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  Home > Genomes > Superfamily assignments for Caldisphaera lagunensis DSM 15908


Caldisphaera lagunensis DSM 15908 superfamily assignments

Taxonomy
Taxonomy browser entry

Archaea; TACK group; Crenarchaeota; Thermoprotei; Acidilobales; Caldisphaeraceae; Caldisphaera; Caldisphaera lagunensis; Caldisphaera lagunensis DSM 15908

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Fasta format sequences
Domain assignments

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Assignment statistics

Sequences: 1478 total
1064 (72 %) with assignment
299 average length
68 % amino acid coverage
Domains: 1422 total
453 unique superfamilies
245 unique families
284 average length
3.1 average superfamily size
68 % formed by duplication
Domain combinations: 204 domain pairs
553 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies
98 91 28 7 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
43 43 16 6 SCOP 51735 NAD(P)-binding Rossmann-fold domains
40 40 11 1 SCOP 46785 "Winged helix" DNA-binding domain
31 31 2 0 SCOP 103473 MFS general substrate transporter
24 24 11 3 SCOP 50249 Nucleic acid-binding proteins
22 22 5 0 SCOP 53448 Nucleotide-diphospho-sugar transferases
22 22 3 7 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
20 18 7 1 SCOP 51905 FAD/NAD(P)-binding domain
20 15 8 4 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
18 18 4 0 SCOP 102114 Radical SAM enzymes
17 17 7 1 SCOP 53850 Periplasmic binding protein-like II
16 16 2 4 SCOP 53383 PLP-dependent transferases
15 10 5 0 SCOP 54631 CBS-domain pair
14 14 4 3 SCOP 56281 Metallo-hydrolase/oxidoreductase
14 14 2 1 SCOP 56801 Acetyl-CoA synthetase-like
13 13 10 3 SCOP 52374 Nucleotidylyl transferase
13 13 8 4 SCOP 54211 Ribosomal protein S5 domain 2-like
13 7 2 1 SCOP 53901 Thiolase-like
12 12 4 1 SCOP 52402 Adenine nucleotide alpha hydrolases-like
12 12 5 0 SCOP 54862 4Fe-4S ferredoxins
12 12 9 2 SCOP 55681 Class II aaRS and biotin synthetases
12 9 2 1 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
11 11 4 1 SCOP 51556 Metallo-dependent hydrolases
11 9 4 1 SCOP 161098 MetI-like
11 10 5 1 SCOP 52833 Thioredoxin-like
11 11 1 0 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
9 9 8 2 SCOP 50447 Translation proteins
8 8 3 0 SCOP 56300 Metallo-dependent phosphatases
8 7 5 3 SCOP 100950 NagB/RpiA/CoA transferase-like
8 8 3 0 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
7 7 3 0 SCOP 56784 HAD-like
7 7 2 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
7 7 3 1 SCOP 52096 ClpP/crotonase
7 7 3 3 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
7 7 4 3 SCOP 52467 DHS-like NAD/FAD-binding domain
7 7 4 0 SCOP 51338 Composite domain of metallo-dependent hydrolases
7 7 2 1 SCOP 56645 Acyl-CoA dehydrogenase NM domain-like
7 7 2 1 SCOP 47203 Acyl-CoA dehydrogenase C-terminal domain-like
7 6 6 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
7 7 5 0 SCOP 52922 TK C-terminal domain-like
6 6 2 3 SCOP 51569 Aldolase
6 6 4 1 SCOP 53271 PRTase-like
6 6 1 0 SCOP 57829 Zn-binding ribosomal proteins
6 6 3 0 SCOP 56112 Protein kinase-like (PK-like)
6 6 4 2 SCOP 50104 Translation proteins SH3-like domain
6 6 3 0 SCOP 54285 MoaD/ThiS
6 6 4 0 SCOP 52954 Class II aaRS ABD-related
6 5 5 0 SCOP 57783 Zinc beta-ribbon
6 3 1 0 SCOP 55979 DNA clamp
6 6 2 2 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
6 6 1 0 SCOP 49299 PKD domain
6 2 1 0 SCOP 53738 Phosphoglucomutase, first 3 domains
5 4 4 1 SCOP 56059 Glutathione synthetase ATP-binding domain-like
5 5 3 2 SCOP 53613 Ribokinase-like
5 5 1 2 SCOP 51366 Ribulose-phoshate binding barrel
5 4 2 0 SCOP 54197 HIT-like
5 5 3 0 SCOP 89447 AbrB/MazE/MraZ-like
5 5 3 1 SCOP 47240 Ferritin-like
5 5 1 1 SCOP 51430 NAD(P)-linked oxidoreductase
5 5 1 1 SCOP 52283 Formate/glycerate dehydrogenase catalytic domain-like
5 5 3 0 SCOP 47598 Ribbon-helix-helix
5 5 4 0 SCOP 81301 Nucleotidyltransferase
5 3 3 0 SCOP 103481 Multidrug resistance efflux transporter EmrE
5 5 5 0 SCOP 46548 alpha-helical ferredoxin
5 5 2 0 SCOP 55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
4 4 2 1 SCOP 53474 alpha/beta-Hydrolases
4 4 4 1 SCOP 52317 Class I glutamine amidotransferase-like
4 4 2 1 SCOP 53167 Purine and uridine phosphorylases
4 4 3 1 SCOP 53137 Translational machinery components
4 4 1 0 SCOP 64182 DHH phosphoesterases
4 4 1 0 SCOP 53067 Actin-like ATPase domain
4 4 2 2 SCOP 75217 alpha/beta knot
4 4 2 2 SCOP 53633 Carbamate kinase-like
4 4 3 1 SCOP 48150 DNA-glycosylase
4 4 4 0 SCOP 54292 2Fe-2S ferredoxin-like
4 4 3 3 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
4 4 1 0 SCOP 64307 SirA-like
4 4 1 0 SCOP 75169 DsrEFH-like
4 4 1 2 SCOP 56796 Dehydroquinate synthase-like
4 4 2 0 SCOP 53187 Zn-dependent exopeptidases
4 4 2 0 SCOP 50182 Sm-like ribonucleoproteins
4 4 3 1 SCOP 50475 FMN-binding split barrel
4 4 3 1 SCOP 55315 L30e-like
4 4 3 1 SCOP 88723 PIN domain-like
4 4 2 2 SCOP 51182 RmlC-like cupins
4 4 3 1 SCOP 88713 Glycoside hydrolase/deacetylase
4 4 4 0 SCOP 53218 Molybdenum cofactor biosynthesis proteins
4 4 3 0 SCOP 88697 PUA domain-like
4 4 2 0 SCOP 53323 Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
4 4 1 2 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
4 3 3 1 SCOP 52210 Succinyl-CoA synthetase domains
4 4 1 1 SCOP 55060 GHMP Kinase, C-terminal domain
4 4 2 0 SCOP 56042 PurM C-terminal domain-like
4 4 1 1 SCOP 48310 Aldehyde ferredoxin oxidoreductase, C-terminal domains
4 4 1 1 SCOP 56228 Aldehyde ferredoxin oxidoreductase, N-terminal domain
3 3 2 2 SCOP 53697 SIS domain
3 3 2 1 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
3 3 1 2 SCOP 55282 RL5-like
3 3 2 1 SCOP 55920 Creatinase/aminopeptidase
3 3 2 2 SCOP 53098 Ribonuclease H-like
3 3 2 1 SCOP 52980 Restriction endonuclease-like
3 3 2 1 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
3 3 1 0 SCOP 50129 GroES-like
3 3 1 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
3 3 1 0 SCOP 51161 Trimeric LpxA-like enzymes
3 3 1 1 SCOP 53720 ALDH-like
3 3 1 1 SCOP 55811 Nudix
3 2 2 0 SCOP 54637 Thioesterase/thiol ester dehydrase-isomerase
3 3 1 1 SCOP 51395 FMN-linked oxidoreductases
3 3 2 1 SCOP 56672 DNA/RNA polymerases
3 3 1 0 SCOP 53649 Alkaline phosphatase-like
3 3 3 0 SCOP 74650 Galactose mutarotase-like
3 3 2 0 SCOP 56317 Carbon-nitrogen hydrolase
3 3 2 0 SCOP 48208 Six-hairpin glycosidases
3 3 3 2 SCOP 55931 Glutamine synthetase/guanido kinase
3 3 2 0 SCOP 54909 Dimeric alpha+beta barrel
3 3 3 1 SCOP 52016 LeuD/IlvD-like
3 3 3 0 SCOP 47413 lambda repressor-like DNA-binding domains
3 3 2 0 SCOP 53807 "Helical backbone" metal receptor
3 3 2 0 SCOP 50692 ADC-like
3 3 2 0 SCOP 53300 vWA-like
3 2 2 0 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
3 3 3 0 SCOP 55021 ACT-like
3 3 2 0 SCOP 53146 Nitrogenase accessory factor-like
3 3 1 0 SCOP 82704 AlbA-like
3 2 2 0 SCOP 54980 EF-G C-terminal domain-like
3 2 2 0 SCOP 116726 TrkA C-terminal domain-like
3 3 1 1 SCOP 56425 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
3 3 1 1 SCOP 46977 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
3 3 1 0 SCOP 55326 PurM N-terminal domain-like
3 2 2 0 SCOP 47954 Cyclin-like
3 3 3 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
3 3 1 0 SCOP 55031 Bacterial exopeptidase dimerisation domain
2 2 1 1 SCOP 53790 Tetrapyrrole methylase
2 2 1 1 SCOP 52141 Uracil-DNA glycosylase-like
2 2 1 1 SCOP 75304 Amidase signature (AS) enzymes
2 2 2 0 SCOP 111331 NAD kinase/diacylglycerol kinase-like
2 2 1 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
2 2 1 0 SCOP 52080 Ribosomal proteins L15p and L18e
2 2 2 0 SCOP 46946 S13-like H2TH domain
2 2 2 0 SCOP 55174 Alpha-L RNA-binding motif
2 2 1 0 SCOP 47060 S15/NS1 RNA-binding domain
2 2 1 2 SCOP 48557 L-aspartase-like
2 1 1 1 SCOP 52821 Rhodanese/Cell cycle control phosphatase
2 2 1 2 SCOP 55821 YrdC/RibB
2 2 1 0 SCOP 111283 Putative modulator of DNA gyrase, PmbA/TldD
2 2 1 0 SCOP 51283 dUTPase-like
2 2 1 0 SCOP 48452 TPR-like
2 2 1 0 SCOP 56276 S-adenosylmethionine decarboxylase
2 2 1 0 SCOP 52121 Lumazine synthase
2 2 1 1 SCOP 48576 Terpenoid synthases
2 2 1 0 SCOP 49764 HSP20-like chaperones
2 1 1 0 SCOP 143744 GlcG-like
2 2 2 0 SCOP 109604 HD-domain/PDEase-like
2 2 2 0 SCOP 48613 Heme oxygenase-like
2 2 1 1 SCOP 51726 UROD/MetE-like
2 2 1 0 SCOP 46579 Prefoldin
2 2 1 0 SCOP 52499 Isochorismatase-like hydrolases
2 2 1 0 SCOP 63393 RNA polymerase subunits
2 2 2 1 SCOP 53639 AraD/HMP-PK domain-like
2 2 1 0 SCOP 81343 Fumarate reductase respiratory complex transmembrane subunits
2 2 2 0 SCOP 53032 tRNA-intron endonuclease catalytic domain-like
2 2 2 0 SCOP 55257 RBP11-like subunits of RNA polymerase
2 2 1 1 SCOP 52768 Arginase/deacetylase
2 2 1 1 SCOP 55909 Pentein
2 2 1 0 SCOP 101960 Stabilizer of iron transporter SufD
2 2 2 0 SCOP 51998 PFL-like glycyl radical enzymes
2 2 1 0 SCOP 55718 SCP-like
2 1 1 0 SCOP 46955 Putative DNA-binding domain
2 2 2 0 SCOP 75712 Rad50 coiled-coil Zn hook
2 2 1 1 SCOP 51230 Single hybrid motif
2 2 2 0 SCOP 50022 ISP domain
2 2 1 0 SCOP 89550 PHP domain-like
2 2 2 0 SCOP 52507 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
2 2 1 0 SCOP 102215 Creatininase
2 2 1 0 SCOP 53822 Periplasmic binding protein-like I
2 1 1 0 SCOP 51004 C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
2 2 1 1 SCOP 89796 CoA-transferase family III (CaiB/BaiF)
2 2 2 1 SCOP 52242 Cobalamin (vitamin B12)-binding domain
2 2 1 0 SCOP 159659 Cgl1923-like
2 2 1 2 SCOP 51604 Enolase C-terminal domain-like
2 2 1 0 SCOP 82171 DPP6 N-terminal domain-like
2 1 1 0 SCOP 160975 AF1531-like
2 2 2 0 SCOP 55186 ThrRS/AlaRS common domain
2 2 2 0 SCOP 63867 MoeA C-terminal domain-like
2 2 1 0 SCOP 53092 Creatinase/prolidase N-terminal domain
2 2 1 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
2 1 1 0 SCOP 82866 Multidrug efflux transporter AcrB transmembrane domain
2 2 1 1 SCOP 48592 GroEL equatorial domain-like
2 2 2 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
2 2 2 1 SCOP 53706 Formate dehydrogenase/DMSO reductase, domains 1-3
2 2 1 0 SCOP 51971 Nucleotide-binding domain
2 2 2 0 SCOP 81665 Calcium ATPase, transmembrane domain M
2 1 1 1 SCOP 52440 PreATP-grasp domain
2 2 1 1 SCOP 53671 Aspartate/ornithine carbamoyltransferase
2 2 1 0 SCOP 142984 Nqo1 middle domain-like
2 2 2 1 SCOP 143968 UbiD C-terminal domain-like
2 2 2 1 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
2 2 1 1 SCOP 54826 Enolase N-terminal domain-like
2 2 1 1 SCOP 52029 GroEL apical domain-like
2 2 2 1 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
2 2 2 0 SCOP 141322 NfeD domain-like
2 2 2 1 SCOP 63882 MoeA N-terminal region -like
2 1 1 1 SCOP 55945 TATA-box binding protein-like
2 1 1 0 SCOP 56053 Ribosomal protein L6
2 2 1 0 SCOP 55957 Phosphoglucomutase, C-terminal domain
2 2 1 0 SCOP 140490 Nqo1C-terminal domain-like
2 2 2 0 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 1 0 SCOP 81271 TGS-like
2 2 1 1 SCOP 142019 Nqo1 FMN-binding domain-like
2 2 2 0 SCOP 81653 Calcium ATPase, transduction domain A
2 2 1 1 SCOP 55666 Ribonuclease PH domain 2-like
2 2 2 0 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 1 0 SCOP 54849 GroEL-intermediate domain like
2 2 1 0 SCOP 88802 Pre-PUA domain
2 2 1 0 SCOP 54585 Cdc48 domain 2-like
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 0 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54570 Ribosomal protein S19
1 1 1 0 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 1 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 1 SCOP 53597 Dihydrofolate reductase-like
1 1 1 1 SCOP 52218 Flavoproteins
1 1 1 0 SCOP 110324 Ribosomal L27 protein-like
1 1 1 1 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
1 1 1 1 SCOP 53748 Phosphoglycerate kinase
1 1 1 0 SCOP 82649 SufE/NifU
1 1 1 1 SCOP 50324 Inorganic pyrophosphatase
1 1 1 0 SCOP 160369 Ribosomal protein L10-like
1 1 1 0 SCOP 81333 F1F0 ATP synthase subunit C
1 1 1 0 SCOP 109755 PhoU-like
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 0 SCOP 82784 OsmC-like
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 0 SCOP 51730 FAD-linked oxidoreductase
1 1 1 1 SCOP 103263 Chorismate synthase, AroC
1 1 1 1 SCOP 51713 tRNA-guanine transglycosylase
1 1 1 0 SCOP 50715 Ribosomal protein L25-like
1 1 1 1 SCOP 56770 HydA/Nqo6-like
1 1 1 1 SCOP 51412 Inosine monophosphate dehydrogenase (IMPDH)
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 1 SCOP 64005 Undecaprenyl diphosphate synthase
1 1 1 0 SCOP 56655 Carbohydrate phosphatase
1 1 1 1 SCOP 53254 Phosphoglycerate mutase-like
1 1 1 1 SCOP 55205 EPT/RTPC-like
1 1 1 1 SCOP 81345 ABC transporter involved in vitamin B12 uptake, BtuC
1 1 1 1 SCOP 55298 YjgF-like
1 1 1 0 SCOP 55129 Ribosomal protein L30p/L7e
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 0 SCOP 51419 PLP-binding barrel
1 1 1 1 SCOP 48140 Ribosomal protein L19 (L19e)
1 1 1 0 SCOP 52042 Ribosomal protein L32e
1 1 1 0 SCOP 52949 Macro domain-like
1 1 1 1 SCOP 55469 FMN-dependent nitroreductase-like
1 1 1 1 SCOP 48256 Citrate synthase
1 1 1 0 SCOP 54575 Ribosomal protein L31e
1 1 1 0 SCOP 52799 (Phosphotyrosine protein) phosphatases II
1 1 1 0 SCOP 103456 Preprotein translocase SecE subunit
1 1 1 0 SCOP 48317 Acid phosphatase/Vanadium-dependent haloperoxidase
1 1 1 0 SCOP 54534 FKBP-like
1 1 1 0 SCOP 54427 NTF2-like
1 1 1 1 SCOP 56322 ADC synthase
1 1 1 1 SCOP 111278 SSo0622-like
1 1 1 0 SCOP 159468 AtpF-like
1 1 1 0 SCOP 55144 LigT-like
1 1 1 1 SCOP 51445 (Trans)glycosidases
1 1 1 0 SCOP 69572 Activating enzymes of the ubiquitin-like proteins
1 1 1 0 SCOP 144210 Nop10-like SnoRNP
1 1 1 0 SCOP 89895 FYSH domain
1 1 1 0 SCOP 54897 Protease propeptides/inhibitors
1 1 1 1 SCOP 53774 Glutaminase/Asparaginase
1 1 1 0 SCOP 51306 LexA/Signal peptidase
1 1 1 0 SCOP 47819 HRDC-like
1 1 1 0 SCOP 48662 Ribosomal protein L39e
1 1 1 1 SCOP 52972 ITPase-like
1 1 1 0 SCOP 51126 Pectin lyase-like
1 1 1 1 SCOP 54919 Nucleoside diphosphate kinase, NDK
1 1 1 0 SCOP 110849 ParB/Sulfiredoxin
1 1 1 0 SCOP 49777 PEBP-like
1 1 1 0 SCOP 103486 V-type ATP synthase subunit C
1 1 1 0 SCOP 143870 PF0523-like
1 1 1 1 SCOP 56529 FAH
1 1 1 0 SCOP 64153 YjeF N-terminal domain-like
1 1 1 0 SCOP 55159 eIF1-like
1 1 1 0 SCOP 55008 HMA, heavy metal-associated domain
1 1 1 0 SCOP 55961 Bet v1-like
1 1 1 0 SCOP 46924 RNA polymerase subunit RPB10
1 1 1 0 SCOP 69618 HemD-like
1 1 1 1 SCOP 143447 AMMECR1-like
1 1 1 1 SCOP 103378 2-methylcitrate dehydratase PrpD
1 1 1 0 SCOP 63562 RPB6/omega subunit-like
1 1 1 0 SCOP 81442 Cytochrome c oxidase subunit I-like
1 1 1 1 SCOP 81342 Transmembrane di-heme cytochromes
1 1 1 0 SCOP 81648 a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
1 1 1 1 SCOP 111038 YjbQ-like
1 1 1 0 SCOP 55040 Molybdenum cofactor biosynthesis protein C, MoaC
1 1 1 0 SCOP 143243 Nqo5-like
1 1 1 0 SCOP 144020 FdhE-like
1 1 1 0 SCOP 81324 Voltage-gated potassium channels
1 1 1 0 SCOP 51717 Dihydropteroate synthetase-like
1 1 1 0 SCOP 102712 JAB1/MPN domain
1 1 1 0 SCOP 118196 YaeB-like
1 1 1 0 SCOP 56266 DmpA/ArgJ-like
1 1 1 0 SCOP 58100 Bacterial hemolysins
1 1 1 1 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
1 1 1 0 SCOP 117916 Fe-S cluster assembly (FSCA) domain-like
1 1 1 0 SCOP 56524 Oxidoreductase molybdopterin-binding domain
1 1 1 0 SCOP 56349 DNA breaking-rejoining enzymes
1 1 1 0 SCOP 103256 Hypothetical protein TM0160
1 1 1 0 SCOP 46767 Methylated DNA-protein cysteine methyltransferase, C-terminal domain
1 1 1 0 SCOP 49503 Cupredoxins
1 1 1 0 SCOP 101744 Rof/RNase P subunit-like
1 1 1 1 SCOP 64167 SurE-like
1 1 1 0 SCOP 117782 YbjQ-like
1 1 1 0 SCOP 55154 CYTH-like phosphatases
1 1 1 1 SCOP 81340 Clc chloride channel
1 1 1 0 SCOP 161111 Cation efflux protein transmembrane domain-like
1 1 1 0 SCOP 54690 Molybdopterin synthase subunit MoaE
1 1 1 0 SCOP 141000 Glu-tRNAGln amidotransferase C subunit
1 1 1 1 SCOP 56762 HydB/Nqo4-like
1 1 1 0 SCOP 111304 Recombination protein RecR
1 1 1 0 SCOP 140663 TTHA0068-like
1 1 1 0 SCOP 50800 PK beta-barrel domain-like
1 1 1 0 SCOP 69796 Thymidylate synthase-complementing protein Thy1
1 1 1 1 SCOP 53732 Aconitase iron-sulfur domain
1 1 1 1 SCOP 103365 Hypothetical protein PH1602
1 1 1 0 SCOP 52733 Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
1 1 1 1 SCOP 56219 DNase I-like
1 1 1 0 SCOP 117396 TM1631-like
1 1 1 0 SCOP 54975 Acylphosphatase/BLUF domain-like
1 1 1 0 SCOP 158997 Trm112p-like
1 1 1 1 SCOP 82544 GckA/TtuD-like
1 1 1 0 SCOP 144052 Thermophilic metalloprotease-like
1 1 1 0 SCOP 89028 Cobalamin adenosyltransferase-like
1 1 1 0 SCOP 89095 GatB/YqeY motif
1 1 1 0 SCOP 101307 YutG-like
1 1 1 1 SCOP 103025 Folate-binding domain
1 1 1 1 SCOP 56747 Prim-pol domain
1 1 1 0 SCOP 57802 Rubredoxin-like
1 1 1 1 SCOP 117457 FumA C-terminal domain-like
1 1 1 1 SCOP 53182 Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
1 1 1 1 SCOP 51703 Cobalamin (vitamin B12)-dependent enzymes
1 1 1 1 SCOP 111326 Urocanase
1 1 1 1 SCOP 51219 TRAP-like
1 1 1 1 SCOP 141130 Acetamidase/Formamidase-like
1 1 1 0 SCOP 81593 Nucleotidyltransferase substrate binding subunit/domain
1 1 1 0 SCOP 50331 MOP-like
1 1 1 0 SCOP 103247 TT1751-like
1 1 1 0 SCOP 103501 Respiratory nitrate reductase 1 gamma chain
1 1 1 0 SCOP 47781 RuvA domain 2-like
1 1 1 1 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
1 1 1 1 SCOP 56726 DNA topoisomerase IV, alpha subunit
1 1 1 0 SCOP 46950 Double-stranded DNA-binding domain
1 1 1 0 SCOP 74784 Translin
1 1 1 1 SCOP 89124 Nop domain
1 1 1 0 SCOP 111321 AF1104-like
1 1 1 1 SCOP 142535 AF0625-like
1 1 1 1 SCOP 111249 Sulfolobus fructose-1,6-bisphosphatase-like
1 1 1 0 SCOP 158436 Ta0600-like
1 1 1 0 SCOP 160350 Rnp2-like
1 1 1 0 SCOP 54984 eEF-1beta-like
1 1 1 1 SCOP 69819 MTH1598-like
1 1 1 0 SCOP 55287 RPB5-like RNA polymerase subunit
1 1 1 0 SCOP 116820 Rps17e-like
1 1 1 0 SCOP 160374 RplX-like
1 1 1 1 SCOP 102462 Peptidyl-tRNA hydrolase II
1 1 1 0 SCOP 158372 AF1782-like
1 1 1 0 SCOP 69695 SRP19
1 1 1 0 SCOP 160363 MTH889-like
1 1 1 0 SCOP 110455 Toprim domain
1 1 1 1 SCOP 103165 Ta1353-like
1 1 1 1 SCOP 52777 CoA-dependent acyltransferases
1 1 1 0 SCOP 48008 GntR ligand-binding domain-like
1 1 1 1 SCOP 52743 Subtilisin-like
1 1 1 0 SCOP 46589 tRNA-binding arm
1 1 1 0 SCOP 50156 PDZ domain-like
1 1 1 1 SCOP 51690 Nicotinate/Quinolinate PRTase C-terminal domain-like
1 1 1 0 SCOP 55103 FAD-linked oxidases, C-terminal domain
1 1 1 0 SCOP 56176 FAD-binding/transporter-associated domain-like
1 1 1 0 SCOP 82114 Riboflavin kinase-like
1 1 1 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 0 SCOP 160991 CV3147-like
1 1 1 0 SCOP 102645 CoaB-like
1 1 1 0 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 0 SCOP 48019 post-AAA+ oligomerization domain-like
1 1 1 0 SCOP 52935 PK C-terminal domain-like
1 1 1 0 SCOP 52009 Phosphohistidine domain
1 1 1 0 SCOP 57903 FYVE/PHD zinc finger
1 1 1 0 SCOP 49464 Carboxypeptidase regulatory domain-like
1 1 1 1 SCOP 52418 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
1 1 1 0 SCOP 51011 Glycosyl hydrolase domain
1 1 1 1 SCOP 50621 Alanine racemase C-terminal domain-like
1 1 1 0 SCOP 51294 Hedgehog/intein (Hint) domain
1 1 1 1 SCOP 54719 Fe,Mn superoxide dismutase (SOD), C-terminal domain
1 1 1 0 SCOP 52021 Carbamoyl phosphate synthetase, small subunit N-terminal domain
1 1 1 0 SCOP 57825 Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
1 1 1 0 SCOP 63737 Leukotriene A4 hydrolase N-terminal domain
1 1 1 0 SCOP 81631 PAP/OAS1 substrate-binding domain
1 1 1 0 SCOP 46934 UBA-like
1 1 1 0 SCOP 160240 Cation efflux protein cytoplasmic domain-like
1 1 1 0 SCOP 47648 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
1 1 1 1 SCOP 56327 LDH C-terminal domain-like
1 1 1 0 SCOP 69075 Glutamyl tRNA-reductase dimerization domain
1 1 1 0 SCOP 75689 Zinc-binding domain of translation initiation factor 2 beta
1 1 1 0 SCOP 100966 Translation initiation factor 2 beta, aIF2beta, N-terminal domain
1 1 1 0 SCOP 54768 dsRNA-binding domain-like
1 1 1 0 SCOP 47794 Rad51 N-terminal domain-like
1 1 1 0 SCOP 54373 FAD-linked reductases, C-terminal domain
1 1 1 1 SCOP 158702 Sec63 N-terminal domain-like
1 1 1 0 SCOP 117892 Band 7/SPFH domain
1 1 1 0 SCOP 54782 Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
1 1 1 0 SCOP 101852 Bacterial fluorinating enzyme, C-terminal domain
1 1 1 1 SCOP 143975 IlvD/EDD N-terminal domain-like
1 1 1 0 SCOP 54675 Nicotinate/Quinolinate PRTase N-terminal domain-like
1 1 1 1 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
1 1 1 1 SCOP 47446 Signal peptide-binding domain
1 1 1 1 SCOP 56542 Substrate-binding domain of HMG-CoA reductase
1 1 1 0 SCOP 102522 Bacterial fluorinating enzyme, N-terminal domain
1 1 1 0 SCOP 116742 eIF2alpha middle domain-like
1 1 1 0 SCOP 48108 Carbamoyl phosphate synthetase, large subunit connection domain
1 1 1 0 SCOP 116846 MIT domain
1 1 1 0 SCOP 55481 N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
1 1 1 0 SCOP 88798 N-terminal, heterodimerisation domain of RBP7 (RpoE)
1 1 1 0 SCOP 88688 Families 57/38 glycoside transferase middle domain
1 1 1 0 SCOP 54368 Glutamine synthetase, N-terminal domain
1 1 1 1 SCOP 55261 GAD domain-like
1 1 1 0 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 1 SCOP 46609 Fe,Mn superoxide dismutase (SOD), N-terminal domain
1 1 1 1 SCOP 117018 ATP-dependent DNA ligase DNA-binding domain
1 1 1 0 SCOP 69742 Glutamyl tRNA-reductase catalytic, N-terminal domain
1 1 1 0 SCOP 110993 eIF-2-alpha, C-terminal domain
1 1 1 0 SCOP 75615 Siroheme synthase middle domains-like
1 1 1 0 SCOP 160527 V-type ATPase subunit E-like
1 1 1 0 SCOP 159065 Dom34/Pelota N-terminal domain-like
1 1 1 1 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 55003 PAP/Archaeal CCA-adding enzyme, C-terminal domain
1 1 1 0 SCOP 64586 C-terminal domain of ProRS
1 1 1 0 SCOP 55035 NAD-binding domain of HMG-CoA reductase
1 1 1 0 SCOP 75445 D-ribose-5-phosphate isomerase (RpiA), lid domain
1 1 1 0 SCOP 101790 Aminomethyltransferase beta-barrel domain
1 1 1 0 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 0 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 1 SCOP 54893 Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain
1 1 1 0 SCOP 109728 Hypothetical protein AF0491, middle domain
1 1 1 0 SCOP 141300 GatD N-terminal domain-like
1 1 1 0 SCOP 140914 PriB N-terminal domain-like
1 1 1 0 SCOP 57770 Methionyl-tRNA synthetase (MetRS), Zn-domain
1 1 1 0 SCOP 55267 tRNA-intron endonuclease N-terminal domain-like

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The following superfamilies have one or more weak hits:

SCOP superfamily ABC transporter transmembrane region
SCOP superfamily GAT-like domain
SCOP superfamily Sigma2 domain of RNA polymerase sigma factors
SCOP superfamily Sigma3 and sigma4 domains of RNA polymerase sigma factors
SCOP superfamily Mechanosensitive channel protein MscS (YggB), transmembrane region
SCOP superfamily GIY-YIG endonuclease
SCOP superfamily Hypothetical protein MTH1880
SCOP superfamily Small protein B (SmpB)
SCOP superfamily Variable surface antigen VlsE
SCOP superfamily Cell wall binding repeat
SCOP superfamily YWTD domain
SCOP superfamily Apolipoprotein A-I
SCOP superfamily Methyl-accepting chemotaxis protein (MCP) signaling domain
SCOP superfamily SNARE fusion complex
SCOP superfamily Tropomyosin
SCOP superfamily RING/U-box
SCOP superfamily delta-Endotoxin (insectocide), N-terminal domain
SCOP superfamily Upper collar protein gp10 (connector protein)
SCOP superfamily PheT/TilS domain
SCOP superfamily Tetrahydrobiopterin biosynthesis enzymes-like
SCOP superfamily SH2 domain
SCOP superfamily Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
SCOP superfamily Nucleotide cyclase
SCOP superfamily Tubby C-terminal domain-like
SCOP superfamily UBC-like
SCOP superfamily LigB-like
SCOP superfamily Methylglyoxal synthase-like
SCOP superfamily L domain-like
SCOP superfamily PA domain
SCOP superfamily cAMP-binding domain-like
SCOP superfamily WD40 repeat-like
SCOP superfamily YVTN repeat-like/Quinoprotein amine dehydrogenase
SCOP superfamily Galactose oxidase, central domain
SCOP superfamily Thermostable phytase (3-phytase)
SCOP superfamily Lipocalins
SCOP superfamily Baculovirus p35 protein
SCOP superfamily C2 domain (Calcium/lipid-binding domain, CaLB)
SCOP superfamily CBD9-like
SCOP superfamily Cadherin-like
SCOP superfamily ARM repeat
SCOP superfamily Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
SCOP superfamily PAH2 domain
SCOP superfamily t-snare proteins
SCOP superfamily EF-hand
SCOP superfamily Apolipoprotein
SCOP superfamily T4 endonuclease V
SCOP superfamily PspA lactotransferrin-binding region
SCOP superfamily Gam-like
SCOP superfamily YfgJ-like
SCOP superfamily SNF-like
SCOP superfamily Photosystem II reaction center protein L, PsbL
SCOP superfamily YcgL-like
SCOP superfamily YegP-like
SCOP superfamily FomD-like
SCOP superfamily Tex N-terminal region-like
SCOP superfamily MG296-like
SCOP superfamily YheA/YmcA-like
SCOP superfamily BH2638-like
SCOP superfamily HIT/MYND zinc finger-like
SCOP superfamily CSL zinc finger
SCOP superfamily NOB1 zinc finger-like
SCOP superfamily Rhomboid-like
SCOP superfamily L,D-transpeptidase pre-catalytic domain-like
SCOP superfamily XisI-like
SCOP superfamily Duffy binding domain-like
SCOP superfamily Type III secretion system domain
SCOP superfamily HSP33 redox switch-like
SCOP superfamily Nucleoporin domain
SCOP superfamily Triger factor/SurA peptide-binding domain-like
SCOP superfamily VPS9 domain
SCOP superfamily HBS1-like domain
SCOP superfamily Colicin D/E5 nuclease domain
SCOP superfamily Surface presentation of antigens (SPOA)

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.