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  Home > Genomes > Family assignments for Maribacter sp. HTCC2170


Maribacter sp. HTCC2170 family assignments

Taxonomy
Taxonomy browser entry

Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Maribacter; Maribacter sp. HTCC2170

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Fasta format sequences
Domain assignments

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Assignment statistics

Sequences: 3411 total
2310 (68 %) with assignment
343 average length
62 % amino acid coverage
Domains: 3386 total
663 unique superfamilies
443 unique families
313 average length
5.1 average superfamily size
80 % formed by duplication
Domain combinations: 476 domain pairs
1066 unique architectures

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Family assignments

Domains

Proteins

SCOP link

Families
24 24 SCOP 51751 Tyrosine-dependent oxidoreductases
17 17 SCOP 52686 ABC transporter ATPase domain-like
13 13 SCOP 52592 G proteins
13 13 SCOP 53417 GABA-aminotransferase-like
13 9 SCOP 81268 Tandem AAA-ATPase domain
12 10 SCOP 81269 Extended AAA-ATPase domain
10 10 SCOP 52375 Class I aminoacyl-tRNA synthetases (RS), catalytic domain
10 10 SCOP 53653 Arylsulfatase
10 10 SCOP 55682 Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
9 9 SCOP 53402 Cystathionine synthase-like
8 8 SCOP 51396 FMN-linked oxidoreductases
8 8 SCOP 53687 Tryptophan synthase beta subunit-like PLP-dependent enzymes
8 5 SCOP 89572 Biotin dependent carboxylase carboxyltransferase domain
6 6 SCOP 51431 Aldo-keto reductases (NADP)
6 6 SCOP 51570 Class I aldolase
6 6 SCOP 52318 Class I glutamine amidotransferases (GAT)
6 6 SCOP 52652 Nitrogenase iron protein-like
6 6 SCOP 53384 AAT-like
6 6 SCOP 53721 ALDH-like
5 5 SCOP 51800 Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
5 5 SCOP 53272 Phosphoribosyltransferases (PRTases)
5 5 SCOP 53823 L-arabinose binding protein-like
5 3 SCOP 53902 Thiolase-related
5 5 SCOP 55348 GAPDH-like
5 4 SCOP 56067 BC ATP-binding domain-like
5 5 SCOP 142721 PyrH-like
4 4 SCOP 49803 beta-Galactosidase/glucuronidase, N-terminal domain
4 4 SCOP 51487 beta-glycanases
4 4 SCOP 51830 Formate/glycerate dehydrogenases, NAD-domain
4 3 SCOP 52441 BC N-terminal domain-like
4 4 SCOP 52670 RecA protein-like (ATPase-domain)
4 4 SCOP 52901 Glutathione peroxidase-like
4 2 SCOP 53068 Actin/HSP70
4 4 SCOP 56646 Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
4 4 SCOP 102079 Putative alpha-L-fucosidase, catalytic domain
3 3 SCOP 47204 Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
3 3 SCOP 50282 Cold shock DNA-binding domain-like
3 3 SCOP 51553 NagZ-like
3 3 SCOP 51704 Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain
3 3 SCOP 51868 6-phosphogluconate dehydrogenase-like, N-terminal domain
3 3 SCOP 51883 Aminoacid dehydrogenase-like, C-terminal domain
3 3 SCOP 52100 Tail specific protease, catalytic domain
3 3 SCOP 52103 Crotonase-like
3 3 SCOP 52541 Nucleotide and nucleoside kinases
3 3 SCOP 52778 CAT-like
3 3 SCOP 53204 Bacterial dinuclear zinc exopeptidases
3 3 SCOP 53614 Ribokinase-like
3 3 SCOP 53707 Formate dehydrogenase/DMSO reductase, domains 1-3
3 3 SCOP 54212 Translational machinery components
3 3 SCOP 55363 Homoserine dehydrogenase-like
3 3 SCOP 55730 N-acetyl transferase, NAT
3 3 SCOP 55921 Creatinase/aminopeptidase
3 1 SCOP 55974 S-adenosylmethionine synthetase
3 3 SCOP 56236 Class II glutamine amidotransferases
3 3 SCOP 56530 FAH
3 3 SCOP 56602 beta-Lactamase/D-ala carboxypeptidase
3 3 SCOP 56802 Acetyl-CoA synthetase-like
3 3 SCOP 75218 SpoU-like RNA 2'-O ribose methyltransferase
3 3 SCOP 101340 HD domain
3 3 SCOP 102406 MoCo carrier protein-like
2 2 SCOP 47253 Ribonucleotide reductase-like
2 2 SCOP 47324 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
2 2 SCOP 47918 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 SCOP 48558 L-aspartase/fumarase
2 1 SCOP 49550 Multidomain cupredoxins
2 2 SCOP 50448 Elongation factors
2 2 SCOP 50476 PNP-oxidase like
2 2 SCOP 50678 ValRS/IleRS/LeuRS editing domain
2 2 SCOP 50892 Cyclophilin (peptidylprolyl isomerase)
2 2 SCOP 50940 Sialidases (neuraminidases)
2 2 SCOP 51231 Biotinyl/lipoyl-carrier proteins and domains
2 2 SCOP 51247 BC C-terminal domain-like
2 2 SCOP 51367 Histidine biosynthesis enzymes
2 2 SCOP 51381 Tryptophan biosynthesis enzymes
2 2 SCOP 51550 beta-N-acetylhexosaminidase catalytic domain
2 2 SCOP 51599 Class I DAHP synthetase
2 2 SCOP 51943 FAD/NAD-linked reductases, N-terminal and central domains
2 2 SCOP 52097 Clp protease, ClpP subunit
2 2 SCOP 52173 CheY-related
2 2 SCOP 52211 Succinyl-CoA synthetase domains
2 2 SCOP 52243 Cobalamin (vitamin B12)-binding domain
2 2 SCOP 52403 N-type ATP pyrophosphatases
2 2 SCOP 52410 PAPS reductase-like
2 2 SCOP 52744 Subtilases
2 2 SCOP 52769 Arginase-like amidino hydrolases
2 1 SCOP 53080 Acetokinase-like
2 1 SCOP 53089 Glycerol kinase
2 2 SCOP 53099 Ribonuclease H
2 2 SCOP 53138 Ribosomal protein L18 and S11
2 2 SCOP 53168 Purine and uridine phosphorylases
2 2 SCOP 53329 Formyltransferase
2 2 SCOP 53496 Prolyl oligopeptidase, C-terminal domain
2 2 SCOP 53660 Dimeric isocitrate & isopropylmalate dehydrogenases
2 2 SCOP 53672 Aspartate/ornithine carbamoyltransferase
2 2 SCOP 53733 Aconitase iron-sulfur domain
2 2 SCOP 53785 Phosphofructokinase
2 2 SCOP 53791 Tetrapyrrole methylase
2 2 SCOP 53796 PEP carboxykinase C-terminal domain
2 2 SCOP 53851 Phosphate binding protein-like
2 2 SCOP 53914 Chalcone synthase-like
2 1 SCOP 54207 Hexose-1-phosphate uridylyltransferase
2 1 SCOP 54229 Ribonuclease PH domain 1-like
2 2 SCOP 54232 GHMP Kinase, N-terminal domain
2 2 SCOP 54632 CBS-domain pair
2 2 SCOP 54815 Prokaryotic type KH domain (KH-domain type II)
2 2 SCOP 55069 Peptide methionine sulfoxide reductase
2 2 SCOP 55209 Enolpyruvate transferase, EPT
2 1 SCOP 55327 PurM N-terminal domain-like
2 2 SCOP 55425 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
2 2 SCOP 55621 GTP cyclohydrolase I
2 2 SCOP 55879 DNA gyrase/MutL, N-terminal domain
2 2 SCOP 56244 Penicillin acylase, catalytic domain
2 2 SCOP 56323 ADC synthase
2 2 SCOP 56720 Type II DNA topoisomerase
2 2 SCOP 56895 Aquaporin-like
2 2 SCOP 63588 Glycosyltransferase family 36 C-terminal domain
2 2 SCOP 63733 Glycosyltransferase family 36 N-terminal domain
2 2 SCOP 68901 Cytidylytransferase
2 2 SCOP 68924 PEP carboxykinase N-terminal domain
2 2 SCOP 69565 Pyridoxal-dependent decarboxylase
2 2 SCOP 69581 PepX catalytic domain-like
2 1 SCOP 74753 Catalase-peroxidase KatG
2 2 SCOP 74911 Aldose 1-epimerase (mutarotase)
2 2 SCOP 75041 SelR domain
2 2 SCOP 75073 Hydantoinase (dihydropyrimidinase), catalytic domain
2 2 SCOP 75621 Release factor
2 2 SCOP 82172 DPP6 N-terminal domain-like
2 2 SCOP 88741 Branched-chain alpha-keto acid dehydrogenase Pyr module
2 2 SCOP 88766 Branched-chain alpha-keto acid dehydrogenase PP module
2 2 SCOP 88786 C5 cytosine-specific DNA methylase, DCM
2 2 SCOP 89800 Deoxycytidylate deaminase-like
2 2 SCOP 90124 ABC transporter transmembrane region
2 2 SCOP 100888 Lesion bypass DNA polymerase (Y-family), catalytic domain
2 2 SCOP 101984 Pirin-like
2 2 SCOP 102663 Phosphotransacetylase
2 2 SCOP 110863 Proline racemase
2 1 SCOP 142678 Glycine dehydrogenase subunits (GDC-P)
2 2 SCOP 143632 ApbE-like
2 2 SCOP 158775 SusD-like
2 2 SCOP 159832 PBP transglycosylase domain-like
1 1 SCOP 46610 Fe,Mn superoxide dismutase (SOD), N-terminal domain
1 1 SCOP 46947 Ribosomal protein S13
1 1 SCOP 47241 Ferritin
1 1 SCOP 47447 Signal peptide-binding domain
1 1 SCOP 47645 Methionine synthase domain
1 1 SCOP 47730 Prokaryotic DNA-bending protein
1 1 SCOP 47786 NAD+-dependent DNA ligase, domain 3
1 1 SCOP 47974 Ribosomal protein S7
1 1 SCOP 48109 Carbamoyl phosphate synthetase, large subunit connection domain
1 1 SCOP 48154 Mismatch glycosylase
1 1 SCOP 48174 Cryptochrome/photolyase FAD-binding domain
1 1 SCOP 48180 Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
1 1 SCOP 48213 Cellulases catalytic domain
1 1 SCOP 48222 N-acylglucosamine (NAG) epimerase
1 1 SCOP 48257 Citrate synthase
1 1 SCOP 48335 DNA repair protein MutS, domain III
1 1 SCOP 48572 HAL/PAL-like
1 1 SCOP 48577 Isoprenyl diphosphate synthases
1 1 SCOP 48593 GroEL chaperone, ATPase domain
1 1 SCOP 50114 C-terminal domain of ribosomal protein L2
1 1 SCOP 50194 Ribosomal protein L14
1 1 SCOP 50325 Inorganic pyrophosphatase
1 1 SCOP 50461 Ribosomal protein L3
1 1 SCOP 50466 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
1 1 SCOP 50495 Prokaryotic proteases
1 1 SCOP 50693 Pyruvoyl dependent aspartate decarboxylase, ADC
1 1 SCOP 50696 Formate dehydrogenase/DMSO reductase, C-terminal domain
1 1 SCOP 50719 Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain
1 1 SCOP 50953 Soluble quinoprotein glucose dehydrogenase
1 1 SCOP 50975 Nitrous oxide reductase, N-terminal domain
1 1 SCOP 50994 Prolyl oligopeptidase, N-terminal domain
1 1 SCOP 50999 Quinoprotein alcohol dehydrogenase-like
1 1 SCOP 51162 UDP N-acetylglucosamine acyltransferase
1 1 SCOP 51165 Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
1 1 SCOP 51183 dTDP-sugar isomerase
1 1 SCOP 51191 Type I phosphomannose isomerase
1 1 SCOP 51352 Triosephosphate isomerase (TIM)
1 1 SCOP 51372 D-ribulose-5-phosphate 3-epimerase
1 1 SCOP 51413 Inosine monophosphate dehydrogenase (IMPDH)
1 1 SCOP 51420 Alanine racemase-like, N-terminal domain
1 1 SCOP 51446 Amylase, catalytic domain
1 1 SCOP 51534 Type II chitinase
1 1 SCOP 51591 Class II FBP aldolase
1 1 SCOP 51594 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
1 1 SCOP 51605 Enolase
1 1 SCOP 51609 D-glucarate dehydratase-like
1 1 SCOP 51622 Pyruvate kinase
1 1 SCOP 51629 Pyruvate phosphate dikinase, C-terminal domain
1 1 SCOP 51632 Phosphoenolpyruvate carboxylase
1 1 SCOP 51665 Xylose isomerase
1 1 SCOP 51691 NadC C-terminal domain-like
1 1 SCOP 51714 tRNA-guanine transglycosylase
1 1 SCOP 51718 Dihydropteroate synthetase
1 1 SCOP 51727 Uroporphyrinogen decarboxylase, UROD
1 1 SCOP 51731 Methylenetetrahydrofolate reductase
1 1 SCOP 51736 Alcohol dehydrogenase-like, C-terminal domain
1 1 SCOP 51848 LDH N-terminal domain-like
1 1 SCOP 51900 CoA-binding domain
1 1 SCOP 51972 N-terminal domain of adrenodoxin reductase-like
1 1 SCOP 52002 R1 subunit of ribonucleotide reductase, C-terminal domain
1 1 SCOP 52010 Pyruvate phosphate dikinase, central domain
1 1 SCOP 52017 LeuD-like
1 1 SCOP 52022 Carbamoyl phosphate synthetase, small subunit N-terminal domain
1 1 SCOP 52030 GroEL-like chaperone, apical domain
1 1 SCOP 52081 Ribosomal proteins L15p and L18e
1 1 SCOP 52122 Lumazine synthase
1 1 SCOP 52142 Uracil-DNA glycosylase
1 1 SCOP 52152 FabD-like
1 1 SCOP 52162 Ribosomal protein L13
1 1 SCOP 52167 Ribosomal protein L4
1 1 SCOP 52256 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
1 1 SCOP 52284 Formate/glycerate dehydrogenases, substrate-binding domain
1 1 SCOP 52300 S-adenosylhomocystein hydrolase
1 1 SCOP 52305 Type II 3-dehydroquinate dehydratase
1 1 SCOP 52314 Ribosomal protein S2
1 1 SCOP 52331 Aspartyl dipeptidase PepE
1 1 SCOP 52397 Adenylyltransferase
1 1 SCOP 52419 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
1 1 SCOP 52471 C-terminal domain of the electron transfer flavoprotein alpha subunit
1 1 SCOP 52475 Pyruvate oxidase and decarboxylase, middle domain
1 1 SCOP 52491 Tubulin, GTPase domain
1 1 SCOP 52508 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
1 1 SCOP 52513 NagB-like
1 1 SCOP 52584 Phosphoribulokinase/pantothenate kinase
1 1 SCOP 52789 Low-molecular-weight phosphotyrosine protein phosphatases
1 1 SCOP 52926 Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
1 1 SCOP 52931 Pyruvate-ferredoxin oxidoreductase, PFOR, domain II
1 1 SCOP 52944 ATP synthase (F1-ATPase), gamma subunit
1 1 SCOP 52955 Anticodon-binding domain of Class II aaRS
1 1 SCOP 52973 ITPase (Ham1)
1 1 SCOP 53118 DnaQ-like 3'-5' exonuclease
1 1 SCOP 53134 RuvC resolvase
1 1 SCOP 53179 Peptidyl-tRNA hydrolase-like
1 1 SCOP 53224 Aminoacid dehydrogenases
1 1 SCOP 53235 Tetrahydrofolate dehydrogenase/cyclohydrolase
1 1 SCOP 53240 Malic enzyme N-domain
1 1 SCOP 53245 MurCDEF C-terminal domain
1 1 SCOP 53296 Phosphoribosylpyrophosphate synthetase-like
1 1 SCOP 53324 Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
1 1 SCOP 53354 Protein-L-isoaspartyl O-methyltransferase
1 1 SCOP 53464 glucose-1-phosphate thymidylyltransferase
1 1 SCOP 53624 MurCDEF
1 1 SCOP 53629 Folylpolyglutamate synthetase
1 1 SCOP 53650 Alkaline phosphatase
1 1 SCOP 53698 double-SIS domain
1 1 SCOP 53701 Phosphoglucose isomerase, PGI
1 1 SCOP 53749 Phosphoglycerate kinase
1 1 SCOP 53760 Peptidoglycan biosynthesis glycosyltransferase MurG
1 1 SCOP 53775 Glutaminase/Asparaginase
1 1 SCOP 53801 Ferrochelatase
1 1 SCOP 54066 DNA/RNA non-specific endonuclease
1 1 SCOP 54224 DNA gyrase/MutL, second domain
1 1 SCOP 54535 FKBP immunophilin/proline isomerase
1 1 SCOP 54571 Ribosomal protein S19
1 1 SCOP 54602 Extradiol dioxygenases
1 1 SCOP 54720 Fe,Mn superoxide dismutase (SOD), C-terminal domain
1 1 SCOP 54737 Ribosomal protein L7/12, C-terminal domain
1 1 SCOP 54748 Ribosomal L11/L12e N-terminal domain
1 1 SCOP 54811 GMP synthetase C-terminal dimerisation domain
1 1 SCOP 54822 Ribosomal protein S3 C-terminal domain
1 1 SCOP 54827 Enolase N-terminal domain-like
1 1 SCOP 54920 Nucleoside diphosphate kinase, NDK
1 1 SCOP 54981 EF-G/eEF-2 domains III and V
1 1 SCOP 55000 Ribosomal protein S10
1 1 SCOP 55032 Bacterial exopeptidase dimerisation domain
1 1 SCOP 55041 Molybdenum cofactor biosynthesis protein C, MoaC
1 1 SCOP 55074 Adenylyl and guanylyl cyclase catalytic domain
1 1 SCOP 55121 Pseudouridine synthase I TruA
1 1 SCOP 55178 Ribosomal protein S4
1 1 SCOP 55187 Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
1 1 SCOP 55195 Ribosome recycling factor, RRF
1 1 SCOP 55272 DNA repair protein MutS, domain I
1 1 SCOP 55283 Ribosomal protein L5
1 1 SCOP 55505 Neurolysin-like
1 1 SCOP 55625 6-pyruvoyl tetrahydropterin synthase
1 1 SCOP 55667 Ribonuclease PH domain 2-like
1 1 SCOP 55812 MutT-like
1 1 SCOP 55822 YrdC-like
1 1 SCOP 55832 Thymidylate synthase/dCMP hydroxymethylase
1 1 SCOP 55875 Heat shock protein 90, HSP90, N-terminal domain
1 1 SCOP 56004 Molybdenum cofactor-binding domain
1 1 SCOP 56038 B3/B4 domain of PheRS, PheT
1 1 SCOP 56043 PurM C-terminal domain-like
1 1 SCOP 56048 Ribosomal protein S8
1 1 SCOP 56081 Succinyl-CoA synthetase, beta-chain, N-terminal domain
1 1 SCOP 56085 Pyruvate phosphate dikinase, N-terminal domain
1 1 SCOP 56096 Adenylation domain of NAD+-dependent DNA ligase
1 1 SCOP 56184 Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain
1 1 SCOP 56195 Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
1 1 SCOP 56220 DNase I-like
1 1 SCOP 56261 (Glycosyl)asparaginase
1 1 SCOP 56267 DmpA-like
1 1 SCOP 56282 Zn metallo-beta-lactamase
1 1 SCOP 56307 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain
1 1 SCOP 56328 Lactate & malate dehydrogenases, C-terminal domain
1 1 SCOP 56350 Lambda integrase-like, catalytic core
1 1 SCOP 56421 Peptide deformylase
1 1 SCOP 56508 Methionine synthase SAM-binding domain
1 1 SCOP 56525 Oxidoreductase molybdopterin-binding domain
1 1 SCOP 56535 Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
1 1 SCOP 56543 Substrate-binding domain of HMG-CoA reductase
1 1 SCOP 56656 Inositol monophosphatase/fructose-1,6-bisphosphatase-like
1 1 SCOP 56673 DNA polymerase I
1 1 SCOP 56713 Prokaryotic type I DNA topoisomerase
1 1 SCOP 56732 DNA primase DnaG catalytic core
1 1 SCOP 56753 D-aminoacid aminotransferase-like PLP-dependent enzymes
1 1 SCOP 56797 Dehydroquinate synthase, DHQS
1 1 SCOP 56809 Ribosomal protein L1
1 1 SCOP 56948 Ligand-gated protein channel
1 1 SCOP 63883 MoeA N-terminal region -like
1 1 SCOP 63893 Pyridoxine 5'-phosphate synthase
1 1 SCOP 63971 Inosicase
1 1 SCOP 63976 Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
1 1 SCOP 63984 Sir2 family of transcriptional regulators
1 1 SCOP 64006 Undecaprenyl diphosphate synthase
1 1 SCOP 64089 BadF/BadG/BcrA/BcrD-like
1 1 SCOP 64159 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
1 1 SCOP 64162 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, catalytic domain
1 1 SCOP 64168 SurE-like
1 1 SCOP 64198 AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
1 1 SCOP 64264 Prokaryotic ribosomal protein L17
1 1 SCOP 64372 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
1 1 SCOP 64485 RNA-polymerase beta
1 1 SCOP 64490 RNA-polymerase beta-prime
1 1 SCOP 69222 PepX C-terminal domain-like
1 1 SCOP 69337 Alpha subunit of glutamate synthase, C-terminal domain
1 1 SCOP 69501 DTD-like
1 1 SCOP 69573 Molybdenum cofactor biosynthesis protein MoeB
1 1 SCOP 69599 mono-SIS domain
1 1 SCOP 69602 L-histidinol dehydrogenase HisD
1 1 SCOP 69746 Pseudouridine synthase II TruB
1 1 SCOP 69912 Clc chloride channel
1 1 SCOP 74656 CoA transferase alpha subunit-like
1 1 SCOP 74657 CoA transferase beta subunit-like
1 1 SCOP 74732 Ribosomal protein L20
1 1 SCOP 74756 3-Methyladenine DNA glycosylase I (Tag)
1 1 SCOP 74983 Small protein B (SmpB)
1 1 SCOP 75079 Renal dipeptidase
1 1 SCOP 75082 Uronate isomerase-like
1 1 SCOP 75173 beta-Phosphoglucomutase-like
1 1 SCOP 75292 YjeF C-terminal domain-like
1 1 SCOP 75297 N-acetyl-l-glutamate kinase
1 1 SCOP 75323 Exonuclease RecJ
1 1 SCOP 75459 Pseudouridine synthase RsuA/RluD
1 1 SCOP 75626 YebC-like
1 1 SCOP 75648 ABC transporter involved in vitamin B12 uptake, BtuC
1 1 SCOP 81441 Cytochrome c oxidase subunit I-like
1 1 SCOP 81887 Helical scaffold and wing domains of SecA
1 1 SCOP 82052 Obg GTP-binding protein N-terminal domain
1 1 SCOP 82264 D-aminoacylase, catalytic domain
1 1 SCOP 82267 TatD Mg-dependent DNase-like
1 1 SCOP 82283 Homocysteine S-methyltransferase
1 1 SCOP 82359 PP-loop ATPase
1 1 SCOP 82371 YbeA-like
1 1 SCOP 82497 DPP6 catalytic domain-like
1 1 SCOP 82526 Monomeric isocitrate dehydrogenase
1 1 SCOP 82540 Trehalose-6-phosphate synthase, OtsA
1 1 SCOP 82583 G domain-linked domain
1 1 SCOP 82636 MaoC-like
1 1 SCOP 82867 Multidrug efflux transporter AcrB transmembrane domain
1 1 SCOP 88683 Eukaryotic ODC-like
1 1 SCOP 88724 Pyruvate oxidase and decarboxylase Pyr module
1 1 SCOP 88735 TK-like Pyr module
1 1 SCOP 88746 PFOR Pyr module
1 1 SCOP 88749 Pyruvate oxidase and decarboxylase PP module
1 1 SCOP 88760 TK-like PP module
1 1 SCOP 88771 PFOR PP module
1 1 SCOP 88784 rRNA adenine dimethylase-like
1 1 SCOP 89032 Cobalamin adenosyltransferase
1 1 SCOP 89503 Ketopantoate hydroxymethyltransferase PanB
1 1 SCOP 89624 Ribose/Galactose isomerase RpiB/AlsB
1 1 SCOP 89629 tRNA(m1G37)-methyltransferase TrmD
1 1 SCOP 89863 PhzC/PhzF-like
1 1 SCOP 100921 Heat shock protein 70kD (HSP70), peptide-binding domain
1 1 SCOP 101354 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 SCOP 101884 Glycosyl hydrolases family 32 N-terminal domain
1 1 SCOP 101905 GyrA/ParC C-terminal domain-like
1 1 SCOP 101961 Stabilizer of iron transporter SufD
1 1 SCOP 101995 PA3696/SPS0176-like
1 1 SCOP 102118 Oxygen-independent coproporphyrinogen III oxidase HemN
1 1 SCOP 102575 NOL1/NOP2/sun
1 1 SCOP 102589 LmbE-like
1 1 SCOP 102646 CoaB-like
1 1 SCOP 102706 NIF3 (NGG1p interacting factor 3)-like
1 1 SCOP 102755 Hsp90 middle domain
1 1 SCOP 102769 ATP-dependent protease Lon (La), catalytic domain
1 1 SCOP 102887 Coproporphyrinogen III oxidase
1 1 SCOP 102945 RelA/SpoT domain
1 1 SCOP 103026 Aminomethyltransferase folate-binding domain
1 1 SCOP 103248 TT1751-like
1 1 SCOP 103264 Chorismate synthase, AroC
1 1 SCOP 109756 PhoU-like
1 1 SCOP 109855 YfiT-like putative metal-dependent hydrolases
1 1 SCOP 109953 Glycosyl Hydrolase Family 88
1 1 SCOP 109965 BC3264-like
1 1 SCOP 110284 TM1225-like predicted glycosylases
1 1 SCOP 110318 KduI-like
1 1 SCOP 110368 NeuB-like
1 1 SCOP 110377 UxuA-like
1 1 SCOP 110388 MoCo biosynthesis proteins
1 1 SCOP 110396 CutC-like
1 1 SCOP 110734 Glycosyl transferases group 1
1 1 SCOP 110739 Glycerate kinase I
1 1 SCOP 111305 Recombination protein RecR
1 1 SCOP 111327 Urocanase
1 1 SCOP 111332 NAD kinase-like
1 1 SCOP 111338 QueA-like
1 1 SCOP 111353 Ammonium transporter
1 1 SCOP 117372 YicI catalytic domain-like
1 1 SCOP 117449 LamB/YcsF-like
1 1 SCOP 117558 Type II thymidine kinase
1 1 SCOP 117888 Ribosomal protein L16p
1 1 SCOP 140479 LemA-like
1 1 SCOP 140769 MioX-like
1 1 SCOP 140991 FtsH protease domain-like
1 1 SCOP 141245 Ribosomal protein L19
1 1 SCOP 141618 3-hydroxyanthranilic acid dioxygenase-like
1 1 SCOP 141628 AlkB-like
1 1 SCOP 142606 N-6 DNA Methylase-like
1 1 SCOP 143549 Serine dehydratase beta chain-like
1 1 SCOP 143598 YojJ-like
1 1 SCOP 143642 LplA-like
1 1 SCOP 143711 LFTR-like
1 1 SCOP 143906 Gamma-glutamyltranspeptidase-like
1 1 SCOP 143916 RNase Z-like
1 1 SCOP 143927 beta-CASP RNA-metabolising hydrolases
1 1 SCOP 143976 lvD/EDD N-terminal domain-like
1 1 SCOP 144028 Nqo4-like
1 1 SCOP 144031 Nq06-like
1 1 SCOP 158588 Jann4075-like
1 1 SCOP 158600 MgsA/YrvN C-terminal domain-like
1 1 SCOP 158833 Tex N-terminal region-like
1 1 SCOP 159112 RNB domain-like
1 1 SCOP 159249 PH0987 C-terminal domain-like
1 1 SCOP 159400 Imidazolonepropionase-like
1 1 SCOP 159408 Zn-dependent arginine carboxypeptidase-like
1 1 SCOP 159416 Mll9387-like
1 1 SCOP 159508 EreA-like
1 1 SCOP 159635 Tex RuvX-like domain-like
1 1 SCOP 159720 mannose-1-phosphate guanylyl transferase
1 1 SCOP 159756 O-acetyltransferase
1 1 SCOP 160018 PFL3262-like
1 1 SCOP 161094 MgtE membrane domain-like

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The following families have one or more weak hits:

SCOP family PspA lactotransferrin-binding region
SCOP family Cation efflux protein transmembrane domain-like
SCOP family MetI-like
SCOP family HI0933 insert domain-like
SCOP family Diacylglycerol kinase-like
SCOP family ADPRibase-Mn-like
SCOP family CorC/HlyC domain-like
SCOP family NE1680-like
SCOP family BT0923-like
SCOP family PH0987 N-terminal domain-like
SCOP family SP0830-like
SCOP family Ribosomal protein L10-like
SCOP family Iojap/YbeB-like
SCOP family Cation efflux protein cytoplasmic domain-like
SCOP family Atu0742-like
SCOP family MM3350-like
SCOP family IroE-like
SCOP family HI0933 N-terminal domain-like
SCOP family Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain
SCOP family AlaX-M N-terminal domain-like
SCOP family MgtE N-terminal domain-like
SCOP family Tex HhH-containing domain-like
SCOP family HAMP domain
SCOP family MiaE-like
SCOP family Ribosomal protein L33p
SCOP family Ribosomal protein L32p
SCOP family Rhomboid-like
SCOP family Dac-like
SCOP family Type I restriction modification DNA specificity domain
SCOP family Sulfatase-modifying factor-like
SCOP family Ribosomal protein L31p
SCOP family Ribosomal protein L28
SCOP family BT0354 N-terminal domain-like
SCOP family YkuI C-terminal domain-like
SCOP family Hyaluronidase N-terminal domain-like
SCOP family TRCF domain
SCOP family UTRA domain
SCOP family VC0467-like
SCOP family Aspartokinase allosteric domain-like
SCOP family IlvH-like
SCOP family BB1717-like
SCOP family Ribosomal protein L35p
SCOP family YjbR-like
SCOP family NlpC/P60
SCOP family RibD C-terminal domain-like
SCOP family RibA-like
SCOP family TrmB-like
SCOP family YhhF-like
SCOP family AstE/AspA-like
SCOP family CoaX-like
SCOP family CinA-like
SCOP family Histidinol phosphatase-like
SCOP family Putative acetylxylan esterase-like
SCOP family Nqo1 FMN-binding domain-like
SCOP family IlvD/EDD C-terminal domain-like
SCOP family GidA-like
SCOP family Adenine deaminase-like
SCOP family TM1410-like
SCOP family HisI-like
SCOP family LON domain-like
SCOP family PhyH-like
SCOP family Pentapeptide repeats
SCOP family L,D-transpeptidase catalytic domain-like
SCOP family CarD-like
SCOP family PhnA-like
SCOP family Ribosomal protein L21p
SCOP family CalX-beta domain
SCOP family Atu0492-like
SCOP family Bacterial tryptophan 2,3-dioxygenase
SCOP family HisE-like (PRA-PH)
SCOP family TyrA dimerization domain-like
SCOP family DinB-like
SCOP family HxlR-like
SCOP family Nudix-associated domain
SCOP family Coenzyme PQQ synthesis protein B, PqqB
SCOP family DNA mismatch repair protein MutL
SCOP family CYTH domain
SCOP family PaaD-like
SCOP family NifU C-terminal domain-like
SCOP family Band 7/SPFH domain
SCOP family MRR-like
SCOP family Restriction endonuclease EcoO109IR
SCOP family TM1631-like
SCOP family Putative glucosidase YicI, domain 3
SCOP family Kelch motif
SCOP family YicI N-terminal domain-like
SCOP family MazG-like
SCOP family ProC C-terminal domain-like
SCOP family TrkA C-terminal domain-like
SCOP family OmpH-like
SCOP family HlyD-like secretion proteins
SCOP family Porphyromonas-type peptidylarginine deiminase
SCOP family H-NOX domain
SCOP family YjbQ-like
SCOP family VanX-like
SCOP family FGAM synthase PurL, PurS-like domain
SCOP family Sporulation related repeat
SCOP family HSP90 C-terminal domain
SCOP family 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
SCOP family FabZ-like
SCOP family ParB-like nuclease domain
SCOP family Hypothetical protein SAV1430
SCOP family ROK
SCOP family YeaZ-like
SCOP family Methenyltetrahydrofolate synthetase
SCOP family Trehalose-phosphatase
SCOP family Ornithine cyclodeaminase-like
SCOP family Hypothetical protein EF3133
SCOP family Ribosomal L27 protein
SCOP family Serine acetyltransferase
SCOP family Oligoxyloglucan reducing end-specific cellobiohydrolase
SCOP family ApaG-like
SCOP family FGAM synthase PurL, linker domain
SCOP family KorB DNA-binding domain-like
SCOP family DnaK suppressor protein DksA, alpha-hairpin domain
SCOP family TSP type-3 repeat
SCOP family Preprotein translocase SecY subunit
SCOP family Multidrug resistance efflux transporter EmrE
SCOP family LacY-like proton/sugar symporter
SCOP family Hypothetical protein TM0207
SCOP family Lysine biosynthesis enzyme LysX ATP-binding domain
SCOP family Hypothetical protein TM0160
SCOP family Predicted metal-dependent hydrolase
SCOP family OmpA-like
SCOP family Galactokinase
SCOP family PG130-like
SCOP family Cell division protein ZapA-like
SCOP family PhzA/PhzB-like
SCOP family SnoaL-like polyketide cyclase
SCOP family YigZ N-terminal domain-like
SCOP family Imidazole glycerol phosphate dehydratase
SCOP family Trigger factor ribosome-binding domain
SCOP family Phosphonoacetate hydrolase
SCOP family (Uracil-5-)-methyltransferase
SCOP family Ribosomal protein L11 methyltransferase PrmA
SCOP family Bacterial fluorinating enzyme, N-terminal domain
SCOP family N-acetylmuramoyl-L-alanine amidase-like
SCOP family Putative Holliday junction resolvase RuvX
SCOP family Creatininase
SCOP family Putative cyclase
SCOP family Hypothetical protein MraZ
SCOP family Peptidoglycan hydrolase LytM
SCOP family NHL repeat
SCOP family Serum paraoxonase/arylesterase 1, PON1
SCOP family YceI-like
SCOP family Bacterial fluorinating enzyme, C-terminal domain
SCOP family MOSC (MOCO sulphurase C-terminal) domain
SCOP family Aminopeptidase/glucanase lid domain
SCOP family Aminomethyltransferase beta-barrel domain
SCOP family Glycosyl hydrolases family 32 C-terminal domain
SCOP family RecQ helicase DNA-binding domain-like
SCOP family FUR-like
SCOP family Penicillinase repressor
SCOP family Heat shock protein 70kD (HSP70), C-terminal subdomain
SCOP family Lesion bypass DNA polymerase (Y-family), little finger domain
SCOP family AglA-like glucosidase
SCOP family YhfA-like
SCOP family Plant stress-induced protein
SCOP family Ribosome-binding factor A, RbfA
SCOP family PaaI/YdiI-like
SCOP family UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC
SCOP family Dodecin-like
SCOP family ADP-heptose LPS heptosyltransferase II
SCOP family N5-glutamine methyltransferase, HemK
SCOP family YggJ C-terminal domain-like
SCOP family NADPH-dependent FMN reductase
SCOP family Polygalacturonase inhibiting protein PGIP
SCOP family RraA-like
SCOP family PHP domain
SCOP family Glycerophosphoryl diester phosphodiesterase
SCOP family HMGL-like
SCOP family YggJ N-terminal domain-like
SCOP family TM1287-like
SCOP family HesB-like domain
SCOP family GatB/YqeY domain
SCOP family LysR-like transcriptional regulators
SCOP family Sigma2 domain of RNA polymerase sigma factors
SCOP family ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain
SCOP family Alanine racemase
SCOP family Sigma4 domain
SCOP family Mechanosensitive channel protein MscS (YggB), transmembrane region
SCOP family Ohr/OsmC resistance proteins
SCOP family GIY-YIG endonuclease
SCOP family Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
SCOP family Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
SCOP family Mechanosensitive channel protein MscS (YggB), C-terminal domain
SCOP family N-utilization substance G protein NusG, N-terminal domain
SCOP family Poly A polymerase head domain-like
SCOP family SufE-like
SCOP family Adaptor protein ClpS (YljA)
SCOP family YbaB-like
SCOP family MraW-like putative methyltransferases
SCOP family Predicted hydrolases Cof
SCOP family Shikimate dehydrogenase-like
SCOP family Proline dehydrohenase domain of bifunctional PutA protein
SCOP family D-aminoacylase
SCOP family Hypoxia-inducible factor HIF ihhibitor (FIH1)
SCOP family Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
SCOP family FAS1 domain
SCOP family ATP-dependent riboflavin kinase-like
SCOP family Mechanosensitive channel protein MscS (YggB), middle domain
SCOP family N-utilization substance G protein NusG, C-terminal domain
SCOP family Double Clp-N motif
SCOP family Poly A polymerase C-terminal region-like
SCOP family Mannitol 2-dehydrogenase
SCOP family Porin chaperone SurA, peptide-binding domain
SCOP family Putative methyltransferase TM0872, insert domain
SCOP family Pre-protein crosslinking domain of SecA
SCOP family Chromosomal replication initiation factor DnaA C-terminal domain IV
SCOP family Meta-cation ATPase, catalytic domain P
SCOP family Calcium ATPase, transduction domain A
SCOP family F1F0 ATP synthase subunit B, membrane domain
SCOP family Photosystem I subunits PsaA/PsaB
SCOP family Cytochrome c oxidase subunit II-like, transmembrane region
SCOP family Cytochrome c oxidase subunit III-like
SCOP family F1F0 ATP synthase subunit A
SCOP family F1F0 ATP synthase subunit C
SCOP family Gated mechanosensitive channel
SCOP family Voltage-gated potassium channels
SCOP family Molybdenum-containing oxidoreductases-like dimerisation domain
SCOP family E-set domains of sugar-utilizing enzymes
SCOP family TGS domain
SCOP family Siroheme synthase middle domains-like
SCOP family RNA 2'-O ribose methyltransferase substrate binding domain
SCOP family YhbC-like, N-terminal domain
SCOP family Glucose-inhibited division protein B (GidB)
SCOP family YjeE-like
SCOP family Gluconate kinase
SCOP family Siroheme synthase N-terminal domain-like
SCOP family Hypothetical protein YgbM (EC1530)
SCOP family Hydantoinase (dihydropyrimidinase)
SCOP family alpha-L-arabinanase-like
SCOP family YhbC-like, C-terminal domain
SCOP family Lamin A/C globular tail domain
SCOP family Iron-containing alcohol dehydrogenase
SCOP family Argininosuccinate synthetase, C-terminal domain
SCOP family Ribosome binding protein Y (YfiA homologue)
SCOP family Glutamyl tRNA-reductase catalytic, N-terminal domain
SCOP family Lrp/AsnC-like transcriptional regulator C-terminal domain
SCOP family DsrC, the gamma subunit of dissimilatory sulfite reductase
SCOP family Transcription factor NusA, N-terminal domain
SCOP family HemD-like
SCOP family Glycerol-3-phosphate (1)-acyltransferase
SCOP family ArsC-like
SCOP family Integrin alpha N-terminal domain
SCOP family Tricorn protease N-terminal domain
SCOP family RecG "wedge" domain
SCOP family Glutamyl tRNA-reductase dimerization domain
SCOP family RNase III catalytic domain-like
SCOP family Lrp/AsnC-like transcriptional regulator N-terminal domain
SCOP family C-terminal domain of ProRS
SCOP family Phosphoserine phosphatase
SCOP family Carbamilase
SCOP family Dimethylarginine dimethylaminohydrolase DDAH
SCOP family IPP isomerase-like
SCOP family Leukotriene A4 hydrolase catalytic domain
SCOP family TonB
SCOP family Mevalonate 5-diphosphate decarboxylase
SCOP family Methylmalonyl-CoA epimerase
SCOP family Manganese-dependent inorganic pyrophosphatase (family II)
SCOP family Gtf glycosyltransferase
SCOP family YjeF N-terminal domain-like
SCOP family MoeA central domain-like
SCOP family Potassium channel NAD-binding domain
SCOP family MoeA C-terminal domain-like
SCOP family SGL-like
SCOP family Leukotriene A4 hydrolase N-terminal domain
SCOP family Family 9 carbohydrate-binding module, CBD9
SCOP family Fumarylacetoacetate hydrolase, FAH, N-terminal domain
SCOP family TS-N domain
SCOP family MurE/MurF N-terminal domain
SCOP family MPP-like
SCOP family Nitrosocyanin
SCOP family Ferredoxin reductase FAD-binding domain-like
SCOP family MarR-like transcriptional regulators
SCOP family Delta-sleep-inducing peptide immunoreactive peptide
SCOP family Coiled-coil domain of nucleotide exchange factor GrpE
SCOP family DnaJ/Hsp40 cysteine-rich domain
SCOP family Ribosomal protein L36
SCOP family DNA primase zinc finger
SCOP family Methionyl-tRNA synthetase (MetRS), Zn-domain
SCOP family Ribosomal protein S14
SCOP family Small Kunitz-type inhibitors & BPTI-like toxins
SCOP family Anthrax protective antigen
SCOP family Perfringolysin
SCOP family Outer membrane efflux proteins (OEP)
SCOP family Outer membrane protein
SCOP family YihX-like
SCOP family HAD-related
SCOP family Insert subdomain of RNA polymerase alpha subunit
SCOP family Penicillin binding protein dimerisation domain
SCOP family Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
SCOP family Nitrilase
SCOP family Glyoxalase II (hydroxyacylglutathione hydrolase)
SCOP family Penicillin V acylase
SCOP family CO dehydrogenase flavoprotein N-terminal domain-like
SCOP family ATP-binding domain of peptide synthetases
SCOP family Ribosomal protein L6
SCOP family Nitrite and sulphite reductase 4Fe-4S domain-like
SCOP family DNA polymerase III, beta subunit
SCOP family Phosphoglucomutase, C-terminal domain
SCOP family Glutamine synthetase catalytic domain
SCOP family Histidine kinase
SCOP family N-acetylmuramoyl-L-alanine amidase-like
SCOP family 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
SCOP family PR-1-like
SCOP family Heme-binding PAS domain
SCOP family GAF domain
SCOP family Biotin holoenzyme synthetase
SCOP family N-terminal domain of RNase HI
SCOP family Ribosomal protein L9 N-domain
SCOP family Ribosomal protein L9 C-domain
SCOP family beta-N-acetylhexosaminidase domain
SCOP family NADH oxidase/flavin reductase
SCOP family CO dehydrogenase flavoprotein C-terminal domain-like
SCOP family Glucose 6-phosphate dehydrogenase-like
SCOP family Dihydrodipicolinate reductase-like
SCOP family Tubulin, C-terminal domain
SCOP family YjgF/L-PSP
SCOP family GAD domain
SCOP family RNA polymerase alpha subunit dimerisation domain
SCOP family PCD-like
SCOP family Translation initiation factor IF3, C-terminal domain
SCOP family eIF1-like
SCOP family Ribosomal protein L30p/L7e
SCOP family Duplicated SiR/NiR-like domains 1 and 3
SCOP family 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
SCOP family Homoserine kinase
SCOP family Probable ACP-binding domain of malonyl-CoA ACP transacylase
SCOP family NAD-binding domain of HMG-CoA reductase
SCOP family Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
SCOP family HMA, heavy metal-associated domain
SCOP family Ribosomal protein S6
SCOP family Anticodon-binding domain of PheRS
SCOP family Prokaryotic signal transducing protein
SCOP family Ferredoxin domains from multidomain proteins
SCOP family Short-chain ferredoxins
SCOP family GroEL-like chaperone, intermediate domain
SCOP family Ribosomal protein L22
SCOP family Eukaryotic type KH-domain (KH-domain type I)
SCOP family Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
SCOP family Ribosomal S5 protein, N-terminal domain
SCOP family Double-stranded RNA-binding domain (dsRBD)
SCOP family RecA protein, C-terminal domain
SCOP family Elongation factor Ts (EF-Ts), dimerisation domain
SCOP family Molybdopterin synthase subunit MoaE
SCOP family NadC N-terminal domain-like
SCOP family CO dehydrogenase molybdoprotein N-domain-like
SCOP family 4HBT-like
SCOP family Antibiotic resistance proteins
SCOP family Ribosomal protein S16
SCOP family Chitinase insertion domain
SCOP family GreA transcript cleavage factor, C-terminal domain
SCOP family Diaminopimelate epimerase
SCOP family GMC oxidoreductases
SCOP family Translation initiation factor IF3, N-terminal domain
SCOP family 2Fe-2S ferredoxin domains from multidomain proteins
SCOP family RNase P protein
SCOP family HIT (HINT, histidine triad) family of protein kinase-interacting proteins
SCOP family L23p
SCOP family Penicillin-binding protein 2x (pbp-2x), c-terminal domain
SCOP family LysM domain
SCOP family Bacterial muramidase, catalytic domain
SCOP family Cytidine deaminase
SCOP family Phosphoglucomutase, first 3 domains
SCOP family Aspartate/glutamate racemase
SCOP family Dihydrofolate reductases
SCOP family Carboxylesterase/thioesterase 1
SCOP family Carbon-carbon bond hydrolase
SCOP family Dienelactone hydrolase
SCOP family Haloalkane dehalogenase
SCOP family Serine carboxypeptidase-like
SCOP family Carboxylesterase
SCOP family Spore coat polysaccharide biosynthesis protein SpsA
SCOP family COMT-like
SCOP family Integrin A (or I) domain
SCOP family Pancreatic carboxypeptidases
SCOP family Methylated DNA-protein cysteine methyltransferase domain
SCOP family DNA repair protein MutS, domain II
SCOP family Creatinase/prolidase N-terminal domain
SCOP family beta-carbonic anhydrase, cab
SCOP family 5' to 3' exonuclease catalytic domain
SCOP family Very short patch repair (VSR) endonuclease
SCOP family Maf-like
SCOP family Pyruvate kinase, C-terminal domain
SCOP family Transketolase C-terminal domain-like
SCOP family Thioltransferase
SCOP family Multidomain sulfurtransferase (rhodanese)
SCOP family Adenosine-5'phosphosulfate kinase (APS kinase)
SCOP family Shikimate kinase (AroK)
SCOP family Prokaryotic glutathione synthetase, N-terminal domain
SCOP family D-Alanine ligase N-terminal domain
SCOP family Universal stress protein-like
SCOP family ETFP subunits
SCOP family Cryptochrome/photolyase, N-terminal domain
SCOP family UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
SCOP family Cytidylyltransferase
SCOP family DJ-1/PfpI
SCOP family L-alanine dehydrogenase-like
SCOP family Beta-D-glucan exohydrolase, C-terminal domain
SCOP family Acetylhydrolase
SCOP family Initiation factor IF2/eIF5b, domain 3
SCOP family Mug-like
SCOP family DNA ligase
SCOP family Anti-sigma factor antagonist SpoIIaa
SCOP family Internalin LRR domain
SCOP family PA domain
SCOP family MurCD N-terminal domain
SCOP family Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
SCOP family FAD-linked reductases, N-terminal domain
SCOP family C-terminal domain of adrenodoxin reductase-like
SCOP family Methyltetrahydrofolate-utiluzing methyltransferases
SCOP family "Hypothetical" protein ybl036c
SCOP family Decarboxylase
SCOP family Epsilon subunit of F1F0-ATP synthase N-terminal domain
SCOP family Type 1 signal peptidase
SCOP family AFP III-like domain
SCOP family cAMP-binding domain
SCOP family Penicillin synthase-like
SCOP family Homogentisate dioxygenase
SCOP family gamma-carbonic anhydrase-like
SCOP family Galactoside acetyltransferase-like
SCOP family Head domain of nucleotide exchange factor GrpE
SCOP family alpha-Amylases, C-terminal beta-sheet domain
SCOP family Pyruvate kinase beta-barrel domain
SCOP family Ribosomal protein L25-like
SCOP family N-terminal domain of alpha and beta subunits of F1 ATP synthase
SCOP family Post formyltransferase domain
SCOP family NADH:FMN oxidoreductase-like
SCOP family DNA ligase/mRNA capping enzyme postcatalytic domain
SCOP family Myf domain
SCOP family Single strand DNA-binding domain, SSB
SCOP family DNA helicase RuvA subunit, N-terminal domain
SCOP family Anticodon-binding domain
SCOP family Alcohol dehydrogenase-like, N-terminal domain
SCOP family GroES
SCOP family eIF5a N-terminal domain-like
SCOP family Ribosomal proteins L24p and L21e
SCOP family FeoA-like
SCOP family Ring hydroxylating alpha subunit ISP domain
SCOP family beta-Galactosidase, domain 5
SCOP family Glycosyl hydrolases family 16
SCOP family Galactose-binding domain
SCOP family HSP20
SCOP family Periplasmic domain of cytochrome c oxidase subunit II
SCOP family Plastocyanin/azurin-like
SCOP family HSP40/DnaJ peptide-binding domain
SCOP family Cna protein B-type domain
SCOP family Invasin/intimin cell-adhesion fragments
SCOP family Purple acid phosphatase, N-terminal domain
SCOP family Cadherin
SCOP family beta-Galactosidase/glucuronidase domain
SCOP family PKD domain
SCOP family Fibronectin type III
SCOP family Cytochrome c3-like
SCOP family Squalene synthase
SCOP family P1 nuclease
SCOP family Tetracyclin repressor-like, C-terminal domain
SCOP family Tetratricopeptide repeat (TPR)
SCOP family Ankyrin repeat
SCOP family Ribosomal protein L7/12, oligomerisation (N-terminal) domain
SCOP family Glycerol-3-phosphate dehydrogenase
SCOP family UDP-glucose/GDP-mannose dehydrogenase dimerisation domain
SCOP family HCDH C-domain-like
SCOP family Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI)
SCOP family R1 subunit of ribonucleotide reductase, N-terminal domain
SCOP family C-terminal domain of glutamyl-tRNA synthetase (GluRS)
SCOP family Endonuclease III
SCOP family N-terminal domain of DnaB helicase
SCOP family Antitermination factor NusB
SCOP family Iron-dependent repressor protein, dimerization domain
SCOP family N-terminal domain of the delta subunit of the F1F0-ATP synthase
SCOP family HRDC domain from helicases
SCOP family 5' to 3' exonuclease, C-terminal subdomain
SCOP family C-terminal domain of RNA polymerase alpha subunit
SCOP family DNA helicase RuvA subunit, middle domain
SCOP family CO dehydrogenase ISP C-domain like
SCOP family Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
SCOP family GalR/LacI-like bacterial regulator
SCOP family Homodimeric domain of signal transducing histidine kinase
SCOP family Domain of the SRP/SRP receptor G-proteins
SCOP family Acyl-carrier protein (ACP)
SCOP family Ribosomal protein S15
SCOP family Acyl-CoA binding protein
SCOP family Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
SCOP family Ribosomal protein S20
SCOP family Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
SCOP family DNA-binding N-terminal domain of transcription activators
SCOP family Domains B1 and B5 of PheRS-beta, PheT
SCOP family DNA helicase RuvA subunit, C-terminal domain
SCOP family Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
SCOP family Ribosomal protein S18
SCOP family Ribosomal protein L11, C-terminal domain
SCOP family GerE-like (LuxR/UhpA family of transcriptional regulators)
SCOP family PhoB-like
SCOP family Helicase DNA-binding domain
SCOP family CAP C-terminal domain-like
SCOP family Methylated DNA-protein cysteine methyltransferase, C-terminal domain
SCOP family Tetracyclin repressor-like, N-terminal domain
SCOP family Di-heme cytochrome c peroxidase
SCOP family monodomain cytochrome c
SCOP family C-terminal UvrC-binding domain of UvrB
SCOP family Phenylalanyl-tRNA synthetase (PheRS)
SCOP family Seryl-tRNA synthetase (SerRS)
SCOP family Chaperone J-domain
SCOP family Ribosomal protein L29 (L29p)
SCOP family GreA transcript cleavage protein, N-terminal domain

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.