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Methanosphaera stadtmanae DSM 3091 superfamily assignments

Taxonomy
Taxonomy browser entry

Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanosphaera; Methanosphaera stadtmanae; Methanosphaera stadtmanae DSM 3091

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Fasta format sequences
Domain assignments


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Assignment statistics

Sequences: 1535 total
1044 (68 %) with assignment
322 average length
60 % amino acid coverage
Domains: 1501 total
475 unique superfamilies
280 unique families
284 average length
3.2 average superfamily size
68 % formed by duplication
Domain combinations: 258 domain pairs
620 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies

98 87 35 7 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
53 30 18 0 SCOP 51126 Pectin lyase-like
42 34 14 2 SCOP 53448 Nucleotide-diphospho-sugar transferases
42 42 20 7 SCOP 51735 NAD(P)-binding Rossmann-fold domains
31 27 14 0 SCOP 54862 4Fe-4S ferredoxins
27 21 16 2 SCOP 50249 Nucleic acid-binding proteins
24 23 5 1 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
24 6 6 0 SCOP 49464 Carboxypeptidase regulatory domain-like
23 23 12 1 SCOP 46785 "Winged helix" DNA-binding domain
22 22 5 5 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
19 19 6 0 SCOP 102114 Radical SAM enzymes
17 12 8 0 SCOP 55021 ACT-like
16 11 4 2 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
16 15 11 5 SCOP 54211 Ribosomal protein S5 domain 2-like
15 15 1 4 SCOP 53383 PLP-dependent transferases
15 15 7 1 SCOP 52402 Adenine nucleotide alpha hydrolases-like
14 14 9 2 SCOP 52374 Nucleotidylyl transferase
14 14 4 0 SCOP 52218 Flavoproteins
14 10 9 1 SCOP 54631 CBS-domain pair
13 13 7 1 SCOP 51905 FAD/NAD(P)-binding domain
12 12 6 1 SCOP 52317 Class I glutamine amidotransferase-like
11 10 9 3 SCOP 56059 Glutathione synthetase ATP-binding domain-like
11 11 11 2 SCOP 55681 Class II aaRS and biotin synthetases
10 10 7 2 SCOP 56784 HAD-like
10 9 7 2 SCOP 53067 Actin-like ATPase domain
9 9 4 3 SCOP 51569 Aldolase
9 9 2 4 SCOP 51366 Ribulose-phoshate binding barrel
9 9 3 0 SCOP 56300 Metallo-dependent phosphatases
9 9 4 3 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
8 8 5 3 SCOP 51556 Metallo-dependent hydrolases
8 8 2 0 SCOP 161098 MetI-like
8 8 2 2 SCOP 53613 Ribokinase-like
8 8 5 1 SCOP 53850 Periplasmic binding protein-like II
8 8 4 3 SCOP 56281 Metallo-hydrolase/oxidoreductase
8 7 6 0 SCOP 47781 RuvA domain 2-like
8 8 5 0 SCOP 46548 alpha-helical ferredoxin
8 8 2 2 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
7 7 2 1 SCOP 50475 FMN-binding split barrel
7 7 4 0 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
7 7 6 2 SCOP 50447 Translation proteins
7 5 2 1 SCOP 116734 DNA methylase specificity domain
7 6 3 0 SCOP 50346 PRC-barrel domain
7 7 4 1 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
7 7 6 0 SCOP 53623 MurD-like peptide ligases, catalytic domain
7 6 3 1 SCOP 56042 PurM C-terminal domain-like
7 6 3 1 SCOP 55326 PurM N-terminal domain-like
6 6 1 0 SCOP 57829 Zn-binding ribosomal proteins
6 6 2 1 SCOP 53790 Tetrapyrrole methylase
6 6 4 1 SCOP 50104 Translation proteins SH3-like domain
6 6 4 1 SCOP 51161 Trimeric LpxA-like enzymes
6 6 1 0 SCOP 47113 Histone-fold
6 5 4 0 SCOP 51338 Composite domain of metallo-dependent hydrolases
6 6 5 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
6 5 4 2 SCOP 52440 PreATP-grasp domain
6 5 5 0 SCOP 49373 Invasin/intimin cell-adhesion fragments
6 2 1 0 SCOP 53738 Phosphoglucomutase, first 3 domains
5 5 3 1 SCOP 53271 PRTase-like
5 5 5 3 SCOP 53098 Ribonuclease H-like
5 5 2 2 SCOP 53633 Carbamate kinase-like
5 4 3 0 SCOP 55811 Nudix
5 5 2 1 SCOP 51395 FMN-linked oxidoreductases
5 4 4 0 SCOP 46689 Homeodomain-like
5 5 1 0 SCOP 51726 UROD/MetE-like
5 5 4 3 SCOP 55931 Glutamine synthetase/guanido kinase
5 5 5 1 SCOP 52954 Class II aaRS ABD-related
5 5 5 0 SCOP 47413 lambda repressor-like DNA-binding domains
5 5 2 2 SCOP 52467 DHS-like NAD/FAD-binding domain
5 5 5 0 SCOP 88697 PUA domain-like
5 4 4 0 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
5 5 5 0 SCOP 81653 Calcium ATPase, transduction domain A
4 4 3 1 SCOP 53137 Translational machinery components
4 4 4 2 SCOP 55120 Pseudouridine synthase
4 4 4 1 SCOP 52980 Restriction endonuclease-like
4 4 1 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
4 4 3 0 SCOP 51430 NAD(P)-linked oxidoreductase
4 4 1 1 SCOP 56801 Acetyl-CoA synthetase-like
4 4 3 1 SCOP 55315 L30e-like
4 4 2 0 SCOP 55469 FMN-dependent nitroreductase-like
4 4 3 1 SCOP 88723 PIN domain-like
4 4 4 0 SCOP 54001 Cysteine proteinases
4 4 3 1 SCOP 51182 RmlC-like cupins
4 4 2 2 SCOP 52016 LeuD/IlvD-like
4 4 3 0 SCOP 57783 Zinc beta-ribbon
4 4 2 0 SCOP 89550 PHP domain-like
4 4 2 0 SCOP 52242 Cobalamin (vitamin B12)-binding domain
4 2 1 0 SCOP 53901 Thiolase-like
4 3 2 1 SCOP 56024 Phospholipase D/nuclease
4 4 4 1 SCOP 81665 Calcium ATPase, transmembrane domain M
4 3 3 1 SCOP 52210 Succinyl-CoA synthetase domains
4 4 2 0 SCOP 116726 TrkA C-terminal domain-like
4 4 2 0 SCOP 47644 Methionine synthase domain
4 2 1 1 SCOP 55112 Formylmethanofuran:tetrahydromethanopterin formyltransferase
3 3 2 1 SCOP 53474 alpha/beta-Hydrolases
3 3 3 0 SCOP 56112 Protein kinase-like (PK-like)
3 3 2 2 SCOP 53697 SIS domain
3 3 1 1 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
3 3 1 1 SCOP 55282 RL5-like
3 3 3 0 SCOP 46946 S13-like H2TH domain
3 3 2 0 SCOP 64182 DHH phosphoesterases
3 3 1 1 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
3 3 3 2 SCOP 75217 alpha/beta knot
3 3 2 2 SCOP 55821 YrdC/RibB
3 3 1 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
3 3 2 1 SCOP 48150 DNA-glycosylase
3 3 1 0 SCOP 56770 HydA/Nqo6-like
3 3 2 1 SCOP 109604 HD-domain/PDEase-like
3 3 2 0 SCOP 53649 Alkaline phosphatase-like
3 2 2 0 SCOP 53800 Chelatase
3 3 2 1 SCOP 52172 CheY-like
3 3 2 0 SCOP 54909 Dimeric alpha+beta barrel
3 2 2 1 SCOP 52255 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
3 3 2 1 SCOP 56349 DNA breaking-rejoining enzymes
3 3 3 0 SCOP 50692 ADC-like
3 3 2 1 SCOP 117782 YbjQ-like
3 3 3 1 SCOP 52507 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
3 3 2 1 SCOP 54913 GlnB-like
3 3 1 0 SCOP 56762 HydB/Nqo4-like
3 3 1 0 SCOP 53323 Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
3 3 2 0 SCOP 57802 Rubredoxin-like
3 3 3 0 SCOP 50037 C-terminal domain of transcriptional repressors
3 3 1 0 SCOP 53163 HybD-like
3 3 3 0 SCOP 53244 MurD-like peptide ligases, peptide-binding domain
3 2 2 0 SCOP 54980 EF-G C-terminal domain-like
3 3 2 0 SCOP 52922 TK C-terminal domain-like
3 2 2 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
3 3 2 2 SCOP 55088 Methyl-coenzyme M reductase subunits
3 3 3 0 SCOP 51984 MurCD N-terminal domain
3 2 2 1 SCOP 55945 TATA-box binding protein-like
3 3 2 0 SCOP 52413 UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
3 3 2 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
2 2 1 1 SCOP 81338 Aquaporin-like
2 2 1 0 SCOP 52833 Thioredoxin-like
2 2 2 1 SCOP 111331 NAD kinase/diacylglycerol kinase-like
2 2 1 1 SCOP 52080 Ribosomal proteins L15p and L18e
2 2 2 1 SCOP 55920 Creatinase/aminopeptidase
2 2 1 0 SCOP 89447 AbrB/MazE/MraZ-like
2 2 2 1 SCOP 47240 Ferritin-like
2 2 2 0 SCOP 110324 Ribosomal L27 protein-like
2 2 1 1 SCOP 51658 Xylose isomerase-like
2 2 2 2 SCOP 100950 NagB/RpiA/CoA transferase-like
2 2 2 0 SCOP 55174 Alpha-L RNA-binding motif
2 1 1 0 SCOP 81333 F1F0 ATP synthase subunit C
2 2 2 0 SCOP 109755 PhoU-like
2 2 1 1 SCOP 48557 L-aspartase-like
2 2 1 1 SCOP 111283 Putative modulator of DNA gyrase, PmbA/TldD
2 2 1 1 SCOP 51283 dUTPase-like
2 2 2 1 SCOP 51713 tRNA-guanine transglycosylase
2 2 2 0 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
2 2 1 0 SCOP 52121 Lumazine synthase
2 2 1 0 SCOP 48371 ARM repeat
2 2 2 0 SCOP 50182 Sm-like ribonucleoproteins
2 2 2 1 SCOP 56672 DNA/RNA polymerases
2 2 1 1 SCOP 46579 Prefoldin
2 2 1 0 SCOP 63393 RNA polymerase subunits
2 1 1 0 SCOP 54506 Diaminopimelate epimerase-like
2 2 2 0 SCOP 55257 RBP11-like subunits of RNA polymerase
2 1 1 0 SCOP 55008 HMA, heavy metal-associated domain
2 2 2 1 SCOP 52283 Formate/glycerate dehydrogenase catalytic domain-like
2 2 1 0 SCOP 81324 Voltage-gated potassium channels
2 2 2 0 SCOP 51717 Dihydropteroate synthetase-like
2 1 1 0 SCOP 46955 Putative DNA-binding domain
2 2 2 1 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
2 2 1 1 SCOP 53732 Aconitase iron-sulfur domain
2 2 1 0 SCOP 56219 DNase I-like
2 1 1 0 SCOP 50998 Quinoprotein alcohol dehydrogenase-like
2 2 2 0 SCOP 89095 GatB/YqeY motif
2 2 1 1 SCOP 144010 CofE-like
2 2 1 0 SCOP 143430 TTP0101/SSO1404-like
2 2 1 1 SCOP 161070 SNF-like
2 2 2 0 SCOP 143437 THUMP domain-like
2 2 1 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
2 2 1 0 SCOP 82866 Multidrug efflux transporter AcrB transmembrane domain
2 2 1 1 SCOP 48592 GroEL equatorial domain-like
2 2 1 0 SCOP 69336 Alpha subunit of glutamate synthase, C-terminal domain
2 1 1 0 SCOP 55979 DNA clamp
2 2 1 1 SCOP 53706 Formate dehydrogenase/DMSO reductase, domains 1-3
2 2 2 1 SCOP 51690 Nicotinate/Quinolinate PRTase C-terminal domain-like
2 2 2 1 SCOP 51246 Rudiment single hybrid motif
2 2 1 1 SCOP 142823 ComB-like
2 2 1 2 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
2 2 1 1 SCOP 51971 Nucleotide-binding domain
2 2 1 1 SCOP 53671 Aspartate/ornithine carbamoyltransferase
2 2 1 1 SCOP 52029 GroEL apical domain-like
2 2 2 0 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
2 2 2 0 SCOP 46600 C-terminal UvrC-binding domain of UvrB
2 2 1 0 SCOP 46934 UBA-like
2 2 1 0 SCOP 110921 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
2 1 1 1 SCOP 47954 Cyclin-like
2 2 1 0 SCOP 54373 FAD-linked reductases, C-terminal domain
2 1 1 1 SCOP 56053 Ribosomal protein L6
2 2 1 0 SCOP 55957 Phosphoglucomutase, C-terminal domain
2 2 2 0 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 1 0 SCOP 81271 TGS-like
2 1 1 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
2 2 1 1 SCOP 48081 Methyl-coenzyme M reductase alpha and beta chain C-terminal domain
2 2 1 0 SCOP 55666 Ribonuclease PH domain 2-like
2 2 2 0 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 1 0 SCOP 54849 GroEL-intermediate domain like
1 1 1 0 SCOP 56731 DNA primase core
1 1 1 1 SCOP 53167 Purine and uridine phosphorylases
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 1 SCOP 52141 Uracil-DNA glycosylase-like
1 1 1 1 SCOP 75304 Amidase signature (AS) enzymes
1 1 1 0 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54570 Ribosomal protein S19
1 1 1 1 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 1 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 0 SCOP 55831 Thymidylate synthase/dCMP hydroxymethylase
1 1 1 1 SCOP 53597 Dihydrofolate reductase-like
1 1 1 0 SCOP 103473 MFS general substrate transporter
1 1 1 1 SCOP 53748 Phosphoglycerate kinase
1 1 1 1 SCOP 82649 SufE/NifU
1 1 1 1 SCOP 50324 Inorganic pyrophosphatase
1 1 1 0 SCOP 160369 Ribosomal protein L10-like
1 1 1 1 SCOP 50129 GroES-like
1 1 1 1 SCOP 55068 Peptide methionine sulfoxide reductase
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 0 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 1 SCOP 51316 Mss4-like
1 1 1 1 SCOP 103263 Chorismate synthase, AroC
1 1 1 1 SCOP 53720 ALDH-like
1 1 1 0 SCOP 50715 Ribosomal protein L25-like
1 1 1 0 SCOP 48452 TPR-like
1 1 1 0 SCOP 54292 2Fe-2S ferredoxin-like
1 1 1 1 SCOP 51412 Inosine monophosphate dehydrogenase (IMPDH)
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 1 SCOP 64005 Undecaprenyl diphosphate synthase
1 1 1 0 SCOP 54285 MoaD/ThiS
1 1 1 1 SCOP 54637 Thioesterase/thiol ester dehydrase-isomerase
1 1 1 1 SCOP 56655 Carbohydrate phosphatase
1 1 1 1 SCOP 55205 EPT/RTPC-like
1 1 1 1 SCOP 48576 Terpenoid synthases
1 1 1 1 SCOP 55129 Ribosomal protein L30p/L7e
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 0 SCOP 56796 Dehydroquinate synthase-like
1 1 1 1 SCOP 51419 PLP-binding barrel
1 1 1 1 SCOP 53187 Zn-dependent exopeptidases
1 1 1 0 SCOP 49764 HSP20-like chaperones
1 1 1 1 SCOP 56104 SAICAR synthase-like
1 1 1 0 SCOP 89957 MTH1187/YkoF-like
1 1 1 1 SCOP 48140 Ribosomal protein L19 (L19e)
1 1 1 1 SCOP 52042 Ribosomal protein L32e
1 1 1 0 SCOP 54575 Ribosomal protein L31e
1 1 1 1 SCOP 69500 DTD-like
1 1 1 0 SCOP 103456 Preprotein translocase SecE subunit
1 1 1 1 SCOP 50891 Cyclophilin-like
1 1 1 0 SCOP 48317 Acid phosphatase/Vanadium-dependent haloperoxidase
1 1 1 1 SCOP 54534 FKBP-like
1 1 1 1 SCOP 56322 ADC synthase
1 1 1 0 SCOP 159468 AtpF-like
1 1 1 0 SCOP 55144 LigT-like
1 1 1 0 SCOP 51445 (Trans)glycosidases
1 1 1 0 SCOP 69572 Activating enzymes of the ubiquitin-like proteins
1 1 1 0 SCOP 144210 Nop10-like SnoRNP
1 1 1 0 SCOP 89895 FYSH domain
1 1 1 1 SCOP 53774 Glutaminase/Asparaginase
1 1 1 1 SCOP 56752 D-aminoacid aminotransferase-like PLP-dependent enzymes
1 1 1 0 SCOP 57997 Tropomyosin
1 1 1 1 SCOP 56317 Carbon-nitrogen hydrolase
1 1 1 0 SCOP 51306 LexA/Signal peptidase
1 1 1 0 SCOP 47819 HRDC-like
1 1 1 0 SCOP 53639 AraD/HMP-PK domain-like
1 1 1 1 SCOP 52972 ITPase-like
1 1 1 1 SCOP 54919 Nucleoside diphosphate kinase, NDK
1 1 1 0 SCOP 110849 ParB/Sulfiredoxin
1 1 1 0 SCOP 111126 Ligand-binding domain in the NO signalling and Golgi transport
1 1 1 0 SCOP 103486 V-type ATP synthase subunit C
1 1 1 0 SCOP 143870 PF0523-like
1 1 1 1 SCOP 53032 tRNA-intron endonuclease catalytic domain-like
1 1 1 0 SCOP 53056 beta-carbonic anhydrase, cab
1 1 1 1 SCOP 56529 FAH
1 1 1 1 SCOP 64153 YjeF N-terminal domain-like
1 1 1 0 SCOP 55159 eIF1-like
1 1 1 0 SCOP 46924 RNA polymerase subunit RPB10
1 1 1 0 SCOP 69618 HemD-like
1 1 1 1 SCOP 143447 AMMECR1-like
1 1 1 1 SCOP 52768 Arginase/deacetylase
1 1 1 1 SCOP 55909 Pentein
1 1 1 0 SCOP 63562 RPB6/omega subunit-like
1 1 1 1 SCOP 63965 Precorrin-8X methylmutase CbiC/CobH
1 1 1 0 SCOP 101960 Stabilizer of iron transporter SufD
1 1 1 0 SCOP 55620 Tetrahydrobiopterin biosynthesis enzymes-like
1 1 1 1 SCOP 141734 HisI-like
1 1 1 0 SCOP 101478 ADP-ribosylglycohydrolase
1 1 1 0 SCOP 49478 Cna protein B-type domain
1 1 1 1 SCOP 111038 YjbQ-like
1 1 1 1 SCOP 102405 MCP/YpsA-like
1 1 1 0 SCOP 103642 Sec-C motif
1 1 1 1 SCOP 51998 PFL-like glycyl radical enzymes
1 1 1 0 SCOP 102712 JAB1/MPN domain
1 1 1 0 SCOP 55724 Mog1p/PsbP-like
1 1 1 0 SCOP 47598 Ribbon-helix-helix
1 1 1 0 SCOP 143011 RelE-like
1 1 1 1 SCOP 111352 Ammonium transporter
1 1 1 0 SCOP 55331 Tautomerase/MIF
1 1 1 1 SCOP 142754 NadA-like
1 1 1 1 SCOP 56266 DmpA/ArgJ-like
1 1 1 0 SCOP 75712 Rad50 coiled-coil Zn hook
1 1 1 0 SCOP 82771 GIY-YIG endonuclease
1 1 1 1 SCOP 82697 PurS-like
1 1 1 0 SCOP 53807 "Helical backbone" metal receptor
1 1 1 0 SCOP 117916 Fe-S cluster assembly (FSCA) domain-like
1 1 1 0 SCOP 51230 Single hybrid motif
1 1 1 1 SCOP 51679 Bacterial luciferase-like
1 1 1 0 SCOP 46767 Methylated DNA-protein cysteine methyltransferase, C-terminal domain
1 1 1 0 SCOP 101744 Rof/RNase P subunit-like
1 1 1 0 SCOP 81301 Nucleotidyltransferase
1 1 1 1 SCOP 89733 L-sulfolactate dehydrogenase-like
1 1 1 1 SCOP 64167 SurE-like
1 1 1 0 SCOP 143990 YbiA-like
1 1 1 0 SCOP 55154 CYTH-like phosphatases
1 1 1 0 SCOP 161111 Cation efflux protein transmembrane domain-like
1 1 1 0 SCOP 102215 Creatininase
1 1 1 1 SCOP 103365 Hypothetical protein PH1602
1 1 1 0 SCOP 52733 Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
1 1 1 0 SCOP 54975 Acylphosphatase/BLUF domain-like
1 1 1 1 SCOP 51391 Thiamin phosphate synthase
1 1 1 0 SCOP 48600 Chorismate mutase II
1 1 1 0 SCOP 159664 CobE/GbiG C-terminal domain-like
1 1 1 0 SCOP 101386 all-alpha NTP pyrophosphatases
1 1 1 1 SCOP 56747 Prim-pol domain
1 1 1 1 SCOP 140478 LemA-like
1 1 1 0 SCOP 52335 Methylglyoxal synthase-like
1 1 1 0 SCOP 143631 ApbE-like
1 1 1 1 SCOP 56821 Prismane protein-like
1 1 1 1 SCOP 117457 FumA C-terminal domain-like
1 1 1 1 SCOP 142338 CofD-like
1 1 1 0 SCOP 159659 Cgl1923-like
1 1 1 0 SCOP 159127 HupF/HypC-like
1 1 1 0 SCOP 53146 Nitrogenase accessory factor-like
1 1 1 1 SCOP 51604 Enolase C-terminal domain-like
1 1 1 0 SCOP 75471 YhbY-like
1 1 1 1 SCOP 56271 Pyruvoyl-dependent histidine and arginine decarboxylases
1 1 1 0 SCOP 55136 Probable bacterial effector-binding domain
1 1 1 0 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
1 1 1 0 SCOP 89562 RraA-like
1 1 1 0 SCOP 52206 Hypothetical protein MTH538
1 1 1 0 SCOP 53933 Microbial ribonucleases
1 1 1 1 SCOP 56726 DNA topoisomerase IV, alpha subunit
1 1 1 0 SCOP 159672 CbiG N-terminal domain-like
1 1 1 0 SCOP 158791 MgtE N-terminal domain-like
1 1 1 1 SCOP 46565 Chaperone J-domain
1 1 1 0 SCOP 52038 Barstar-related
1 1 1 0 SCOP 82704 AlbA-like
1 1 1 0 SCOP 46950 Double-stranded DNA-binding domain
1 1 1 1 SCOP 89124 Nop domain
1 1 1 1 SCOP 111321 AF1104-like
1 1 1 0 SCOP 143560 MK0786-like
1 1 1 1 SCOP 111249 Sulfolobus fructose-1,6-bisphosphatase-like
1 1 1 0 SCOP 158436 Ta0600-like
1 1 1 0 SCOP 160350 Rnp2-like
1 1 1 1 SCOP 49367 Superoxide reductase-like
1 1 1 1 SCOP 54984 eEF-1beta-like
1 1 1 0 SCOP 55186 ThrRS/AlaRS common domain
1 1 1 1 SCOP 69819 MTH1598-like
1 1 1 0 SCOP 55287 RPB5-like RNA polymerase subunit
1 1 1 1 SCOP 52490 Tubulin nucleotide-binding domain-like
1 1 1 0 SCOP 116820 Rps17e-like
1 1 1 0 SCOP 160374 RplX-like
1 1 1 1 SCOP 102462 Peptidyl-tRNA hydrolase II
1 1 1 0 SCOP 158372 AF1782-like
1 1 1 0 SCOP 69695 SRP19
1 1 1 1 SCOP 160363 MTH889-like
1 1 1 0 SCOP 53092 Creatinase/prolidase N-terminal domain
1 1 1 0 SCOP 48498 Tetracyclin repressor-like, C-terminal domain
1 1 1 0 SCOP 50199 Staphylococcal nuclease
1 1 1 1 SCOP 69864 Argininosuccinate synthetase, C-terminal domain
1 1 1 0 SCOP 55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
1 1 1 0 SCOP 52343 Ferredoxin reductase-like, C-terminal NADP-linked domain
1 1 1 0 SCOP 46589 tRNA-binding arm
1 1 1 1 SCOP 158832 Tex N-terminal region-like
1 1 1 0 SCOP 50156 PDZ domain-like
1 1 1 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
1 1 1 0 SCOP 52200 Toll/Interleukin receptor TIR domain
1 1 1 0 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
1 1 1 0 SCOP 82114 Riboflavin kinase-like
1 1 1 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 1 SCOP 102645 CoaB-like
1 1 1 0 SCOP 56014 Nitrite and sulphite reductase 4Fe-4S domain-like
1 1 1 1 SCOP 102110 (2r)-phospho-3-sulfolactate synthase ComA
1 1 1 0 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 0 SCOP 48019 post-AAA+ oligomerization domain-like
1 1 1 0 SCOP 81573 F1F0 ATP synthase subunit B, membrane domain
1 1 1 0 SCOP 52009 Phosphohistidine domain
1 1 1 1 SCOP 102324 F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)
1 1 1 0 SCOP 111342 CbiD-like
1 1 1 0 SCOP 57903 FYVE/PHD zinc finger
1 1 1 1 SCOP 56199 Methenyltetrahydromethanopterin cyclohydrolase
1 1 1 0 SCOP 90257 Myosin rod fragments
1 1 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
1 1 1 0 SCOP 56037 PheT/TilS domain
1 1 1 1 SCOP 52418 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
1 1 1 0 SCOP 58014 Coiled-coil domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 63999 Thiamin pyrophosphokinase, catalytic domain
1 1 1 1 SCOP 55307 Tubulin C-terminal domain-like
1 1 1 1 SCOP 50621 Alanine racemase C-terminal domain-like
1 1 1 1 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
1 1 1 0 SCOP 143968 UbiD C-terminal domain-like
1 1 1 0 SCOP 52021 Carbamoyl phosphate synthetase, small subunit N-terminal domain
1 1 1 1 SCOP 54826 Enolase N-terminal domain-like
1 1 1 0 SCOP 55060 GHMP Kinase, C-terminal domain
1 1 1 0 SCOP 47979 Iron-dependent repressor protein, dimerization domain
1 1 1 0 SCOP 54810 GMP synthetase C-terminal dimerisation domain
1 1 1 1 SCOP 56425 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
1 1 1 0 SCOP 57825 Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
1 1 1 0 SCOP 81660 Metal cation-transporting ATPase, ATP-binding domain N
1 1 1 0 SCOP 143548 Serine metabolism enzymes domain
1 1 1 0 SCOP 46977 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
1 1 1 0 SCOP 63380 Riboflavin synthase domain-like
1 1 1 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
1 1 1 0 SCOP 81631 PAP/OAS1 substrate-binding domain
1 1 1 0 SCOP 160240 Cation efflux protein cytoplasmic domain-like
1 1 1 0 SCOP 47648 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
1 1 1 1 SCOP 56327 LDH C-terminal domain-like
1 1 1 0 SCOP 75500 Putative transcriptional regulator TM1602, C-terminal domain
1 1 1 1 SCOP 75569 Archaeal IMP cyclohydrolase PurO
1 1 1 0 SCOP 69075 Glutamyl tRNA-reductase dimerization domain
1 1 1 0 SCOP 75689 Zinc-binding domain of translation initiation factor 2 beta
1 1 1 1 SCOP 100966 Translation initiation factor 2 beta, aIF2beta, N-terminal domain
1 1 1 0 SCOP 54768 dsRNA-binding domain-like
1 1 1 0 SCOP 52113 BRCT domain
1 1 1 0 SCOP 47794 Rad51 N-terminal domain-like
1 1 1 0 SCOP 82861 Mechanosensitive channel protein MscS (YggB), transmembrane region
1 1 1 0 SCOP 158702 Sec63 N-terminal domain-like
1 1 1 0 SCOP 57821 Hypothetical protein MTH1184
1 1 1 1 SCOP 75412 Hypothetical protein MTH1880
1 1 1 0 SCOP 55124 Nitrite/Sulfite reductase N-terminal domain-like
1 1 1 0 SCOP 100934 Heat shock protein 70kD (HSP70), C-terminal subdomain
1 1 1 0 SCOP 54782 Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
1 1 1 1 SCOP 143975 IlvD/EDD N-terminal domain-like
1 1 1 0 SCOP 54675 Nicotinate/Quinolinate PRTase N-terminal domain-like
1 1 1 1 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
1 1 1 1 SCOP 47446 Signal peptide-binding domain
1 1 1 1 SCOP 56542 Substrate-binding domain of HMG-CoA reductase
1 1 1 0 SCOP 54991 Anticodon-binding domain of PheRS
1 1 1 0 SCOP 116742 eIF2alpha middle domain-like
1 1 1 0 SCOP 48108 Carbamoyl phosphate synthetase, large subunit connection domain
1 1 1 1 SCOP 55481 N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
1 1 1 0 SCOP 143724 PHP14-like
1 1 1 0 SCOP 88798 N-terminal, heterodimerisation domain of RBP7 (RpoE)
1 1 1 0 SCOP 54368 Glutamine synthetase, N-terminal domain
1 1 1 1 SCOP 55261 GAD domain-like
1 1 1 0 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 0 SCOP 117018 ATP-dependent DNA ligase DNA-binding domain
1 1 1 0 SCOP 69742 Glutamyl tRNA-reductase catalytic, N-terminal domain
1 1 1 0 SCOP 110993 eIF-2-alpha, C-terminal domain
1 1 1 0 SCOP 75615 Siroheme synthase middle domains-like
1 1 1 0 SCOP 160527 V-type ATPase subunit E-like
1 1 1 0 SCOP 159065 Dom34/Pelota N-terminal domain-like
1 1 1 1 SCOP 89000 post-HMGL domain-like
1 1 1 0 SCOP 88802 Pre-PUA domain
1 1 1 1 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 55003 PAP/Archaeal CCA-adding enzyme, C-terminal domain
1 1 1 0 SCOP 64586 C-terminal domain of ProRS
1 1 1 0 SCOP 51064 Head domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 54585 Cdc48 domain 2-like
1 1 1 1 SCOP 55035 NAD-binding domain of HMG-CoA reductase
1 1 1 1 SCOP 75445 D-ribose-5-phosphate isomerase (RpiA), lid domain
1 1 1 0 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 0 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 0 SCOP 101821 Aminopeptidase/glucanase lid domain
1 1 1 0 SCOP 54893 Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain
1 1 1 0 SCOP 140356 PPK N-terminal domain-like
1 1 1 0 SCOP 109728 Hypothetical protein AF0491, middle domain
1 1 1 0 SCOP 160996 HI0933 insert domain-like
1 1 1 0 SCOP 141300 GatD N-terminal domain-like
1 1 1 0 SCOP 57770 Methionyl-tRNA synthetase (MetRS), Zn-domain
1 1 1 0 SCOP 55267 tRNA-intron endonuclease N-terminal domain-like

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The following superfamilies have one or more weak hits:

SCOP superfamily Troponin coil-coiled subunits
SCOP superfamily Ran binding protein zinc finger-like
SCOP superfamily ABC transporter transmembrane region
SCOP superfamily YajQ-like
SCOP superfamily Zn-finger domain of Sec23/24
SCOP superfamily Mechanosensitive channel protein MscS (YggB), C-terminal domain
SCOP superfamily N-utilization substance G protein NusG, N-terminal domain
SCOP superfamily Plasmid maintenance system epsilon/zeta, antidote epsilon subunit
SCOP superfamily Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
SCOP superfamily Clc chloride channel
SCOP superfamily Family A G protein-coupled receptor-like
SCOP superfamily E set domains
SCOP superfamily Chemotaxis phosphatase CheZ
SCOP superfamily Cullin repeat-like
SCOP superfamily Cell wall binding repeat
SCOP superfamily SAP domain
SCOP superfamily SNARE-like
SCOP superfamily PTS-regulatory domain, PRD
SCOP superfamily BAG domain
SCOP superfamily Apolipoprotein A-I
SCOP superfamily Methyl-accepting chemotaxis protein (MCP) signaling domain
SCOP superfamily Influenza hemagglutinin (stalk)
SCOP superfamily SNARE fusion complex
SCOP superfamily Fibrinogen coiled-coil and central regions
SCOP superfamily ArfGap/RecO-like zinc finger
SCOP superfamily RING/U-box
SCOP superfamily Microbial and mitochondrial ADK, insert "zinc finger" domain
SCOP superfamily Leukocidin-like
SCOP superfamily Light-harvesting complex subunits
SCOP superfamily Colicin
SCOP superfamily Heme-dependent catalase-like
SCOP superfamily gp120 core
SCOP superfamily ADP-ribosylation
SCOP superfamily Homing endonucleases
SCOP superfamily Metalloproteases ("zincins"), catalytic domain
SCOP superfamily Ribosome recycling factor, RRF
SCOP superfamily Signal recognition particle alu RNA binding heterodimer, SRP9/14
SCOP superfamily Mitochondrial glycoprotein MAM33-like
SCOP superfamily MHC antigen-recognition domain
SCOP superfamily Superantigen toxins, C-terminal domain
SCOP superfamily CAD & PB1 domains
SCOP superfamily vWA-like
SCOP superfamily Phosphoglycerate mutase-like
SCOP superfamily ATP synthase (F1-ATPase), gamma subunit
SCOP superfamily SpoIIaa-like
SCOP superfamily Cobalamin (vitamin B12)-dependent enzymes
SCOP superfamily Hedgehog/intein (Hint) domain
SCOP superfamily PH domain-like
SCOP superfamily Concanavalin A-like lectins/glucanases
SCOP superfamily SMAD/FHA domain
SCOP superfamily Virus attachment protein globular domain
SCOP superfamily Starch-binding domain-like
SCOP superfamily Carbohydrate-binding domain
SCOP superfamily Immunoglobulin
SCOP superfamily Multiheme cytochromes
SCOP superfamily Sec7 domain
SCOP superfamily Ankyrin repeat
SCOP superfamily GTPase activation domain, GAP
SCOP superfamily DNA repair protein MutS, domain III
SCOP superfamily R1 subunit of ribonucleotide reductase, N-terminal domain
SCOP superfamily DBL homology domain (DH-domain)
SCOP superfamily NusB-like
SCOP superfamily lambda integrase-like, N-terminal domain
SCOP superfamily PAH2 domain
SCOP superfamily t-snare proteins
SCOP superfamily EF-hand
SCOP superfamily Smac/diablo
SCOP superfamily DNA polymerase III theta subunit-like
SCOP superfamily PspA lactotransferrin-binding region
SCOP superfamily CHY zinc finger-like
SCOP superfamily YfgJ-like
SCOP superfamily BT0923-like
SCOP superfamily YerB-like
SCOP superfamily EreA/ChaN-like
SCOP superfamily TM1646-like
SCOP superfamily NOB1 zinc finger-like
SCOP superfamily FdhE-like
SCOP superfamily FwdE-like
SCOP superfamily Glu-tRNAGln amidotransferase C subunit
SCOP superfamily PriB N-terminal domain-like
SCOP superfamily Hyaluronidase post-catalytic domain-like
SCOP superfamily EF2458-like
SCOP superfamily Proton glutamate symport protein
SCOP superfamily Vacuolar ATP synthase subunit C
SCOP superfamily CRISPR-associated protein
SCOP superfamily TrmE connector domain
SCOP superfamily Fzo-like conserved region
SCOP superfamily OmpH-like
SCOP superfamily Recombination protein RecR
SCOP superfamily Proline/betaine transporter ProP, C-terminal cytoplasmic domain
SCOP superfamily Multidrug resistance efflux transporter EmrE
SCOP superfamily Virulence-associated V antigen
SCOP superfamily TT1751-like
SCOP superfamily Hypothetical protein TT1725
SCOP superfamily Replicase NSP9

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