1 1 SCOP 50693 Pyruvoyl dependent aspartate decarboxylase, ADC
1 1 SCOP 50696 Formate dehydrogenase/DMSO reductase, C-terminal domain
1 1 SCOP 51162 UDP N-acetylglucosamine acyltransferase
1 1 SCOP 51171 GlmU C-terminal domain-like
1 1 SCOP 51352 Triosephosphate isomerase (TIM)
1 1 SCOP 51372 D-ribulose-5-phosphate 3-epimerase
1 1 SCOP 51375 Decarboxylase
1 1 SCOP 51392 Thiamin phosphate synthase
1 1 SCOP 51413 Inosine monophosphate dehydrogenase (IMPDH)
1 1 SCOP 51420 Alanine racemase-like, N-terminal domain
1 1 SCOP 51591 Class II FBP aldolase
1 1 SCOP 51594 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
1 1 SCOP 51599 Class I DAHP synthetase
1 1 SCOP 51605 Enolase
1 1 SCOP 51622 Pyruvate kinase
1 1 SCOP 51691 NadC C-terminal domain-like
1 1 SCOP 51714 tRNA-guanine transglycosylase
1 1 SCOP 51718 Dihydropteroate synthetase
1 1 SCOP 51727 Uroporphyrinogen decarboxylase, UROD
1 1 SCOP 51731 Methylenetetrahydrofolate reductase
1 1 SCOP 51830 Formate/glycerate dehydrogenases, NAD-domain
1 1 SCOP 51868 6-phosphogluconate dehydrogenase-like, N-terminal domain
1 1 SCOP 51900 CoA-binding domain
1 1 SCOP 52002 R1 subunit of ribonucleotide reductase, C-terminal domain
1 1 SCOP 52017 LeuD-like
1 1 SCOP 52022 Carbamoyl phosphate synthetase, small subunit N-terminal domain
1 1 SCOP 52030 GroEL-like chaperone, apical domain
1 1 SCOP 52097 Clp protease, ClpP subunit
1 1 SCOP 52100 Tail specific protease, catalytic domain
1 1 SCOP 52122 Lumazine synthase
1 1 SCOP 52142 Uracil-DNA glycosylase
1 1 SCOP 52152 FabD-like
1 1 SCOP 52162 Ribosomal protein L13
1 1 SCOP 52167 Ribosomal protein L4
1 1 SCOP 52219 Flavodoxin-related
1 1 SCOP 52256 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
1 1 SCOP 52305 Type II 3-dehydroquinate dehydratase
1 1 SCOP 52314 Ribosomal protein S2
1 1 SCOP 52397 Adenylyltransferase
1 1 SCOP 52419 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
1 1 SCOP 52475 Pyruvate oxidase and decarboxylase, middle domain
1 1 SCOP 52491 Tubulin, GTPase domain
1 1 SCOP 52508 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
1 1 SCOP 52541 Nucleotide and nucleoside kinases
1 1 SCOP 52566 Shikimate kinase (AroK)
1 1 SCOP 52739 Methylesterase CheB, C-terminal domain
1 1 SCOP 52931 Pyruvate-ferredoxin oxidoreductase, PFOR, domain II
1 1 SCOP 52944 ATP synthase (F1-ATPase), gamma subunit
1 1 SCOP 52973 ITPase (Ham1)
1 1 SCOP 53045 5' to 3' exonuclease catalytic domain
1 1 SCOP 53057 beta-carbonic anhydrase, cab
1 1 SCOP 53118 DnaQ-like 3'-5' exonuclease
1 1 SCOP 53138 Ribosomal protein L18 and S11
1 1 SCOP 53168 Purine and uridine phosphorylases
1 1 SCOP 53179 Peptidyl-tRNA hydrolase-like
1 1 SCOP 53201 Leucine aminopeptidase, C-terminal domain
1 1 SCOP 53219 MogA-like
1 1 SCOP 53235 Tetrahydrofolate dehydrogenase/cyclohydrolase
1 1 SCOP 53240 Malic enzyme N-domain
1 1 SCOP 53296 Phosphoribosylpyrophosphate synthetase-like
1 1 SCOP 53324 Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
1 1 SCOP 53461 UDP-glucose pyrophosphorylase
1 1 SCOP 53620 Thiamin biosynthesis kinases
1 1 SCOP 53660 Dimeric isocitrate & isopropylmalate dehydrogenases
1 1 SCOP 53682 Aspartate/glutamate racemase
1 1 SCOP 53698 double-SIS domain
1 1 SCOP 53701 Phosphoglucose isomerase, PGI
1 1 SCOP 53739 Phosphoglucomutase, first 3 domains
1 1 SCOP 53749 Phosphoglycerate kinase
1 1 SCOP 53760 Peptidoglycan biosynthesis glycosyltransferase MurG
1 1 SCOP 53775 Glutaminase/Asparaginase
1 1 SCOP 53796 PEP carboxykinase C-terminal domain
1 1 SCOP 53801 Ferrochelatase
1 1 SCOP 53811 TroA-like
1 1 SCOP 53914 Chalcone synthase-like
1 1 SCOP 54224 DNA gyrase/MutL, second domain
1 1 SCOP 54229 Ribonuclease PH domain 1-like
1 1 SCOP 54312 2Fe-2S ferredoxin domains from multidomain proteins
1 1 SCOP 54365 Translation initiation factor IF3, N-terminal domain
1 1 SCOP 54571 Ribosomal protein S19
1 1 SCOP 54632 CBS-domain pair
1 1 SCOP 54720 Fe,Mn superoxide dismutase (SOD), C-terminal domain
1 1 SCOP 54737 Ribosomal protein L7/12, C-terminal domain
1 1 SCOP 54748 Ribosomal L11/L12e N-terminal domain
1 1 SCOP 54811 GMP synthetase C-terminal dimerisation domain
1 1 SCOP 54815 Prokaryotic type KH domain (KH-domain type II)
1 1 SCOP 54822 Ribosomal protein S3 C-terminal domain
1 1 SCOP 54827 Enolase N-terminal domain-like
1 1 SCOP 54920 Nucleoside diphosphate kinase, NDK
1 1 SCOP 55000 Ribosomal protein S10
1 1 SCOP 55041 Molybdenum cofactor biosynthesis protein C, MoaC
1 1 SCOP 55069 Peptide methionine sulfoxide reductase
1 1 SCOP 55178 Ribosomal protein S4
1 1 SCOP 55187 Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
1 1 SCOP 55195 Ribosome recycling factor, RRF
1 1 SCOP 55283 Ribosomal protein L5
1 1 SCOP 55299 YjgF/L-PSP
1 1 SCOP 55308 Tubulin, C-terminal domain
1 1 SCOP 55621 GTP cyclohydrolase I
1 1 SCOP 55875 Heat shock protein 90, HSP90, N-terminal domain
1 1 SCOP 55879 DNA gyrase/MutL, N-terminal domain
1 1 SCOP 55884 Histidine kinase
1 1 SCOP 55932 Glutamine synthetase catalytic domain
1 1 SCOP 55974 S-adenosylmethionine synthetase
1 1 SCOP 56048 Ribosomal protein S8
1 1 SCOP 56054 Ribosomal protein L6
1 1 SCOP 56081 Succinyl-CoA synthetase, beta-chain, N-terminal domain
1 1 SCOP 56096 Adenylation domain of NAD+-dependent DNA ligase
1 1 SCOP 56105 SAICAR synthase
1 1 SCOP 56251 Proteasome subunits
1 1 SCOP 56421 Peptide deformylase
1 1 SCOP 56530 FAH
1 1 SCOP 56602 beta-Lactamase/D-ala carboxypeptidase
1 1 SCOP 56635 Heme-dependent catalases
1 1 SCOP 56656 Inositol monophosphatase/fructose-1,6-bisphosphatase-like
1 1 SCOP 56673 DNA polymerase I
1 1 SCOP 56713 Prokaryotic type I DNA topoisomerase
1 1 SCOP 56720 Type II DNA topoisomerase
1 1 SCOP 56732 DNA primase DnaG catalytic core
1 1 SCOP 56753 D-aminoacid aminotransferase-like PLP-dependent enzymes
1 1 SCOP 56763 Nickel-iron hydrogenase, large subunit
1 1 SCOP 56797 Dehydroquinate synthase, DHQS
1 1 SCOP 56809 Ribosomal protein L1
1 1 SCOP 56910 Fumarate reductase respiratory complex cytochrome b subunit, FrdC
1 1 SCOP 56932 Outer membrane phospholipase A (OMPLA)
1 1 SCOP 56948 Ligand-gated protein channel
1 1 SCOP 56955 Outer membrane efflux proteins (OEP)
1 1 SCOP 63883 MoeA N-terminal region -like
1 1 SCOP 63893 Pyridoxine 5'-phosphate synthase
1 1 SCOP 63917 Dihydroorotase
1 1 SCOP 63971 Inosicase
1 1 SCOP 63976 Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
1 1 SCOP 63984 Sir2 family of transcriptional regulators
1 1 SCOP 64006 Undecaprenyl diphosphate synthase
1 1 SCOP 64159 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
1 1 SCOP 64162 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, catalytic domain
1 1 SCOP 64168 SurE-like
1 1 SCOP 64198 AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
1 1 SCOP 64264 Prokaryotic ribosomal protein L17
1 1 SCOP 64294 Autoinducer-2 production protein LuxS
1 1 SCOP 64372 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
1 1 SCOP 64485 RNA-polymerase beta
1 1 SCOP 64490 RNA-polymerase beta-prime
1 1 SCOP 64511 Phosphoserine phosphatase
1 1 SCOP 68924 PEP carboxykinase N-terminal domain
1 1 SCOP 69066 RNase III catalytic domain-like
1 1 SCOP 69337 Alpha subunit of glutamate synthase, C-terminal domain
1 1 SCOP 69560 Mycolic acid cyclopropane synthase
1 1 SCOP 69602 L-histidinol dehydrogenase HisD
1 1 SCOP 69766 IpsF-like
1 1 SCOP 69865 Argininosuccinate synthetase, C-terminal domain
1 1 SCOP 74732 Ribosomal protein L20
1 1 SCOP 74779 Aconitase B, N-terminal domain
1 1 SCOP 74983 Small protein B (SmpB)
1 1 SCOP 75218 SpoU-like RNA 2'-O ribose methyltransferase
1 1 SCOP 75297 N-acetyl-l-glutamate kinase
1 1 SCOP 75305 Amidase signature (AS) enzymes
1 1 SCOP 75323 Exonuclease RecJ
1 1 SCOP 75626 YebC-like
1 1 SCOP 81642 Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
1 1 SCOP 81768 Pre-protein crosslinking domain of SecA
1 1 SCOP 81887 Helical scaffold and wing domains of SecA
1 1 SCOP 81902 HCP-like
1 1 SCOP 82052 Obg GTP-binding protein N-terminal domain
1 1 SCOP 82267 TatD Mg-dependent DNase-like
1 1 SCOP 82526 Monomeric isocitrate dehydrogenase
1 1 SCOP 82583 G domain-linked domain
1 1 SCOP 88683 Eukaryotic ODC-like
1 1 SCOP 88724 Pyruvate oxidase and decarboxylase Pyr module
1 1 SCOP 88735 TK-like Pyr module
1 1 SCOP 88746 PFOR Pyr module
1 1 SCOP 88749 Pyruvate oxidase and decarboxylase PP module
1 1 SCOP 88760 TK-like PP module
1 1 SCOP 88771 PFOR PP module
1 1 SCOP 88851 ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain
1 1 SCOP 88852 SirA-like
1 1 SCOP 88947 Sigma2 domain of RNA polymerase sigma factors
1 1 SCOP 89494 HMGL-like
1 1 SCOP 89503 Ketopantoate hydroxymethyltransferase PanB
1 1 SCOP 89624 Ribose/Galactose isomerase RpiB/AlsB
1 1 SCOP 89629 tRNA(m1G37)-methyltransferase TrmD
1 1 SCOP 89827 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC
1 1 SCOP 90124 ABC transporter transmembrane region
1 1 SCOP 100921 Heat shock protein 70kD (HSP70), peptide-binding domain
1 1 SCOP 101340 HD domain
1 1 SCOP 101349 3-Methyladenine DNA glycosylase III (MagIII)
1 1 SCOP 101354 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 SCOP 101387 Type II deoxyuridine triphosphatase
1 1 SCOP 101875 YceI-like
1 1 SCOP 101905 GyrA/ParC C-terminal domain-like
1 1 SCOP 102115 Biotin synthase
1 1 SCOP 102118 Oxygen-independent coproporphyrinogen III oxidase HemN
1 1 SCOP 102406 MoCo carrier protein-like
1 1 SCOP 102517 N-acetylmuramoyl-L-alanine amidase-like
1 1 SCOP 102575 NOL1/NOP2/sun
1 1 SCOP 102656 PdxA-like
1 1 SCOP 102660 PlsX-like
1 1 SCOP 102663 Phosphotransacetylase
1 1 SCOP 102706 NIF3 (NGG1p interacting factor 3)-like
1 1 SCOP 102726 Endonuclease I
1 1 SCOP 102755 Hsp90 middle domain
1 1 SCOP 102769 ATP-dependent protease Lon (La), catalytic domain
1 1 SCOP 102945 RelA/SpoT domain
1 1 SCOP 103021 tRNA pseudouridine synthase TruD
1 1 SCOP 103264 Chorismate synthase, AroC
1 1 SCOP 110388 MoCo biosynthesis proteins
1 1 SCOP 110400 ThiG-like
1 1 SCOP 110902 FabZ-like
1 1 SCOP 111155 Porphyromonas-type peptidylarginine deiminase
1 1 SCOP 111305 Recombination protein RecR
1 1 SCOP 111338 QueA-like
1 1 SCOP 111370 HlyD-like secretion proteins
1 1 SCOP 116973 modified HD domain
1 1 SCOP 117449 LamB/YcsF-like
1 1 SCOP 117888 Ribosomal protein L16p
1 1 SCOP 140991 FtsH protease domain-like
1 1 SCOP 141245 Ribosomal protein L19
1 1 SCOP 141368 UbiD middle domain-like
1 1 SCOP 141819 PP1699/LP2961-like
1 1 SCOP 141840 Class-II DAHP synthetase
1 1 SCOP 142077 HTS-like
1 1 SCOP 142606 N-6 DNA Methylase-like
1 1 SCOP 142696 RibA-like
1 1 SCOP 143549 Serine dehydratase beta chain-like
1 1 SCOP 143711 LFTR-like
1 1 SCOP 143812 GatB/GatE catalytic domain-like
1 1 SCOP 143897 HP0184-like
1 1 SCOP 143976 lvD/EDD N-terminal domain-like
1 1 SCOP 143979 Type I restriction modification DNA specificity domain
1 1 SCOP 144028 Nqo4-like
1 1 SCOP 144031 Nq06-like
1 1 SCOP 158600 MgsA/YrvN C-terminal domain-like
1 1 SCOP 159112 RNB domain-like
1 1 SCOP 159249 PH0987 C-terminal domain-like
1 1 SCOP 159280 PglD-like
1 1 SCOP 159502 ChaN-like
1 1 SCOP 159832 PBP transglycosylase domain-like
1 1 SCOP 161112 Cation efflux protein transmembrane domain-like

Jump to [ Top of page · Assignment statistics ]


The following families have one or more weak hits:

SCOP family Gam-like
SCOP family CorC/HlyC domain-like
SCOP family gpW/gp25-like
SCOP family BT0923-like
SCOP family EscU C-terminal domain-like
SCOP family PH0987 N-terminal domain-like
SCOP family Smr domain
SCOP family Ribosomal protein L10-like
SCOP family HP0495-like
SCOP family NIL domain-like
SCOP family YiiL-like
SCOP family Iojap/YbeB-like
SCOP family Cation efflux protein cytoplasmic domain-like
SCOP family FlaG-like
SCOP family YiiX-like
SCOP family FdhD/NarQ
SCOP family Aminoglycoside 3-N-acetyltransferase-like
SCOP family XCC0632-like
SCOP family AlaX-M N-terminal domain-like
SCOP family HupF/HypC-like
SCOP family YopX-like
SCOP family MgtE N-terminal domain-like
SCOP family HP0242-like
SCOP family DsbB-like
SCOP family Ribosomal protein L33p
SCOP family Ribosomal protein L32p
SCOP family Rhomboid-like
SCOP family Magnesium transport protein CorA, transmembrane region
SCOP family UbiD C-terminal domain-like
SCOP family Glutathionylspermidine synthase ATP-binding domain-like
SCOP family CorA soluble domain-like
SCOP family Ribosomal protein L31p
SCOP family Ribosomal protein L28
SCOP family PPK middle domain-like
SCOP family SerA intervening domain-like
SCOP family TRCF domain
SCOP family TTP0101/SSO1404-like
SCOP family Aspartokinase allosteric domain-like
SCOP family IlvH-like
SCOP family Nqo5-like
SCOP family YefM-like
SCOP family Ribosomal protein L35p
SCOP family RelE-like
SCOP family NlpC/P60
SCOP family TrmB-like
SCOP family RPA4359-like
SCOP family YhhF-like
SCOP family CinA-like
SCOP family YkgG-like
SCOP family Glutathionylspermidine synthase substrate-binding domain-like
SCOP family IlvD/EDD C-terminal domain-like
SCOP family Divergent polysaccharide deacetylase
SCOP family HisI-like
SCOP family LON domain-like
SCOP family Pentapeptide repeats
SCOP family L,D-transpeptidase catalytic domain-like
SCOP family BH3618-like
SCOP family CarD-like
SCOP family PhnA-like
SCOP family Ribosomal protein L21p
SCOP family Glu-tRNAGln amidotransferase C subunit
SCOP family Fic-like
SCOP family HisE-like (PRA-PH)
SCOP family TyrA dimerization domain-like
SCOP family GatB/GatE C-terminal domain-like
SCOP family PPK N-terminal domain-like
SCOP family HxlR-like
SCOP family FtsK C-terminal domain-like
SCOP family TrmE formyl-THF-binding domain
SCOP family GGDEF domain
SCOP family PaaD-like
SCOP family NifU C-terminal domain-like
SCOP family Flagellar hook protein flgE
SCOP family CsrA-like
SCOP family ProC C-terminal domain-like
SCOP family XseB-like
SCOP family NAD kinase-like
SCOP family YfiH-like
SCOP family Methyl parathion hydrolase
SCOP family Sporulation related repeat
SCOP family HSP90 C-terminal domain
SCOP family 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
SCOP family ParB-like nuclease domain
SCOP family Glycosyl transferases group 1
SCOP family YeaZ-like
SCOP family Ppx/GppA phosphatase
SCOP family Methenyltetrahydrofolate synthetase
SCOP family Ribosomal L27 protein
SCOP family Serine acetyltransferase
SCOP family DR1885-like metal-binding protein
SCOP family TF C-terminus
SCOP family Conserved carboxylase domain
SCOP family Preprotein translocase SecY subunit
SCOP family Multidrug resistance efflux transporter EmrE
SCOP family LacY-like proton/sugar symporter
SCOP family 2-methylcitrate dehydratase PrpD
SCOP family Predicted metal-dependent hydrolase
SCOP family OmpA-like
SCOP family NifU/IscU domain
SCOP family YigZ N-terminal domain-like
SCOP family Imidazole glycerol phosphate dehydratase
SCOP family Trigger factor ribosome-binding domain
SCOP family CoaB-like
SCOP family (Uracil-5-)-methyltransferase
SCOP family Ribosomal protein L11 methyltransferase PrmA
SCOP family Putative Holliday junction resolvase RuvX
SCOP family NagD-like
SCOP family Peptidoglycan hydrolase LytM
SCOP family MOSC (MOCO sulphurase C-terminal) domain
SCOP family Surface presentation of antigens (SPOA)
SCOP family CMD-like
SCOP family TENA/THI-4
SCOP family YutG-like
SCOP family Flagellar export chaperone FliS
SCOP family FUR-like
SCOP family DsbA-like
SCOP family Isochorismatase-like hydrolases
SCOP family Heat shock protein 70kD (HSP70), C-terminal subdomain
SCOP family Myosin rod fragments
SCOP family YajQ-like
SCOP family Ribosome-binding factor A, RbfA
SCOP family PaaI/YdiI-like
SCOP family Deoxycytidylate deaminase-like
SCOP family ADP-heptose LPS heptosyltransferase II
SCOP family N5-glutamine methyltransferase, HemK
SCOP family YggJ C-terminal domain-like
SCOP family NodB-like polysaccharide deacetylase
SCOP family TM1287-like
SCOP family TorD-like
SCOP family GatB/YqeY domain
SCOP family N6 adenine-specific DNA methylase, DAM
SCOP family DNA methylase TaqI, N-terminal domain
SCOP family rRNA adenine dimethylase-like
SCOP family Alanine racemase
SCOP family Sigma4 domain
SCOP family Sigma3 domain
SCOP family Mechanosensitive channel protein MscS (YggB), transmembrane region
SCOP family GIY-YIG endonuclease
SCOP family Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
SCOP family PurS subunit of FGAM synthetase
SCOP family Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
SCOP family Mechanosensitive channel protein MscS (YggB), C-terminal domain
SCOP family N-utilization substance G protein NusG, N-terminal domain
SCOP family Poly A polymerase head domain-like
SCOP family Adaptor protein ClpS (YljA)
SCOP family YbaB-like
SCOP family MraW-like putative methyltransferases
SCOP family YbeA-like
SCOP family PP-loop ATPase
SCOP family Shikimate dehydrogenase-like
SCOP family Proline dehydrohenase domain of bifunctional PutA protein
SCOP family SAH/MTA deaminase-like
SCOP family ATP-dependent riboflavin kinase-like
SCOP family Mechanosensitive channel protein MscS (YggB), middle domain
SCOP family Kid/PemK
SCOP family N-utilization substance G protein NusG, C-terminal domain
SCOP family Double Clp-N motif
SCOP family Poly A polymerase C-terminal region-like
SCOP family Porin chaperone SurA, peptide-binding domain
SCOP family Putative methyltransferase TM0872, insert domain
SCOP family Chromosomal replication initiation factor DnaA C-terminal domain IV
SCOP family Meta-cation ATPase, catalytic domain P
SCOP family Calcium ATPase, transduction domain A
SCOP family a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
SCOP family Cytochrome c oxidase subunit I-like
SCOP family F1F0 ATP synthase subunit A
SCOP family F1F0 ATP synthase subunit C
SCOP family Molybdenum-containing oxidoreductases-like dimerisation domain
SCOP family Chemotaxis phosphatase CheZ
SCOP family Formate dehydrogenase N, cytochrome (gamma) subunit
SCOP family IclR ligand-binding domain-like
SCOP family Pseudouridine synthase RsuA/RluD
SCOP family YhbC-like, N-terminal domain
SCOP family YjeF C-terminal domain-like
SCOP family Glucose-inhibited division protein B (GidB)
SCOP family YjeE-like
SCOP family beta-Phosphoglucomutase-like
SCOP family Hydantoinase (dihydropyrimidinase), catalytic domain
SCOP family SelR domain
SCOP family YhbC-like, C-terminal domain
SCOP family HtrA-like serine proteases
SCOP family Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha)
SCOP family Thymidylate synthase-complementing protein Thy1
SCOP family Pseudouridine synthase II TruB
SCOP family Glutamyl tRNA-reductase catalytic, N-terminal domain
SCOP family Transcription factor NusA, N-terminal domain
SCOP family HemD-like
SCOP family Molybdenum cofactor biosynthesis protein MoeB
SCOP family Hypothetical protein HI0319 (YecO)
SCOP family ArsC-like
SCOP family Probable phosphatase YrbI
SCOP family Baseplate protein-like
SCOP family 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
SCOP family Rho termination factor, N-terminal domain
SCOP family Carbamilase
SCOP family Holo-(acyl carrier protein) synthase ACPS
SCOP family YjeF N-terminal domain-like
SCOP family MoeA central domain-like
SCOP family ATP sulfurylase catalytic domain
SCOP family Potassium channel NAD-binding domain
SCOP family MoeA C-terminal domain-like
SCOP family ATP sulfurylase N-terminal domain
SCOP family Riboflavin synthase
SCOP family Chemotaxis protein CheA P1 domain
SCOP family TS-N domain
SCOP family MPP-like
SCOP family Coiled-coil domain of nucleotide exchange factor GrpE
SCOP family DnaJ/Hsp40 cysteine-rich domain
SCOP family Ribosomal protein L36
SCOP family Rubredoxin
SCOP family DNA primase zinc finger
SCOP family Ribosomal protein S14
SCOP family Outer membrane protein
SCOP family Major capsid protein gp5
SCOP family Insert subdomain of RNA polymerase alpha subunit
SCOP family Penicillin binding protein dimerisation domain
SCOP family Lambda integrase-like, catalytic core
SCOP family Lactate & malate dehydrogenases, C-terminal domain
SCOP family Protein serine/threonine phosphatase
SCOP family Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
SCOP family FAD-linked oxidases, N-terminal domain
SCOP family ATP-binding domain of peptide synthetases
SCOP family B3/B4 domain of PheRS, PheT
SCOP family Nitrite and sulphite reductase 4Fe-4S domain-like
SCOP family DNA polymerase III, beta subunit
SCOP family Phosphoglucomutase, C-terminal domain
SCOP family YrdC-like
SCOP family MutT-like
SCOP family IIA domain of mannitol-specific and ntr phosphotransferase EII
SCOP family N-acetyl transferase, NAT
SCOP family Biotin holoenzyme synthetase
SCOP family Ribonuclease PH domain 2-like
SCOP family Ribosomal protein L9 N-domain
SCOP family Ribosomal protein L9 C-domain
SCOP family 6-pyruvoyl tetrahydropterin synthase
SCOP family NADH oxidase/flavin reductase
SCOP family Dihydrodipicolinate reductase-like
SCOP family Homoserine dehydrogenase-like
SCOP family GAD domain
SCOP family Translation initiation factor IF3, C-terminal domain
SCOP family Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
SCOP family Pseudouridine synthase I TruA
SCOP family 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
SCOP family Homoserine kinase
SCOP family Probable ACP-binding domain of malonyl-CoA ACP transacylase
SCOP family Bacterial exopeptidase dimerisation domain
SCOP family HMA, heavy metal-associated domain
SCOP family Ribosomal protein S6
SCOP family Anticodon-binding domain of PheRS
SCOP family Acylphosphatase-like
SCOP family Ferredoxin domains from multidomain proteins
SCOP family Short-chain ferredoxins
SCOP family GroEL-like chaperone, intermediate domain
SCOP family Ribosomal protein L22
SCOP family Eukaryotic type KH-domain (KH-domain type I)
SCOP family Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
SCOP family Ribosomal S5 protein, N-terminal domain
SCOP family Double-stranded RNA-binding domain (dsRBD)
SCOP family RecA protein, C-terminal domain
SCOP family Elongation factor Ts (EF-Ts), dimerisation domain
SCOP family Molybdopterin synthase subunit MoaE
SCOP family NadC N-terminal domain-like
SCOP family 4HBT-like
SCOP family Ribosomal protein S16
SCOP family GreA transcript cleavage factor, C-terminal domain
SCOP family FKBP immunophilin/proline isomerase
SCOP family Pilin
SCOP family Diaminopimelate epimerase
SCOP family Glutamine synthetase, N-terminal domain
SCOP family ThiS
SCOP family GHMP Kinase, N-terminal domain
SCOP family RNase P protein
SCOP family HIT (HINT, histidine triad) family of protein kinase-interacting proteins
SCOP family L23p
SCOP family LysM domain
SCOP family DNA/RNA non-specific endonuclease
SCOP family Bacterial muramidase, catalytic domain
SCOP family Tetrapyrrole methylase
SCOP family UDP-N-acetylglucosamine 2-epimerase
SCOP family AraD-like aldolase/epimerase
SCOP family Folylpolyglutamate synthetase
SCOP family MurCDEF
SCOP family Ribokinase-like
SCOP family Nucleoside hydrolase
SCOP family glucose-1-phosphate thymidylyltransferase
SCOP family Spore coat polysaccharide biosynthesis protein SpsA
SCOP family Type II DNA methylase
SCOP family Chemotaxis receptor methyltransferase CheR, C-terminal domain
SCOP family Protein-L-isoaspartyl O-methyltransferase
SCOP family MurCDEF C-terminal domain
SCOP family Hydrogenase maturating endopeptidase HybD
SCOP family RuvC resolvase
SCOP family Retroviral integrase, catalytic domain
SCOP family lambda exonuclease
SCOP family Maf-like
SCOP family Anticodon-binding domain of Class II aaRS
SCOP family Leucine aminopeptidase (Aminopeptidase A), N-terminal domain
SCOP family Pyruvate kinase, C-terminal domain
SCOP family Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
SCOP family Transketolase C-terminal domain-like
SCOP family Thioltransferase
SCOP family Low-molecular-weight phosphotyrosine protein phosphatases
SCOP family Subtilases
SCOP family Phosphoribulokinase/pantothenate kinase
SCOP family D-Alanine ligase N-terminal domain
SCOP family Cytidylyltransferase
SCOP family Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain
SCOP family DJ-1/PfpI
SCOP family Formate/glycerate dehydrogenases, substrate-binding domain
SCOP family Quinone reductase
SCOP family CheY-related
SCOP family Initiation factor IF2/eIF5b, domain 3
SCOP family Mug-like
SCOP family DNA ligase
SCOP family Anti-sigma factor antagonist SpoIIaa
SCOP family Ribosomal proteins L15p and L18e
SCOP family MurCD N-terminal domain
SCOP family N-terminal domain of adrenodoxin reductase-like
SCOP family FAD/NAD-linked reductases, N-terminal and central domains
SCOP family LDH N-terminal domain-like
SCOP family Alcohol dehydrogenase-like, C-terminal domain
SCOP family "Hypothetical" protein ybl036c
SCOP family Epsilon subunit of F1F0-ATP synthase N-terminal domain
SCOP family Type 1 signal peptidase
SCOP family LexA-related
SCOP family dUTPase-like
SCOP family AFP III-like domain
SCOP family Biotinyl/lipoyl-carrier proteins and domains
SCOP family cAMP-binding domain
SCOP family Penicillin synthase-like
SCOP family gamma-carbonic anhydrase-like
SCOP family Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
SCOP family Head domain of nucleotide exchange factor GrpE
SCOP family Cyclophilin (peptidylprolyl isomerase)
SCOP family Pyruvate kinase beta-barrel domain
SCOP family Ribosomal protein L25-like
SCOP family N-terminal domain of alpha and beta subunits of F1 ATP synthase
SCOP family Post formyltransferase domain
SCOP family PNP-oxidase like
SCOP family Ricin B-like
SCOP family CheW-like
SCOP family DNA ligase/mRNA capping enzyme postcatalytic domain
SCOP family Single strand DNA-binding domain, SSB
SCOP family DNA helicase RuvA subunit, N-terminal domain
SCOP family Staphylococcal nuclease
SCOP family GroES
SCOP family eIF5a N-terminal domain-like
SCOP family Ribosomal proteins L24p and L21e
SCOP family Rieske iron-sulfur protein (ISP)
SCOP family FHA domain
SCOP family Multidomain cupredoxins
SCOP family HSP40/DnaJ peptide-binding domain
SCOP family Transthyretin (synonym: prealbumin)
SCOP family Fibronectin type III
SCOP family Ankyrin repeat
SCOP family Ribosomal protein L7/12, oligomerisation (N-terminal) domain
SCOP family Glycerol-3-phosphate dehydrogenase
SCOP family C-terminal domain of glutamyl-tRNA synthetase (GluRS)
SCOP family Endonuclease III
SCOP family Carbamoyl phosphate synthetase, large subunit connection domain
SCOP family N-terminal domain of DnaB helicase
SCOP family Antitermination factor NusB
SCOP family N-terminal domain of the delta subunit of the F1F0-ATP synthase
SCOP family 5' to 3' exonuclease, C-terminal subdomain
SCOP family C-terminal domain of RNA polymerase alpha subunit
SCOP family NAD+-dependent DNA ligase, domain 3
SCOP family DNA helicase RuvA subunit, middle domain
SCOP family Chemotaxis receptor methyltransferase CheR, N-terminal domain
SCOP family Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
SCOP family Signal peptide-binding domain
SCOP family Homodimeric domain of signal transducing histidine kinase
SCOP family Domain of the SRP/SRP receptor G-proteins
SCOP family Acyl-carrier protein (ACP)
SCOP family Hemerythrin-like
SCOP family Ribosomal protein S20
SCOP family DNA-binding N-terminal domain of transcription activators
SCOP family Domains B1 and B5 of PheRS-beta, PheT
SCOP family DNA helicase RuvA subunit, C-terminal domain
SCOP family Ribosomal protein S18
SCOP family Ribosomal protein L11, C-terminal domain
SCOP family PhoB-like
SCOP family Helicase DNA-binding domain
SCOP family N-terminal domain of molybdate-dependent transcriptional regulator ModE
SCOP family Methylated DNA-protein cysteine methyltransferase, C-terminal domain
SCOP family Tetracyclin repressor-like, N-terminal domain
SCOP family AraC type transcriptional activator
SCOP family C-terminal UvrC-binding domain of UvrB
SCOP family Phenylalanyl-tRNA synthetase (PheRS)
SCOP family Chaperone J-domain
SCOP family Ribosomal protein L29 (L29p)
SCOP family GreA transcript cleavage protein, N-terminal domain
SCOP family Truncated hemoglobin

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.