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  Home > Genomes > Superfamily assignments for Cryptococcus neoformans B-3501A


Cryptococcus neoformans B-3501A superfamily assignments

Taxonomy
Taxonomy browser entry

Eukaryota; Opisthokonta; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans; Cryptococcus neoformans var. neoformans; Cryptococcus neoformans var. neoformans B-3501A

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Fasta format sequences
Domain assignments

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Assignment statistics

Sequences: 6578 total
4184 (64 %) with assignment
542 average length
37 % amino acid coverage
Domains: 6030 total
827 unique superfamilies
593 unique families
316 average length
7.3 average superfamily size
86 % formed by duplication
Domain combinations: 562 domain pairs
1836 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies
407 323 93 11 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
212 197 9 0 SCOP 103473 MFS general substrate transporter
192 190 38 8 SCOP 51735 NAD(P)-binding Rossmann-fold domains
150 126 50 11 SCOP 48371 ARM repeat
122 116 34 1 SCOP 50978 WD40 repeat-like
117 115 30 2 SCOP 56112 Protein kinase-like (PK-like)
101 79 22 1 SCOP 54928 RNA-binding domain, RBD
95 95 5 0 SCOP 57701 Zn2/Cys6 DNA-binding domain
74 74 9 9 SCOP 53474 alpha/beta-Hydrolases
73 52 23 2 SCOP 48452 TPR-like
70 59 22 1 SCOP 57850 RING/U-box
68 68 9 9 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
63 56 17 4 SCOP 51905 FAD/NAD(P)-binding domain
61 44 26 5 SCOP 50249 Nucleic acid-binding proteins
59 30 16 5 SCOP 53067 Actin-like ATPase domain
56 51 27 0 SCOP 46785 "Winged helix" DNA-binding domain
53 49 13 2 SCOP 52833 Thioredoxin-like
48 47 19 4 SCOP 51445 (Trans)glycosidases
45 44 26 3 SCOP 50729 PH domain-like
43 43 6 3 SCOP 51197 Clavaminate synthase-like
42 41 9 5 SCOP 53383 PLP-dependent transferases
41 41 12 4 SCOP 56784 HAD-like
41 31 11 0 SCOP 57667 beta-beta-alpha zinc fingers
40 39 20 3 SCOP 53098 Ribonuclease H-like
40 40 17 4 SCOP 56672 DNA/RNA polymerases
38 37 7 1 SCOP 103506 Mitochondrial carrier
36 28 19 2 SCOP 54236 Ubiquitin-like
34 34 9 3 SCOP 53448 Nucleotide-diphospho-sugar transferases
34 33 15 5 SCOP 54001 Cysteine proteinases
32 31 23 7 SCOP 54211 Ribosomal protein S5 domain 2-like
32 28 18 0 SCOP 57903 FYVE/PHD zinc finger
31 24 17 0 SCOP 50044 SH3-domain
31 31 9 4 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
29 28 3 1 SCOP 50129 GroES-like
29 25 18 1 SCOP 47473 EF-hand
27 26 12 2 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
27 13 6 1 SCOP 47923 Ypt/Rab-GAP domain of gyp1p
26 20 10 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
26 26 12 1 SCOP 46565 Chaperone J-domain
26 15 5 0 SCOP 90123 ABC transporter transmembrane region
25 15 11 7 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
25 10 10 1 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
24 24 10 1 SCOP 54495 UBC-like
23 23 7 3 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
23 14 9 0 SCOP 47954 Cyclin-like
22 22 5 1 SCOP 47113 Histone-fold
22 22 6 2 SCOP 49899 Concanavalin A-like lectins/glucanases
22 14 11 0 SCOP 57756 Retrovirus zinc finger-like domains
21 20 14 4 SCOP 52374 Nucleotidylyl transferase
21 21 6 3 SCOP 56300 Metallo-dependent phosphatases
21 21 17 2 SCOP 55681 Class II aaRS and biotin synthetases
21 17 9 3 SCOP 52799 (Phosphotyrosine protein) phosphatases II
21 20 14 2 SCOP 50447 Translation proteins
20 16 7 1 SCOP 46689 Homeodomain-like
20 20 3 1 SCOP 51430 NAD(P)-linked oxidoreductase
20 17 16 3 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
20 18 6 2 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
20 20 12 0 SCOP 81383 F-box domain
20 13 10 0 SCOP 49562 C2 domain (Calcium/lipid-binding domain, CaLB)
19 19 9 1 SCOP 82199 SET domain
19 14 11 0 SCOP 51045 WW domain
18 17 7 6 SCOP 51569 Aldolase
18 16 9 2 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
18 18 5 1 SCOP 50182 Sm-like ribonucleoproteins
18 18 10 1 SCOP 48403 Ankyrin repeat
18 18 8 1 SCOP 50630 Acid proteases
18 17 13 0 SCOP 50998 Quinoprotein alcohol dehydrogenase-like
18 17 17 0 SCOP 46934 UBA-like
17 16 5 2 SCOP 56281 Metallo-hydrolase/oxidoreductase
17 17 6 1 SCOP 51395 FMN-linked oxidoreductases
17 17 8 3 SCOP 64356 SNARE-like
17 17 10 0 SCOP 55856 Cytochrome b5-like heme/steroid binding domain
17 15 5 0 SCOP 103481 Multidrug resistance efflux transporter EmrE
17 13 9 0 SCOP 52113 BRCT domain
17 17 4 0 SCOP 57959 Leucine zipper domain
16 16 13 1 SCOP 52317 Class I glutamine amidotransferase-like
16 16 5 2 SCOP 53720 ALDH-like
16 11 7 1 SCOP 54637 Thioesterase/thiol ester dehydrase-isomerase
16 16 7 2 SCOP 53254 Phosphoglycerate mutase-like
16 15 4 4 SCOP 51182 RmlC-like cupins
16 16 8 2 SCOP 54373 FAD-linked reductases, C-terminal domain
16 15 9 1 SCOP 48065 DBL homology domain (DH-domain)
16 14 12 0 SCOP 54160 Chromo domain-like
16 12 7 0 SCOP 90229 CCCH zinc finger
15 15 10 8 SCOP 51556 Metallo-dependent hydrolases
15 15 12 2 SCOP 52402 Adenine nucleotide alpha hydrolases-like
15 15 9 3 SCOP 53187 Zn-dependent exopeptidases
15 15 7 1 SCOP 52047 RNI-like
15 5 3 0 SCOP 49503 Cupredoxins
15 11 9 1 SCOP 47370 Bromodomain
14 13 11 0 SCOP 103657 BAR/IMD domain-like
14 14 10 1 SCOP 81296 E set domains
14 14 6 4 SCOP 48208 Six-hairpin glycosidases
14 14 3 2 SCOP 52283 Formate/glycerate dehydrogenase catalytic domain-like
14 5 4 1 SCOP 63411 LuxS/MPP-like metallohydrolase
14 14 8 0 SCOP 52343 Ferredoxin reductase-like, C-terminal NADP-linked domain
14 13 9 2 SCOP 63380 Riboflavin synthase domain-like
14 14 12 2 SCOP 48350 GTPase activation domain, GAP
14 13 5 1 SCOP 81653 Calcium ATPase, transduction domain A
13 11 11 3 SCOP 56059 Glutathione synthetase ATP-binding domain-like
13 13 6 1 SCOP 53927 Cytidine deaminase-like
13 13 6 0 SCOP 55811 Nudix
13 13 7 1 SCOP 50891 Cyclophilin-like
13 11 8 0 SCOP 52058 L domain-like
13 13 5 1 SCOP 81665 Calcium ATPase, transmembrane domain M
12 10 6 2 SCOP 54197 HIT-like
12 12 8 1 SCOP 88723 PIN domain-like
12 12 3 0 SCOP 52266 SGNH hydrolase
12 12 8 1 SCOP 64268 PX domain
12 10 10 0 SCOP 52172 CheY-like
12 6 2 1 SCOP 53901 Thiolase-like
12 6 6 0 SCOP 56024 Phospholipase D/nuclease
12 6 4 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
12 4 4 0 SCOP 81698 FF domain
11 11 7 1 SCOP 50104 Translation proteins SH3-like domain
11 11 7 1 SCOP 55920 Creatinase/aminopeptidase
11 10 6 4 SCOP 100950 NagB/RpiA/CoA transferase-like
11 10 9 3 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
11 9 5 3 SCOP 52096 ClpP/crotonase
11 9 5 1 SCOP 47095 HMG-box
11 11 6 1 SCOP 56801 Acetyl-CoA synthetase-like
11 11 10 1 SCOP 53300 vWA-like
11 11 5 1 SCOP 56219 DNase I-like
11 8 7 2 SCOP 52777 CoA-dependent acyltransferases
11 11 7 0 SCOP 47616 GST C-terminal domain-like
11 11 7 1 SCOP 48464 ENTH/VHS domain
10 10 6 3 SCOP 53613 Ribokinase-like
10 10 3 4 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
10 9 7 0 SCOP 58038 SNARE fusion complex
10 9 4 1 SCOP 50475 FMN-binding split barrel
10 9 4 1 SCOP 69572 Activating enzymes of the ubiquitin-like proteins
10 8 7 1 SCOP 54631 CBS-domain pair
10 4 3 0 SCOP 82153 FAS1 domain
10 9 7 1 SCOP 51338 Composite domain of metallo-dependent hydrolases
10 5 5 1 SCOP 54980 EF-G C-terminal domain-like
10 8 8 1 SCOP 52440 PreATP-grasp domain
10 10 2 2 SCOP 52029 GroEL apical domain-like
10 10 3 1 SCOP 81660 Metal cation-transporting ATPase, ATP-binding domain N
10 10 2 0 SCOP 54849 GroEL-intermediate domain like
9 9 5 2 SCOP 53271 PRTase-like
9 9 6 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
9 8 2 1 SCOP 55298 YjgF-like
9 9 5 0 SCOP 57997 Tropomyosin
9 8 7 0 SCOP 54695 POZ domain
9 9 3 2 SCOP 52768 Arginase/deacetylase
9 8 2 0 SCOP 54909 Dimeric alpha+beta barrel
9 8 7 0 SCOP 57783 Zinc beta-ribbon
9 6 4 0 SCOP 81901 HCP-like
9 9 5 4 SCOP 52467 DHS-like NAD/FAD-binding domain
9 9 7 0 SCOP 49879 SMAD/FHA domain
9 8 8 0 SCOP 55785 PYP-like sensor domain (PAS domain)
9 9 1 1 SCOP 48592 GroEL equatorial domain-like
9 7 7 0 SCOP 47384 Homodimeric domain of signal transducing histidine kinase
9 9 5 0 SCOP 51011 Glycosyl hydrolase domain
8 7 5 1 SCOP 81606 PP2C-like
8 7 5 5 SCOP 51366 Ribulose-phoshate binding barrel
8 8 1 1 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
8 7 6 1 SCOP 52821 Rhodanese/Cell cycle control phosphatase
8 7 6 2 SCOP 56104 SAICAR synthase-like
8 7 6 2 SCOP 49785 Galactose-binding domain-like
8 8 8 1 SCOP 51230 Single hybrid motif
8 8 7 2 SCOP 81301 Nucleotidyltransferase
8 8 7 4 SCOP 88697 PUA domain-like
8 8 6 1 SCOP 82171 DPP6 N-terminal domain-like
8 7 4 2 SCOP 47203 Acyl-CoA dehydrogenase C-terminal domain-like
8 8 5 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
8 8 6 3 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
8 8 5 2 SCOP 52922 TK C-terminal domain-like
8 8 2 0 SCOP 47459 HLH, helix-loop-helix DNA-binding domain
8 7 5 0 SCOP 100934 Heat shock protein 70kD (HSP70), C-terminal subdomain
8 8 5 1 SCOP 74788 Cullin repeat-like
7 7 3 0 SCOP 50685 Barwin-like endoglucanases
7 6 4 2 SCOP 48576 Terpenoid synthases
7 7 6 0 SCOP 50985 RCC1/BLIP-II
7 7 2 2 SCOP 109604 HD-domain/PDEase-like
7 7 5 2 SCOP 55315 L30e-like
7 7 5 3 SCOP 54427 NTF2-like
7 7 5 0 SCOP 144091 Rhomboid-like
7 7 4 0 SCOP 52954 Class II aaRS ABD-related
7 4 3 0 SCOP 81324 Voltage-gated potassium channels
7 7 2 1 SCOP 52016 LeuD/IlvD-like
7 5 5 0 SCOP 69065 RNase III domain-like
7 7 4 2 SCOP 56645 Acyl-CoA dehydrogenase NM domain-like
7 7 3 2 SCOP 48019 post-AAA+ oligomerization domain-like
7 6 4 0 SCOP 50965 Galactose oxidase, central domain
7 6 4 0 SCOP 51971 Nucleotide-binding domain
7 7 5 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
7 2 2 1 SCOP 53738 Phosphoglucomutase, first 3 domains
6 6 3 1 SCOP 55120 Pseudouridine synthase
6 6 3 0 SCOP 69593 Glycerol-3-phosphate (1)-acyltransferase
6 6 5 0 SCOP 52218 Flavoproteins
6 6 2 1 SCOP 51658 Xylose isomerase-like
6 6 5 1 SCOP 51695 PLC-like phosphodiesterases
6 6 3 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
6 6 2 1 SCOP 51161 Trimeric LpxA-like enzymes
6 6 3 0 SCOP 49764 HSP20-like chaperones
6 6 4 0 SCOP 63829 Calcium-dependent phosphotriesterase
6 5 3 1 SCOP 55753 Actin depolymerizing proteins
6 6 2 0 SCOP 46579 Prefoldin
6 6 5 0 SCOP 74650 Galactose mutarotase-like
6 6 4 2 SCOP 56317 Carbon-nitrogen hydrolase
6 5 5 1 SCOP 55781 GAF domain-like
6 4 3 0 SCOP 55961 Bet v1-like
6 5 5 0 SCOP 52151 FabD/lysophospholipase-like
6 3 3 1 SCOP 51206 cAMP-binding domain-like
6 5 4 0 SCOP 161111 Cation efflux protein transmembrane domain-like
6 4 4 0 SCOP 55021 ACT-like
6 6 2 0 SCOP 69322 Tricorn protease domain 2
6 6 6 2 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
6 6 2 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
6 2 2 0 SCOP 50199 Staphylococcal nuclease
6 6 3 1 SCOP 47661 t-snare proteins
6 6 5 0 SCOP 48334 DNA repair protein MutS, domain III
6 6 4 1 SCOP 54826 Enolase N-terminal domain-like
6 6 4 1 SCOP 55060 GHMP Kinase, C-terminal domain
6 6 5 1 SCOP 54768 dsRNA-binding domain-like
6 6 2 0 SCOP 55031 Bacterial exopeptidase dimerisation domain
5 5 3 0 SCOP 57829 Zn-binding ribosomal proteins
5 5 3 0 SCOP 111331 NAD kinase/diacylglycerol kinase-like
5 5 5 1 SCOP 53137 Translational machinery components
5 5 4 1 SCOP 47240 Ferritin-like
5 4 4 1 SCOP 53633 Carbamate kinase-like
5 5 1 1 SCOP 51316 Mss4-like
5 5 2 0 SCOP 48317 Acid phosphatase/Vanadium-dependent haloperoxidase
5 5 4 1 SCOP 53649 Alkaline phosphatase-like
5 4 3 2 SCOP 48239 Terpenoid cyclases/Protein prenyltransferases
5 5 4 0 SCOP 88713 Glycoside hydrolase/deacetylase
5 5 2 1 SCOP 48264 Cytochrome P450
5 5 1 1 SCOP 53732 Aconitase iron-sulfur domain
5 5 3 2 SCOP 51604 Enolase C-terminal domain-like
5 5 5 1 SCOP 51246 Rudiment single hybrid motif
5 5 3 1 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
5 5 5 0 SCOP 50370 Ricin B-like lectins
5 4 3 0 SCOP 117281 Kelch motif
5 5 4 0 SCOP 55658 L9 N-domain-like
5 5 3 0 SCOP 57863 ArfGap/RecO-like zinc finger
5 4 4 1 SCOP 158702 Sec63 N-terminal domain-like
5 3 2 0 SCOP 118310 AN1-like Zinc finger
5 5 5 0 SCOP 74924 Cap-Gly domain
5 5 4 1 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
5 5 4 0 SCOP 54277 CAD & PB1 domains
5 5 3 1 SCOP 52087 CRAL/TRIO domain
5 4 4 0 SCOP 57889 Cysteine-rich domain
5 5 4 1 SCOP 48425 Sec7 domain
5 5 2 0 SCOP 55666 Ribonuclease PH domain 2-like
4 4 2 1 SCOP 75304 Amidase signature (AS) enzymes
4 4 2 1 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
4 4 2 0 SCOP 46946 S13-like H2TH domain
4 3 3 0 SCOP 56214 4'-phosphopantetheinyl transferase
4 4 3 0 SCOP 47336 ACP-like
4 4 3 0 SCOP 55174 Alpha-L RNA-binding motif
4 3 2 0 SCOP 81333 F1F0 ATP synthase subunit C
4 4 2 1 SCOP 51730 FAD-linked oxidoreductase
4 4 4 0 SCOP 54862 4Fe-4S ferredoxins
4 4 3 1 SCOP 48150 DNA-glycosylase
4 4 4 0 SCOP 54292 2Fe-2S ferredoxin-like
4 4 3 1 SCOP 51412 Inosine monophosphate dehydrogenase (IMPDH)
4 4 1 1 SCOP 56655 Carbohydrate phosphatase
4 4 2 0 SCOP 144122 Tim10-like
4 4 3 0 SCOP 81321 Family A G protein-coupled receptor-like
4 4 3 1 SCOP 56815 Sec1/munc18-like (SM) proteins
4 4 3 1 SCOP 56634 Heme-dependent catalase-like
4 3 3 1 SCOP 53328 Formyltransferase
4 4 3 1 SCOP 54534 FKBP-like
4 4 3 0 SCOP 47027 Acyl-CoA binding protein
4 4 3 1 SCOP 144000 Oxysterol-binding protein-like
4 4 4 0 SCOP 47819 HRDC-like
4 4 3 0 SCOP 51126 Pectin lyase-like
4 4 4 0 SCOP 55257 RBP11-like subunits of RNA polymerase
4 4 3 1 SCOP 55418 eIF4e-like
4 4 4 1 SCOP 47576 Calponin-homology domain, CH-domain
4 3 3 2 SCOP 55620 Tetrahydrobiopterin biosynthesis enzymes-like
4 4 4 1 SCOP 55931 Glutamine synthetase/guanido kinase
4 4 2 1 SCOP 56349 DNA breaking-rejoining enzymes
4 4 4 0 SCOP 50969 YVTN repeat-like/Quinoprotein amine dehydrogenase
4 3 3 0 SCOP 47781 RuvA domain 2-like
4 4 1 1 SCOP 52490 Tubulin nucleotide-binding domain-like
4 4 2 0 SCOP 53092 Creatinase/prolidase N-terminal domain
4 3 2 1 SCOP 55979 DNA clamp
4 4 2 0 SCOP 56176 FAD-binding/transporter-associated domain-like
4 1 1 0 SCOP 58104 Methyl-accepting chemotaxis protein (MCP) signaling domain
4 4 1 1 SCOP 55307 Tubulin C-terminal domain-like
4 4 4 0 SCOP 68906 SAP domain
4 4 3 1 SCOP 81631 PAP/OAS1 substrate-binding domain
4 4 3 0 SCOP 160240 Cation efflux protein cytoplasmic domain-like
4 2 1 0 SCOP 56053 Ribosomal protein L6
4 4 2 0 SCOP 46938 CRAL/TRIO N-terminal domain
4 4 2 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
4 4 3 1 SCOP 81271 TGS-like
4 4 3 0 SCOP 158573 GINS helical bundle-like
4 4 4 0 SCOP 47769 SAM/Pointed domain
4 4 4 1 SCOP 56204 Hect, E3 ligase catalytic domain
4 4 3 0 SCOP 48097 Regulator of G-protein signaling, RGS
4 3 3 0 SCOP 49599 TRAF domain-like
4 4 4 1 SCOP 52025 PA domain
4 4 2 1 SCOP 75632 Cullin homology domain
4 4 3 0 SCOP 50911 Mannose 6-phosphate receptor domain
4 4 4 0 SCOP 75553 Smc hinge domain
4 4 3 0 SCOP 89009 GAT-like domain
3 2 2 1 SCOP 53790 Tetrapyrrole methylase
3 3 3 0 SCOP 56808 Ribosomal protein L1
3 3 3 0 SCOP 52080 Ribosomal proteins L15p and L18e
3 1 1 1 SCOP 53784 Phosphofructokinase
3 3 3 1 SCOP 75620 Release factor
3 3 3 1 SCOP 52980 Restriction endonuclease-like
3 3 2 0 SCOP 160369 Ribosomal protein L10-like
3 3 3 1 SCOP 53850 Periplasmic binding protein-like II
3 3 1 1 SCOP 48557 L-aspartase-like
3 3 3 1 SCOP 55821 YrdC/RibB
3 3 3 1 SCOP 102114 Radical SAM enzymes
3 2 2 1 SCOP 142695 RibA-like
3 3 2 0 SCOP 82657 BolA-like
3 3 3 2 SCOP 51419 PLP-binding barrel
3 3 3 0 SCOP 48613 Heme oxygenase-like
3 2 2 2 SCOP 51726 UROD/MetE-like
3 3 2 1 SCOP 52499 Isochorismatase-like hydrolases
3 3 3 1 SCOP 56752 D-aminoacid aminotransferase-like PLP-dependent enzymes
3 3 2 1 SCOP 56019 The spindle assembly checkpoint protein mad2
3 3 2 0 SCOP 51306 LexA/Signal peptidase
3 2 2 1 SCOP 69645 Arp2/3 complex subunits
3 3 3 1 SCOP 111126 Ligand-binding domain in the NO signalling and Golgi transport
3 3 2 0 SCOP 47072 Cysteine alpha-hairpin motif
3 3 3 0 SCOP 53032 tRNA-intron endonuclease catalytic domain-like
3 3 2 1 SCOP 56529 FAH
3 3 3 0 SCOP 55159 eIF1-like
3 3 3 0 SCOP 55008 HMA, heavy metal-associated domain
3 3 2 0 SCOP 52091 SpoIIaa-like
3 2 2 0 SCOP 46955 Putative DNA-binding domain
3 3 3 1 SCOP 50022 ISP domain
3 3 3 0 SCOP 50692 ADC-like
3 2 2 0 SCOP 89095 GatB/YqeY motif
3 3 3 1 SCOP 103025 Folate-binding domain
3 3 3 1 SCOP 52335 Methylglyoxal synthase-like
3 3 1 0 SCOP 75011 3-carboxy-cis,cis-mucoante lactonizing enzyme
3 3 3 0 SCOP 47592 SWIB/MDM2 domain
3 3 1 1 SCOP 89124 Nop domain
3 3 3 0 SCOP 55186 ThrRS/AlaRS common domain
3 3 2 1 SCOP 55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
3 3 3 1 SCOP 52743 Subtilisin-like
3 2 2 0 SCOP 82866 Multidrug efflux transporter AcrB transmembrane domain
3 3 3 0 SCOP 143865 CorA soluble domain-like
3 3 1 0 SCOP 55103 FAD-linked oxidases, C-terminal domain
3 3 2 0 SCOP 48230 Chondroitin AC/alginate lyase
3 2 2 0 SCOP 54106 LysM domain
3 1 1 0 SCOP 49313 Cadherin-like
3 3 3 0 SCOP 81995 beta-sandwich domain of Sec23/24
3 1 1 1 SCOP 55973 S-adenosylmethionine synthetase
3 3 3 1 SCOP 52210 Succinyl-CoA synthetase domains
3 3 3 1 SCOP 48225 Seven-hairpin glycosidases
3 2 2 1 SCOP 56042 PurM C-terminal domain-like
3 3 3 0 SCOP 52279 Beta-D-glucan exohydrolase, C-terminal domain
3 3 3 1 SCOP 63737 Leukotriene A4 hydrolase N-terminal domain
3 3 3 1 SCOP 54616 DNA-binding domain of Mlu1-box binding protein MBP1
3 2 2 1 SCOP 55326 PurM N-terminal domain-like
3 3 2 0 SCOP 100879 Lesion bypass DNA polymerase (Y-family), little finger domain
3 2 2 1 SCOP 55945 TATA-box binding protein-like
3 3 3 0 SCOP 144232 HIT/MYND zinc finger-like
3 3 1 0 SCOP 47794 Rad51 N-terminal domain-like
3 3 3 1 SCOP 48366 Ras GEF
3 3 1 0 SCOP 117892 Band 7/SPFH domain
3 3 3 0 SCOP 63748 Tudor/PWWP/MBT
3 3 3 1 SCOP 49348 Clathrin adaptor appendage domain
3 3 2 1 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
3 3 3 0 SCOP 82708 R3H domain
3 3 3 0 SCOP 55271 DNA repair protein MutS, domain I
3 3 2 1 SCOP 101152 Mob1/phocein
3 3 1 0 SCOP 47895 Transducin (alpha subunit), insertion domain
3 3 1 0 SCOP 82109 MIR domain
3 3 2 0 SCOP 116846 MIT domain
3 3 2 0 SCOP 69012 alpha-ketoacid dehydrogenase kinase, N-terminal domain
3 2 2 0 SCOP 109905 Surp module (SWAP domain)
3 3 3 1 SCOP 82754 C-terminal, gelsolin-like domain of Sec23/24
3 3 1 1 SCOP 49447 Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
3 3 3 0 SCOP 63491 BAG domain
3 1 1 0 SCOP 47762 PAH2 domain
3 3 2 0 SCOP 103243 KA1-like
3 3 2 1 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
3 1 1 0 SCOP 49758 Calpain large subunit, middle domain (domain III)
3 3 3 1 SCOP 54585 Cdc48 domain 2-like
3 3 3 0 SCOP 47005 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
3 3 3 1 SCOP 81811 Helical domain of Sec23/24
3 3 3 1 SCOP 82919 Zn-finger domain of Sec23/24
3 3 3 0 SCOP 53150 DNA repair protein MutS, domain II
2 2 2 1 SCOP 52141 Uracil-DNA glycosylase-like
2 2 2 2 SCOP 53697 SIS domain
2 2 2 0 SCOP 54999 Ribosomal protein S10
2 2 2 1 SCOP 52166 Ribosomal protein L4
2 2 2 0 SCOP 54570 Ribosomal protein S19
2 2 2 0 SCOP 54843 Ribosomal protein L22
2 2 1 2 SCOP 54686 Ribosomal protein L16p/L10e
2 2 1 1 SCOP 50193 Ribosomal protein L14
2 2 2 1 SCOP 55282 RL5-like
2 2 2 1 SCOP 53597 Dihydrofolate reductase-like
2 2 2 0 SCOP 110324 Ribosomal L27 protein-like
2 2 1 1 SCOP 82549 DAK1/DegV-like
2 2 2 1 SCOP 52161 Ribosomal protein L13
2 2 1 0 SCOP 47060 S15/NS1 RNA-binding domain
2 2 2 1 SCOP 51283 dUTPase-like
2 2 1 0 SCOP 89360 HesB-like domain
2 2 2 1 SCOP 50715 Ribosomal protein L25-like
2 2 2 1 SCOP 52313 Ribosomal protein S2
2 2 2 1 SCOP 64005 Undecaprenyl diphosphate synthase
2 2 2 0 SCOP 101908 Putative isomerase YbhE
2 2 2 1 SCOP 55205 EPT/RTPC-like
2 2 2 0 SCOP 46561 Ribosomal protein L29 (L29p)
2 2 2 1 SCOP 56796 Dehydroquinate synthase-like
2 2 2 1 SCOP 48256 Citrate synthase
2 1 1 0 SCOP 110296 Oligoxyloglucan reducing end-specific cellobiohydrolase
2 2 1 0 SCOP 54762 Signal recognition particle alu RNA binding heterodimer, SRP9/14
2 2 2 2 SCOP 46626 Cytochrome c
2 2 2 1 SCOP 56322 ADC synthase
2 2 1 1 SCOP 57798 Casein kinase II beta subunit
2 2 2 0 SCOP 89895 FYSH domain
2 2 2 0 SCOP 54897 Protease propeptides/inhibitors
2 2 2 2 SCOP 90096 Subunits of heterodimeric actin filament capping protein Capz
2 2 1 1 SCOP 48439 Protein prenylyltransferase
2 2 2 1 SCOP 52972 ITPase-like
2 2 2 1 SCOP 49329 Cu,Zn superoxide dismutase-like
2 2 2 1 SCOP 54919 Nucleoside diphosphate kinase, NDK
2 2 1 1 SCOP 48113 Heme-dependent peroxidases
2 2 2 0 SCOP 47694 Cytochrome c oxidase subunit h
2 2 2 0 SCOP 81343 Fumarate reductase respiratory complex transmembrane subunits
2 2 2 0 SCOP 49777 PEBP-like
2 2 1 1 SCOP 53056 beta-carbonic anhydrase, cab
2 2 2 1 SCOP 143113 NAP-like
2 1 1 0 SCOP 56399 ADP-ribosylation
2 2 1 0 SCOP 161084 MAPEG domain-like
2 2 1 0 SCOP 102712 JAB1/MPN domain
2 2 2 1 SCOP 54593 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
2 2 1 1 SCOP 111352 Ammonium transporter
2 2 2 0 SCOP 47413 lambda repressor-like DNA-binding domains
2 2 2 1 SCOP 117916 Fe-S cluster assembly (FSCA) domain-like
2 2 1 1 SCOP 52507 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
2 2 2 1 SCOP 81340 Clc chloride channel
2 2 1 1 SCOP 50800 PK beta-barrel domain-like
2 2 1 0 SCOP 50993 Peptidase/esterase 'gauge' domain
2 2 2 0 SCOP 54518 Tubby C-terminal domain-like
2 2 1 0 SCOP 101473 DhaL-like
2 2 2 1 SCOP 100939 SPOC domain-like
2 2 2 0 SCOP 49452 Starch-binding domain-like
2 2 1 0 SCOP 89562 RraA-like
2 2 1 1 SCOP 74784 Translin
2 2 1 0 SCOP 111321 AF1104-like
2 2 2 1 SCOP 46548 alpha-helical ferredoxin
2 2 2 1 SCOP 102462 Peptidyl-tRNA hydrolase II
2 2 2 0 SCOP 46589 tRNA-binding arm
2 2 2 0 SCOP 53244 MurD-like peptide ligases, peptide-binding domain
2 2 2 0 SCOP 50156 PDZ domain-like
2 2 1 2 SCOP 51690 Nicotinate/Quinolinate PRTase C-terminal domain-like
2 1 1 0 SCOP 69318 Integrin alpha N-terminal domain
2 2 1 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
2 2 1 0 SCOP 160443 SMR domain-like
2 1 1 1 SCOP 56014 Nitrite and sulphite reductase 4Fe-4S domain-like
2 2 1 1 SCOP 52935 PK C-terminal domain-like
2 2 2 0 SCOP 118116 DNA mismatch repair protein MutL
2 2 1 0 SCOP 52129 Caspase-like
2 2 2 0 SCOP 90257 Myosin rod fragments
2 2 1 0 SCOP 160059 PriA/YqbF domain
2 2 1 0 SCOP 55816 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
2 1 1 0 SCOP 161093 MgtE membrane domain-like
2 2 2 1 SCOP 140990 FtsH protease domain-like
2 2 2 1 SCOP 53671 Aspartate/ornithine carbamoyltransferase
2 2 2 1 SCOP 54719 Fe,Mn superoxide dismutase (SOD), C-terminal domain
2 2 2 0 SCOP 81585 PsbU/PolX domain-like
2 2 2 1 SCOP 52021 Carbamoyl phosphate synthetase, small subunit N-terminal domain
2 2 2 1 SCOP 53623 MurD-like peptide ligases, catalytic domain
2 2 2 1 SCOP 49870 Osmotin, thaumatin-like protein
2 2 1 0 SCOP 52075 Outer arm dynein light chain 1
2 2 2 1 SCOP 56425 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
2 2 2 0 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
2 2 2 0 SCOP 90002 Hypothetical protein YjiA, C-terminal domain
2 2 2 0 SCOP 144083 Magnesium transport protein CorA, transmembrane region
2 2 1 1 SCOP 56327 LDH C-terminal domain-like
2 2 1 0 SCOP 117289 Nucleoporin domain
2 2 2 1 SCOP 49998 Amine oxidase catalytic domain
2 2 2 0 SCOP 75689 Zinc-binding domain of translation initiation factor 2 beta
2 2 2 0 SCOP 100966 Translation initiation factor 2 beta, aIF2beta, N-terminal domain
2 2 1 1 SCOP 55637 Cell cycle regulatory proteins
2 1 1 0 SCOP 55124 Nitrite/Sulfite reductase N-terminal domain-like
2 2 1 0 SCOP 81624 N-terminal domain of MutM-like DNA repair proteins
2 2 2 0 SCOP 55545 beta-N-acetylhexosaminidase-like domain
2 2 2 1 SCOP 55957 Phosphoglucomutase, C-terminal domain
2 2 1 1 SCOP 143975 IlvD/EDD N-terminal domain-like
2 2 1 0 SCOP 101576 Supernatant protein factor (SPF), C-terminal domain
2 2 1 0 SCOP 54675 Nicotinate/Quinolinate PRTase N-terminal domain-like
2 2 2 0 SCOP 144284 Sec2 N-terminal region
2 1 1 0 SCOP 57184 Growth factor receptor domain
2 2 2 0 SCOP 48108 Carbamoyl phosphate synthetase, large subunit connection domain
2 2 2 0 SCOP 49417 p53-like transcription factors
2 2 2 1 SCOP 69000 FAD-dependent thiol oxidase
2 2 2 0 SCOP 46774 ARID-like
2 2 2 1 SCOP 55455 SRF-like
2 2 2 1 SCOP 109993 VPS9 domain
2 1 1 0 SCOP 57924 Inhibitor of apoptosis (IAP) repeat
2 2 1 0 SCOP 101690 PAZ domain
2 2 1 1 SCOP 140984 PTPA-like
2 2 1 0 SCOP 88798 N-terminal, heterodimerisation domain of RBP7 (RpoE)
2 2 2 0 SCOP 103107 Hypothetical protein c14orf129, hspc210
2 2 1 1 SCOP 101233 PWI domain
2 2 2 0 SCOP 46585 HR1 repeat
2 2 2 0 SCOP 57552 Blood coagulation inhibitor (disintegrin)
2 2 2 0 SCOP 110942 HSP90 C-terminal domain
2 2 1 1 SCOP 54747 Ribosomal L11/L12e N-terminal domain
2 2 2 1 SCOP 117018 ATP-dependent DNA ligase DNA-binding domain
2 2 2 0 SCOP 140111 Endosomal sorting complex assembly domain
2 2 2 0 SCOP 143885 RGC domain-like
2 2 2 0 SCOP 75615 Siroheme synthase middle domains-like
2 2 1 0 SCOP 101489 Eukaryotic initiation factor 4f subunit eIF4g, eIF4e-binding domain
2 2 2 0 SCOP 50784 Transcription factor IIA (TFIIA), beta-barrel domain
2 1 1 0 SCOP 54416 Amine oxidase N-terminal region
2 2 2 0 SCOP 109715 DEK C-terminal domain
2 2 1 0 SCOP 81822 RuBisCo LSMT C-terminal, substrate-binding domain
2 2 2 0 SCOP 50916 Rap30/74 interaction domains
2 2 2 1 SCOP 47212 FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)
2 2 2 0 SCOP 110217 DNA-binding protein LAG-1 (CSL)
2 2 2 0 SCOP 89000 post-HMGL domain-like
2 2 2 0 SCOP 55277 GYF domain
2 2 2 0 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
2 2 2 0 SCOP 55711 Subdomain of clathrin and coatomer appendage domain
2 1 1 0 SCOP 82615 Polo-box domain
2 2 2 0 SCOP 140383 BSD domain-like
2 2 2 1 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
2 2 2 0 SCOP 47802 DNA polymerase beta, N-terminal domain-like
2 2 2 0 SCOP 158230 PRP4-like
1 1 1 1 SCOP 81338 Aquaporin-like
1 1 1 1 SCOP 53167 Purine and uridine phosphorylases
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 0 SCOP 46911 Ribosomal protein S18
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 1 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 0 SCOP 57840 Ribosomal protein L36
1 1 1 0 SCOP 64263 Prokaryotic ribosomal protein L17
1 1 1 0 SCOP 64182 DHH phosphoesterases
1 1 1 0 SCOP 143034 L35p-like
1 1 1 1 SCOP 55831 Thymidylate synthase/dCMP hydroxymethylase
1 1 1 0 SCOP 141091 L21p-like
1 1 1 0 SCOP 143800 L28p-like
1 1 1 1 SCOP 53748 Phosphoglycerate kinase
1 1 1 1 SCOP 75625 YebC-like
1 1 1 1 SCOP 82649 SufE/NifU
1 1 1 1 SCOP 75217 alpha/beta knot
1 1 1 1 SCOP 50324 Inorganic pyrophosphatase
1 1 1 1 SCOP 89623 Ribose/Galactose isomerase RpiB/AlsB
1 1 1 1 SCOP 52943 ATP synthase (F1-ATPase), gamma subunit
1 1 1 1 SCOP 55068 Peptide methionine sulfoxide reductase
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 0 SCOP 55194 Ribosome recycling factor, RRF
1 1 1 0 SCOP 54565 Ribosomal protein S16
1 1 1 1 SCOP 103263 Chorismate synthase, AroC
1 1 1 1 SCOP 56770 HydA/Nqo6-like
1 1 1 1 SCOP 56276 S-adenosylmethionine decarboxylase
1 1 1 1 SCOP 54285 MoaD/ThiS
1 1 1 1 SCOP 102705 NIF3 (NGG1p interacting factor 3)-like
1 1 1 0 SCOP 54060 His-Me finger endonucleases
1 1 1 1 SCOP 52121 Lumazine synthase
1 1 1 0 SCOP 55129 Ribosomal protein L30p/L7e
1 1 1 0 SCOP 54995 Ribosomal protein S6
1 1 1 0 SCOP 55387 Frataxin/Nqo15-like
1 1 1 0 SCOP 56988 Anthrax protective antigen
1 1 1 0 SCOP 89957 MTH1187/YkoF-like
1 1 1 0 SCOP 48140 Ribosomal protein L19 (L19e)
1 1 1 0 SCOP 144217 CSL zinc finger
1 1 1 0 SCOP 52042 Ribosomal protein L32e
1 1 1 1 SCOP 52949 Macro domain-like
1 1 1 1 SCOP 55469 FMN-dependent nitroreductase-like
1 1 1 0 SCOP 141678 MAL13P1.257-like
1 1 1 0 SCOP 54575 Ribosomal protein L31e
1 1 1 1 SCOP 69500 DTD-like
1 1 1 0 SCOP 47226 Histidine-containing phosphotransfer domain, HPT domain
1 1 1 1 SCOP 102886 Coproporphyrinogen III oxidase
1 1 1 0 SCOP 142897 TFB5-like
1 1 1 0 SCOP 103456 Preprotein translocase SecE subunit
1 1 1 0 SCOP 140718 Mediator hinge subcomplex-like
1 1 1 1 SCOP 53590 Nucleoside hydrolase
1 1 1 1 SCOP 54648 DLC
1 1 1 0 SCOP 81524 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
1 1 1 0 SCOP 81411 Mitochondrial cytochrome c oxidase subunit VIa
1 1 1 0 SCOP 81406 Mitochondrial cytochrome c oxidase subunit IV
1 1 1 0 SCOP 159468 AtpF-like
1 1 1 0 SCOP 63393 RNA polymerase subunits
1 1 1 0 SCOP 81514 Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
1 1 1 0 SCOP 55144 LigT-like
1 1 1 0 SCOP 55248 PCD-like
1 1 1 0 SCOP 54506 Diaminopimelate epimerase-like
1 1 1 0 SCOP 144210 Nop10-like SnoRNP
1 1 1 1 SCOP 53774 Glutaminase/Asparaginase
1 1 1 0 SCOP 69103 Arp2/3 complex 16 kDa subunit ARPC5
1 1 1 0 SCOP 51645 Malate synthase G
1 1 1 0 SCOP 81508 Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
1 1 1 0 SCOP 48662 Ribosomal protein L39e
1 1 1 0 SCOP 53639 AraD/HMP-PK domain-like
1 1 1 1 SCOP 140959 Indolic compounds 2,3-dioxygenase-like
1 1 1 1 SCOP 118203 Vacuolar ATP synthase subunit C
1 1 1 0 SCOP 161219 CHY zinc finger-like
1 1 1 0 SCOP 110849 ParB/Sulfiredoxin
1 1 1 0 SCOP 82282 Homocysteine S-methyltransferase
1 1 1 1 SCOP 69060 Arp2/3 complex 21 kDa subunit ARPC3
1 1 1 0 SCOP 81427 Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
1 1 1 0 SCOP 103486 V-type ATP synthase subunit C
1 1 1 0 SCOP 143870 PF0523-like
1 1 1 1 SCOP 64153 YjeF N-terminal domain-like
1 1 1 0 SCOP 103111 Activator of Hsp90 ATPase, Aha1
1 1 1 1 SCOP 55770 Profilin (actin-binding protein)
1 1 1 1 SCOP 46924 RNA polymerase subunit RPB10
1 1 1 0 SCOP 46988 Tubulin chaperone cofactor A
1 1 1 0 SCOP 69618 HemD-like
1 1 1 0 SCOP 143447 AMMECR1-like
1 1 1 0 SCOP 48690 Epsilon subunit of mitochondrial F1F0-ATP synthase
1 1 1 1 SCOP 55909 Pentein
1 1 1 1 SCOP 52788 Phosphotyrosine protein phosphatases I
1 1 1 1 SCOP 63562 RPB6/omega subunit-like
1 1 1 1 SCOP 53800 Chelatase
1 1 1 0 SCOP 141734 HisI-like
1 1 1 1 SCOP 46458 Globin-like
1 1 1 1 SCOP 101546 ASF1-like
1 1 1 0 SCOP 111038 YjbQ-like
1 1 1 0 SCOP 69118 AhpD-like
1 1 1 1 SCOP 102405 MCP/YpsA-like
1 1 1 1 SCOP 143243 Nqo5-like
1 1 1 1 SCOP 51717 Dihydropteroate synthetase-like
1 1 1 1 SCOP 55073 Nucleotide cyclase
1 1 1 1 SCOP 53795 PEP carboxykinase-like
1 1 1 1 SCOP 51998 PFL-like glycyl radical enzymes
1 1 1 0 SCOP 55718 SCP-like
1 1 1 0 SCOP 55724 Mog1p/PsbP-like
1 1 1 1 SCOP 52255 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
1 1 1 1 SCOP 56266 DmpA/ArgJ-like
1 1 1 0 SCOP 49482 Aromatic compound dioxygenase
1 1 1 0 SCOP 82771 GIY-YIG endonuclease
1 1 1 0 SCOP 82697 PurS-like
1 1 1 0 SCOP 55083 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
1 1 1 0 SCOP 46767 Methylated DNA-protein cysteine methyltransferase, C-terminal domain
1 1 1 0 SCOP 101744 Rof/RNase P subunit-like
1 1 1 0 SCOP 54447 ssDNA-binding transcriptional regulator domain
1 1 1 0 SCOP 89550 PHP domain-like
1 1 1 0 SCOP 55797 PR-1-like
1 1 1 0 SCOP 64167 SurE-like
1 1 1 0 SCOP 158682 TerB-like
1 1 1 0 SCOP 110857 Gamma-glutamyl cyclotransferase-like
1 1 1 0 SCOP 55154 CYTH-like phosphatases
1 1 1 0 SCOP 54913 GlnB-like
1 1 1 1 SCOP 56762 HydB/Nqo4-like
1 1 1 0 SCOP 53218 Molybdenum cofactor biosynthesis proteins
1 1 1 0 SCOP 53955 Lysozyme-like
1 1 1 1 SCOP 54111 Urease, gamma-subunit
1 1 1 1 SCOP 51278 Urease, beta-subunit
1 1 1 0 SCOP 55200 Translation initiation factor IF3, C-terminal domain
1 1 1 0 SCOP 159245 AttH-like
1 1 1 0 SCOP 54975 Acylphosphatase/BLUF domain-like
1 1 1 0 SCOP 158997 Trm112p-like
1 1 1 1 SCOP 53213 LigB-like
1 1 1 1 SCOP 51391 Thiamin phosphate synthase
1 1 1 0 SCOP 51004 C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
1 1 1 1 SCOP 48600 Chorismate mutase II
1 1 1 0 SCOP 109910 YgfY-like
1 1 1 0 SCOP 49472 Transthyretin (synonym: prealbumin)
1 1 1 0 SCOP 158694 UraD-Like
1 1 1 0 SCOP 55826 YbaK/ProRS associated domain
1 1 1 0 SCOP 102588 LmbE-like
1 1 1 1 SCOP 89796 CoA-transferase family III (CaiB/BaiF)
1 1 1 1 SCOP 160909 ATP12-like
1 1 1 0 SCOP 101386 all-alpha NTP pyrophosphatases
1 1 1 0 SCOP 56747 Prim-pol domain
1 1 1 1 SCOP 110581 Indigoidine synthase A-like
1 1 1 1 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
1 1 1 0 SCOP 57802 Rubredoxin-like
1 1 1 0 SCOP 142338 CofD-like
1 1 1 0 SCOP 50486 FMT C-terminal domain-like
1 1 1 0 SCOP 103196 Roadblock/LC7 domain
1 1 1 0 SCOP 64076 MTH938-like
1 1 1 0 SCOP 117070 LEA14-like
1 1 1 0 SCOP 50939 Sialidases
1 1 1 1 SCOP 75005 Arabinanase/levansucrase/invertase
1 1 1 0 SCOP 54626 Chalcone isomerase
1 1 1 0 SCOP 56726 DNA topoisomerase IV, alpha subunit
1 1 1 0 SCOP 102198 Putative cyclase
1 1 1 0 SCOP 160631 SMI1/KNR4-like
1 1 1 1 SCOP 160920 PSTPO5379-like
1 1 1 0 SCOP 46950 Double-stranded DNA-binding domain
1 1 1 0 SCOP 160350 Rnp2-like
1 1 1 1 SCOP 54984 eEF-1beta-like
1 1 1 1 SCOP 55287 RPB5-like RNA polymerase subunit
1 1 1 0 SCOP 143437 THUMP domain-like
1 1 1 0 SCOP 116820 Rps17e-like
1 1 1 0 SCOP 160374 RplX-like
1 1 1 0 SCOP 69695 SRP19
1 1 1 0 SCOP 55895 Ribonuclease Rh-like
1 1 1 1 SCOP 69864 Argininosuccinate synthetase, C-terminal domain
1 1 1 0 SCOP 158832 Tex N-terminal region-like
1 1 1 1 SCOP 69336 Alpha subunit of glutamate synthase, C-terminal domain
1 1 1 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
1 1 1 0 SCOP 53706 Formate dehydrogenase/DMSO reductase, domains 1-3
1 1 1 0 SCOP 101898 NHL repeat
1 1 1 0 SCOP 81923 Double Clp-N motif
1 1 1 1 SCOP 82114 Riboflavin kinase-like
1 1 1 0 SCOP 160991 CV3147-like
1 1 1 0 SCOP 50405 Actin-crosslinking proteins
1 1 1 1 SCOP 102645 CoaB-like
1 1 1 0 SCOP 49344 CBD9-like
1 1 1 0 SCOP 48537 Phospholipase C/P1 nuclease
1 1 1 0 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 1 SCOP 56719 Type II DNA topoisomerase
1 1 1 0 SCOP 55234 Cyanase C-terminal domain
1 1 1 0 SCOP 51344 Epsilon subunit of F1F0-ATP synthase N-terminal domain
1 1 1 0 SCOP 144206 NOB1 zinc finger-like
1 1 1 0 SCOP 49265 Fibronectin type III
1 1 1 1 SCOP 68923 PEP carboxykinase N-terminal domain
1 1 1 0 SCOP 56436 C-type lectin-like
1 1 1 0 SCOP 88633 Positive stranded ssRNA viruses
1 1 1 1 SCOP 52418 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
1 1 1 0 SCOP 75704 Mitotic arrest deficient-like 1, Mad1
1 1 1 0 SCOP 58014 Coiled-coil domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 63999 Thiamin pyrophosphokinase, catalytic domain
1 1 1 0 SCOP 142984 Nqo1 middle domain-like
1 1 1 1 SCOP 50621 Alanine racemase C-terminal domain-like
1 1 1 0 SCOP 51294 Hedgehog/intein (Hint) domain
1 1 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
1 1 1 1 SCOP 110111 Ctag/Cox11
1 1 1 0 SCOP 46966 Spectrin repeat
1 1 1 0 SCOP 143968 UbiD C-terminal domain-like
1 1 1 1 SCOP 110019 ERO1-like
1 1 1 0 SCOP 81891 Poly A polymerase C-terminal region-like
1 1 1 1 SCOP 53920 Fe-only hydrogenase
1 1 1 1 SCOP 54810 GMP synthetase C-terminal dimerisation domain
1 1 1 0 SCOP 46977 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
1 1 1 0 SCOP 48300 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
1 1 1 0 SCOP 90209 Ran binding protein zinc finger-like
1 1 1 0 SCOP 49354 PapD-like
1 1 1 0 SCOP 47144 HSC20 (HSCB), C-terminal oligomerisation domain
1 1 1 0 SCOP 110836 Hypothetical protein SAV1430
1 1 1 0 SCOP 110921 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
1 1 1 0 SCOP 101278 N-terminal domain of adenylylcyclase associated protein, CAP
1 1 1 0 SCOP 52413 UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
1 1 1 0 SCOP 47933 ERP29 C domain-like
1 1 1 0 SCOP 55550 SH2 domain
1 1 1 0 SCOP 54782 Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
1 1 1 0 SCOP 140490 Nqo1C-terminal domain-like
1 1 1 1 SCOP 81837 BEACH domain
1 1 1 0 SCOP 47446 Signal peptide-binding domain
1 1 1 1 SCOP 56542 Substrate-binding domain of HMG-CoA reductase
1 1 1 0 SCOP 54991 Anticodon-binding domain of PheRS
1 1 1 0 SCOP 116742 eIF2alpha middle domain-like
1 1 1 0 SCOP 47928 N-terminal domain of the delta subunit of the F1F0-ATP synthase
1 1 1 0 SCOP 160696 BTG domain-like
1 1 1 1 SCOP 89817 Mago nashi protein
1 1 1 0 SCOP 48670 Transducin (heterotrimeric G protein), gamma chain
1 1 1 1 SCOP 48445 14-3-3 protein
1 1 1 0 SCOP 47396 Transcription factor IIA (TFIIA), alpha-helical domain
1 1 1 1 SCOP 47874 Annexin
1 1 1 0 SCOP 118359 Expressed protein At2g23090/F21P24.15
1 1 1 0 SCOP 111347 Rap/Ran-GAP
1 1 1 0 SCOP 47676 Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
1 1 1 0 SCOP 63570 PABC (PABP) domain
1 1 1 1 SCOP 101447 Formin homology 2 domain (FH2 domain)
1 1 1 1 SCOP 47938 Functional domain of the splicing factor Prp18
1 1 1 1 SCOP 110004 Glycolipid transfer protein, GLTP
1 1 1 0 SCOP 82051 Obg GTP-binding protein N-terminal domain
1 1 1 1 SCOP 55481 N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
1 1 1 0 SCOP 161065 ATP synthase D chain-like
1 1 1 0 SCOP 140102 ISY1 domain-like
1 1 1 0 SCOP 47672 Transferrin receptor-like dimerisation domain
1 1 1 0 SCOP 81531 Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
1 1 1 0 SCOP 116907 Hook domain
1 1 1 0 SCOP 88688 Families 57/38 glycoside transferase middle domain
1 1 1 1 SCOP 48479 Cytochrome c oxidase subunit E
1 1 1 1 SCOP 142019 Nqo1 FMN-binding domain-like
1 1 1 0 SCOP 54368 Glutamine synthetase, N-terminal domain
1 1 1 1 SCOP 109885 I/LWEQ domain
1 1 1 0 SCOP 143791 DUSP-like
1 1 1 0 SCOP 109925 Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
1 1 1 0 SCOP 54529 Mitochondrial glycoprotein MAM33-like
1 1 1 0 SCOP 54713 Elongation factor Ts (EF-Ts), dimerisation domain
1 1 1 1 SCOP 64158 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
1 1 1 1 SCOP 46609 Fe,Mn superoxide dismutase (SOD), N-terminal domain
1 1 1 0 SCOP 161060 ATP synthase B chain-like
1 1 1 1 SCOP 110993 eIF-2-alpha, C-terminal domain
1 1 1 1 SCOP 89942 eEF1-gamma domain
1 1 1 0 SCOP 102848 NSFL1 (p97 ATPase) cofactor p47, SEP domain
1 1 1 0 SCOP 48168 R1 subunit of ribonucleotide reductase, N-terminal domain
1 1 1 0 SCOP 160527 V-type ATPase subunit E-like
1 1 1 1 SCOP 82215 C-terminal autoproteolytic domain of nucleoporin nup98
1 1 1 0 SCOP 53036 Eukaryotic RPB5 N-terminal domain
1 1 1 0 SCOP 47157 Mitochondrial import receptor subunit Tom20
1 1 1 1 SCOP 50989 Clathrin heavy-chain terminal domain
1 1 1 0 SCOP 54556 Chitinase insertion domain
1 1 1 0 SCOP 101391 Hsp90 co-chaperone CDC37
1 1 1 1 SCOP 81382 Skp1 dimerisation domain-like
1 1 1 0 SCOP 57424 LDL receptor-like module
1 1 1 0 SCOP 46942 Elongation factor TFIIS domain 2
1 1 1 0 SCOP 140427 VPS28 C-terminal domain-like
1 1 1 0 SCOP 81872 BRCA2 helical domain
1 1 1 0 SCOP 159065 Dom34/Pelota N-terminal domain-like
1 1 1 0 SCOP 143503 PUG domain-like
1 1 1 0 SCOP 101931 Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain
1 1 1 1 SCOP 69340 C-terminal domain of adenylylcyclase associated protein
1 1 1 0 SCOP 143575 GAS2 domain-like
1 1 1 0 SCOP 159042 Plus3-like
1 1 1 1 SCOP 88802 Pre-PUA domain
1 1 1 1 SCOP 56741 Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
1 1 1 0 SCOP 69848 LCCL domain
1 1 1 0 SCOP 63862 Thiamin pyrophosphokinase, substrate-binding domain
1 1 1 0 SCOP 55003 PAP/Archaeal CCA-adding enzyme, C-terminal domain
1 1 1 0 SCOP 140612 EB1 dimerisation domain-like
1 1 1 0 SCOP 102860 mRNA decapping enzyme DcpS N-terminal domain
1 1 1 1 SCOP 63887 P-domain of calnexin/calreticulin
1 1 1 0 SCOP 101420 C-terminal domain of Ku80
1 1 1 0 SCOP 160897 Taf5 N-terminal domain-like
1 1 1 0 SCOP 116878 TrmE connector domain
1 1 1 0 SCOP 64586 C-terminal domain of ProRS
1 1 1 0 SCOP 51064 Head domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 160219 AMPKBI-like
1 1 1 0 SCOP 140586 Dcp2 domain-like
1 1 1 1 SCOP 55035 NAD-binding domain of HMG-CoA reductase
1 1 1 0 SCOP 75445 D-ribose-5-phosphate isomerase (RpiA), lid domain
1 1 1 0 SCOP 101790 Aminomethyltransferase beta-barrel domain
1 1 1 1 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 0 SCOP 81496 Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
1 1 1 0 SCOP 81502 ISP transmembrane anchor
1 1 1 0 SCOP 101821 Aminopeptidase/glucanase lid domain
1 1 1 1 SCOP 101224 HAND domain of the nucleosome remodeling ATPase ISWI
1 1 1 0 SCOP 57879 Zinc domain conserved in yeast copper-regulated transcription factors
1 1 1 0 SCOP 109728 Hypothetical protein AF0491, middle domain
1 1 1 0 SCOP 109736 FGAM synthase PurL, linker domain
1 1 1 0 SCOP 101238 XPC-binding domain
1 1 1 0 SCOP 57770 Methionyl-tRNA synthetase (MetRS), Zn-domain
1 1 1 0 SCOP 140125 Rabenosyn-5 Rab-binding domain-like
1 1 1 0 SCOP 143026 Kinetochore globular domain

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The following superfamilies have one or more weak hits:

SCOP superfamily Hypothetical protein VC0424
SCOP superfamily Baseplate structural protein gp8
SCOP superfamily Sigma2 domain of RNA polymerase sigma factors
SCOP superfamily Receptor-binding domain of short tail fibre protein gp12
SCOP superfamily N-utilization substance G protein NusG, N-terminal domain
SCOP superfamily X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal domain
SCOP superfamily F1F0 ATP synthase subunit B, membrane domain
SCOP superfamily Photosystem I subunits PsaA/PsaB
SCOP superfamily Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
SCOP superfamily Cytochrome c oxidase subunit II-like, transmembrane region
SCOP superfamily Cytochrome c oxidase subunit III-like
SCOP superfamily Rad50 coiled-coil Zn hook
SCOP superfamily YhbC-like, N-terminal domain
SCOP superfamily VSV matrix protein
SCOP superfamily Ribosomal protein L20
SCOP superfamily Colicin E3 receptor domain
SCOP superfamily Membrane penetration protein mu1
SCOP superfamily Integrin beta tail domain
SCOP superfamily gp5 N-terminal domain-like
SCOP superfamily Nucleoplasmin-like core domain
SCOP superfamily Hypothetical protein YjbJ
SCOP superfamily Rho N-terminal domain-like
SCOP superfamily F1 ATPase inhibitor, IF1, C-terminal domain
SCOP superfamily Phase 1 flagellin
SCOP superfamily Outer capsid protein sigma 3
SCOP superfamily YopH tyrosine phosphatase N-terminal domain
SCOP superfamily Apolipoprotein A-I
SCOP superfamily Bacterial hemolysins
SCOP superfamily Colicin Ia, N-terminal domain
SCOP superfamily Variant surface glycoprotein (N-terminal domain)
SCOP superfamily Influenza hemagglutinin (stalk)
SCOP superfamily Outer membrane lipoprotein
SCOP superfamily Multimerization domain of the phosphoprotein from sendai virus
SCOP superfamily Fibrinogen coiled-coil and central regions
SCOP superfamily Serine protease inhibitors
SCOP superfamily Cystine-knot cytokines
SCOP superfamily EGF/Laminin
SCOP superfamily Plant lectins/antimicrobial peptides
SCOP superfamily Outer membrane efflux proteins (OEP)
SCOP superfamily Porins
SCOP superfamily Bcl-2 inhibitors of programmed cell death
SCOP superfamily Replication terminator protein (Tus)
SCOP superfamily Major capsid protein gp5
SCOP superfamily Bactericidal permeability-increasing protein, BPI
SCOP superfamily Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
SCOP superfamily Probable ACP-binding domain of malonyl-CoA ACP transacylase
SCOP superfamily ClpS-like
SCOP superfamily Pili subunits
SCOP superfamily Aspartate/glutamate racemase
SCOP superfamily Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
SCOP superfamily Resolvase-like
SCOP superfamily RuBisCo, C-terminal domain
SCOP superfamily Vitelline membrane outer protein-I (VMO-I)
SCOP superfamily Carbohydrate binding domain
SCOP superfamily Nitrous oxide reductase, N-terminal domain
SCOP superfamily STI-like
SCOP superfamily Electron transport accessory proteins
SCOP superfamily Myosin S1 fragment, N-terminal domain
SCOP superfamily Cna protein B-type domain
SCOP superfamily Cytochrome f, large domain
SCOP superfamily Purple acid phosphatase, N-terminal domain
SCOP superfamily Tetraspanin
SCOP superfamily Phospholipase A2, PLA2
SCOP superfamily Peridinin-chlorophyll protein
SCOP superfamily Tetracyclin repressor-like, C-terminal domain
SCOP superfamily Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
SCOP superfamily TrpR-like
SCOP superfamily Influenza virus matrix protein M1
SCOP superfamily FliG
SCOP superfamily GntR ligand-binding domain-like
SCOP superfamily Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
SCOP superfamily Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
SCOP superfamily N-terminal domain of cbl (N-cbl)
SCOP superfamily Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
SCOP superfamily Cloroperoxidase
SCOP superfamily Insect pheromone/odorant-binding proteins
SCOP superfamily Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit
SCOP superfamily alpha-catenin/vinculin-like
SCOP superfamily Apolipoprotein
SCOP superfamily PGBD-like
SCOP superfamily Smac/diablo
SCOP superfamily PspA lactotransferrin-binding region
SCOP superfamily RILP dimerisation region
SCOP superfamily Zinc hairpin stack
SCOP superfamily Photosystem II antenna protein-like
SCOP superfamily PsbZ-like
SCOP superfamily PH0156-like
SCOP superfamily Api92-like
SCOP superfamily BLRF2-like
SCOP superfamily FlaG-like
SCOP superfamily Acetoacetate decarboxylase-like
SCOP superfamily NRDP1 C-terminal domain-like
SCOP superfamily TBP-interacting protein-like
SCOP superfamily XCC0632-like
SCOP superfamily EreA/ChaN-like
SCOP superfamily SO1590-like
SCOP superfamily Sama2622-like
SCOP superfamily RbcX-like
SCOP superfamily YqcC-like
SCOP superfamily MPN010-like
SCOP superfamily Vanabin-like
SCOP superfamily Agglutinin HPA-like
SCOP superfamily PriB N-terminal domain-like
SCOP superfamily Rhabdovirus nucleoprotein-like
SCOP superfamily TTHA0068-like
SCOP superfamily HIV integrase-binding domain
SCOP superfamily MW0975(SA0943)-like
SCOP superfamily Connexin43
SCOP superfamily WWE domain
SCOP superfamily Accessory protein X4 (ORF8, ORF7a)
SCOP superfamily Hypothetical protein YqbG
SCOP superfamily DNA-binding domain of EIN3-like
SCOP superfamily YAP1 redox domain
SCOP superfamily Hormone receptor domain
SCOP superfamily OmpH-like
SCOP superfamily Recombination protein RecR
SCOP superfamily DinB/YfiT-like putative metalloenzymes
SCOP superfamily CAPPD, an extracellular domain of amyloid beta A4 protein
SCOP superfamily PhoU-like
SCOP superfamily CCHHC domain
SCOP superfamily Respiratory nitrate reductase 1 gamma chain
SCOP superfamily Adhesin YadA, collagen-binding domain
SCOP superfamily NAC domain
SCOP superfamily Sema domain
SCOP superfamily Stathmin
SCOP superfamily ADP-ribosylglycohydrolase
SCOP superfamily P40 nucleoprotein
SCOP superfamily GRIP domain
SCOP superfamily Methenyltetrahydrofolate cyclohydrolase-like
SCOP superfamily Staphylocoagulase
SCOP superfamily Chemosensory protein Csp2

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.