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  Home > Genomes > Superfamily assignments for Candidatus Protochlamydia amoebophila UWE25


Candidatus Protochlamydia amoebophila UWE25 superfamily assignments

Taxonomy
Taxonomy browser entry

Bacteria; PVC group; Chlamydiae; Chlamydiia; Parachlamydiales; Parachlamydiaceae; Candidatus Protochlamydia; Candidatus Protochlamydia amoebophila; Candidatus Protochlamydia amoebophila UWE25

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Fasta format sequences
Domain assignments

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Assignment statistics

Sequences: 2031 total
1147 (56 %) with assignment
325 average length
53 % amino acid coverage
Domains: 1748 total
538 unique superfamilies
292 unique families
306 average length
3.2 average superfamily size
69 % formed by duplication
Domain combinations: 314 domain pairs
693 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies
139 113 53 7 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
90 61 20 0 SCOP 52047 RNI-like
56 35 16 0 SCOP 48452 TPR-like
42 42 15 0 SCOP 54695 POZ domain
37 27 22 3 SCOP 50249 Nucleic acid-binding proteins
37 37 21 8 SCOP 51735 NAD(P)-binding Rossmann-fold domains
26 26 7 4 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
24 23 7 4 SCOP 53448 Nucleotide-diphospho-sugar transferases
23 23 3 4 SCOP 53098 Ribonuclease H-like
17 12 8 0 SCOP 81901 HCP-like
16 10 5 2 SCOP 53067 Actin-like ATPase domain
16 14 13 6 SCOP 54211 Ribosomal protein S5 domain 2-like
16 16 11 1 SCOP 55681 Class II aaRS and biotin synthetases
15 15 3 1 SCOP 52833 Thioredoxin-like
13 13 4 0 SCOP 53474 alpha/beta-Hydrolases
13 13 4 3 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
12 7 6 4 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
12 12 2 4 SCOP 53383 PLP-dependent transferases
12 12 4 0 SCOP 46689 Homeodomain-like
12 12 4 1 SCOP 56349 DNA breaking-rejoining enzymes
12 11 9 0 SCOP 81383 F-box domain
11 11 6 1 SCOP 51905 FAD/NAD(P)-binding domain
11 11 4 0 SCOP 56784 HAD-like
11 11 10 1 SCOP 52374 Nucleotidylyl transferase
11 10 8 0 SCOP 46785 "Winged helix" DNA-binding domain
11 11 5 1 SCOP 103473 MFS general substrate transporter
11 10 6 0 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
10 10 3 1 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
10 10 4 3 SCOP 52096 ClpP/crotonase
10 10 9 0 SCOP 52058 L domain-like
10 3 2 0 SCOP 82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
9 9 3 4 SCOP 51569 Aldolase
9 9 3 1 SCOP 161098 MetI-like
9 8 7 2 SCOP 50447 Translation proteins
8 8 2 3 SCOP 55120 Pseudouridine synthase
8 8 3 1 SCOP 53850 Periplasmic binding protein-like II
8 8 3 0 SCOP 55811 Nudix
8 8 2 1 SCOP 102114 Radical SAM enzymes
8 6 3 1 SCOP 111369 HlyD-like secretion proteins
8 7 7 0 SCOP 47781 RuvA domain 2-like
8 4 3 1 SCOP 82866 Multidrug efflux transporter AcrB transmembrane domain
7 6 6 2 SCOP 56059 Glutathione synthetase ATP-binding domain-like
7 7 4 2 SCOP 75217 alpha/beta knot
7 7 2 0 SCOP 56281 Metallo-hydrolase/oxidoreductase
7 6 5 0 SCOP 48403 Ankyrin repeat
7 7 6 2 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
7 7 2 0 SCOP 140931 Fic-like
7 4 3 1 SCOP 54980 EF-G C-terminal domain-like
6 6 4 2 SCOP 50104 Translation proteins SH3-like domain
6 6 1 3 SCOP 47240 Ferritin-like
6 6 4 0 SCOP 50978 WD40 repeat-like
6 6 1 0 SCOP 47413 lambda repressor-like DNA-binding domains
6 6 3 0 SCOP 56925 OMPA-like
6 5 5 0 SCOP 82171 DPP6 N-terminal domain-like
6 6 4 0 SCOP 53244 MurD-like peptide ligases, peptide-binding domain
6 6 6 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
6 4 4 0 SCOP 82185 Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
6 6 4 2 SCOP 53623 MurD-like peptide ligases, catalytic domain
6 2 1 0 SCOP 53738 Phosphoglucomutase, first 3 domains
6 3 2 0 SCOP 82714 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
5 5 3 1 SCOP 69593 Glycerol-3-phosphate (1)-acyltransferase
5 5 3 1 SCOP 55174 Alpha-L RNA-binding motif
5 5 3 2 SCOP 51161 Trimeric LpxA-like enzymes
5 5 3 2 SCOP 48150 DNA-glycosylase
5 5 4 0 SCOP 54292 2Fe-2S ferredoxin-like
5 5 5 2 SCOP 53187 Zn-dependent exopeptidases
5 5 4 0 SCOP 109604 HD-domain/PDEase-like
5 5 4 2 SCOP 51445 (Trans)glycosidases
5 5 1 1 SCOP 51197 Clavaminate synthase-like
5 5 4 1 SCOP 54631 CBS-domain pair
5 5 5 0 SCOP 141571 Pentapeptide repeat-like
5 5 2 1 SCOP 56954 Outer membrane efflux proteins (OEP)
5 2 2 1 SCOP 63411 LuxS/MPP-like metallohydrolase
5 4 3 0 SCOP 50156 PDZ domain-like
5 5 1 0 SCOP 103190 Sensory domain-like
5 5 3 3 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
4 4 3 1 SCOP 52317 Class I glutamine amidotransferase-like
4 4 4 1 SCOP 56112 Protein kinase-like (PK-like)
4 4 3 3 SCOP 53697 SIS domain
4 4 4 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
4 4 3 1 SCOP 55920 Creatinase/aminopeptidase
4 4 3 0 SCOP 56300 Metallo-dependent phosphatases
4 4 4 0 SCOP 52402 Adenine nucleotide alpha hydrolases-like
4 4 2 1 SCOP 50129 GroES-like
4 4 3 1 SCOP 51306 LexA/Signal peptidase
4 4 4 0 SCOP 52954 Class II aaRS ABD-related
4 4 3 1 SCOP 102405 MCP/YpsA-like
4 3 3 0 SCOP 56601 beta-lactamase/transpeptidase-like
4 4 2 1 SCOP 50494 Trypsin-like serine proteases
4 4 4 1 SCOP 51230 Single hybrid motif
4 3 3 0 SCOP 103481 Multidrug resistance efflux transporter EmrE
4 3 3 1 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
4 4 3 2 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
4 3 3 0 SCOP 54106 LysM domain
4 4 4 1 SCOP 56719 Type II DNA topoisomerase
4 3 3 1 SCOP 52210 Succinyl-CoA synthetase domains
4 3 3 0 SCOP 63380 Riboflavin synthase domain-like
4 3 2 0 SCOP 54849 GroEL-intermediate domain like
3 3 2 1 SCOP 53927 Cytidine deaminase-like
3 3 1 1 SCOP 51658 Xylose isomerase-like
3 3 1 1 SCOP 75620 Release factor
3 2 2 0 SCOP 81333 F1F0 ATP synthase subunit C
3 2 2 0 SCOP 52821 Rhodanese/Cell cycle control phosphatase
3 3 1 0 SCOP 54637 Thioesterase/thiol ester dehydrase-isomerase
3 3 2 0 SCOP 81345 ABC transporter involved in vitamin B12 uptake, BtuC
3 3 1 0 SCOP 54060 His-Me finger endonucleases
3 2 2 0 SCOP 48371 ARM repeat
3 3 3 2 SCOP 56672 DNA/RNA polymerases
3 2 2 0 SCOP 81296 E set domains
3 3 3 0 SCOP 88723 PIN domain-like
3 3 3 1 SCOP 54534 FKBP-like
3 2 2 0 SCOP 46626 Cytochrome c
3 3 3 0 SCOP 52151 FabD/lysophospholipase-like
3 3 3 1 SCOP 55931 Glutamine synthetase/guanido kinase
3 3 1 0 SCOP 69635 Type III secretory system chaperone-like
3 3 3 0 SCOP 46955 Putative DNA-binding domain
3 3 1 0 SCOP 143120 YefM-like
3 3 1 0 SCOP 143011 RelE-like
3 3 2 0 SCOP 54523 Pili subunits
3 3 3 1 SCOP 81301 Nucleotidyltransferase
3 3 2 0 SCOP 53300 vWA-like
3 3 2 0 SCOP 159501 EreA/ChaN-like
3 2 2 0 SCOP 49879 SMAD/FHA domain
3 3 3 0 SCOP 88697 PUA domain-like
3 2 2 2 SCOP 53901 Thiolase-like
3 3 3 1 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
3 3 3 1 SCOP 55186 ThrRS/AlaRS common domain
3 3 1 1 SCOP 55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
3 3 3 0 SCOP 52343 Ferredoxin reductase-like, C-terminal NADP-linked domain
3 3 2 1 SCOP 90123 ABC transporter transmembrane region
3 3 2 0 SCOP 46589 tRNA-binding arm
3 3 2 1 SCOP 48592 GroEL equatorial domain-like
3 1 1 0 SCOP 55979 DNA clamp
3 3 2 0 SCOP 56176 FAD-binding/transporter-associated domain-like
3 3 3 0 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
3 3 2 1 SCOP 48019 post-AAA+ oligomerization domain-like
3 3 3 2 SCOP 52922 TK C-terminal domain-like
3 3 3 0 SCOP 81665 Calcium ATPase, transmembrane domain M
3 2 2 1 SCOP 52440 PreATP-grasp domain
3 3 2 1 SCOP 52029 GroEL apical domain-like
3 3 3 0 SCOP 46600 C-terminal UvrC-binding domain of UvrB
3 3 2 0 SCOP 63418 MurE/MurF N-terminal domain
3 3 3 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
3 3 3 0 SCOP 81653 Calcium ATPase, transduction domain A
3 3 2 1 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 1 1 SCOP 51556 Metallo-dependent hydrolases
2 2 1 1 SCOP 53271 PRTase-like
2 2 1 0 SCOP 55594 HPr-like
2 2 1 0 SCOP 57829 Zn-binding ribosomal proteins
2 2 1 1 SCOP 53790 Tetrapyrrole methylase
2 2 2 1 SCOP 53613 Ribokinase-like
2 2 1 1 SCOP 56420 Peptide deformylase
2 2 2 1 SCOP 81606 PP2C-like
2 2 1 2 SCOP 51366 Ribulose-phoshate binding barrel
2 2 1 1 SCOP 53137 Translational machinery components
2 2 2 1 SCOP 46946 S13-like H2TH domain
2 2 1 0 SCOP 89447 AbrB/MazE/MraZ-like
2 2 1 0 SCOP 52218 Flavoproteins
2 2 2 0 SCOP 100950 NagB/RpiA/CoA transferase-like
2 2 1 0 SCOP 143800 L28p-like
2 2 2 0 SCOP 47336 ACP-like
2 2 2 2 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
2 2 2 0 SCOP 82649 SufE/NifU
2 2 2 1 SCOP 52980 Restriction endonuclease-like
2 2 2 0 SCOP 109998 Triger factor/SurA peptide-binding domain-like
2 2 1 1 SCOP 53633 Carbamate kinase-like
2 2 1 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
2 2 2 1 SCOP 55821 YrdC/RibB
2 2 1 1 SCOP 51283 dUTPase-like
2 2 2 1 SCOP 54862 4Fe-4S ferredoxins
2 2 2 1 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
2 2 1 1 SCOP 53254 Phosphoglycerate mutase-like
2 2 2 1 SCOP 55205 EPT/RTPC-like
2 2 1 1 SCOP 51395 FMN-linked oxidoreductases
2 2 1 1 SCOP 48576 Terpenoid synthases
2 2 2 1 SCOP 51419 PLP-binding barrel
2 2 2 1 SCOP 56801 Acetyl-CoA synthetase-like
2 2 1 0 SCOP 55315 L30e-like
2 2 2 1 SCOP 52799 (Phosphotyrosine protein) phosphatases II
2 2 1 1 SCOP 56322 ADC synthase
2 2 1 0 SCOP 54001 Cysteine proteinases
2 2 1 0 SCOP 55144 LigT-like
2 1 1 0 SCOP 54506 Diaminopimelate epimerase-like
2 2 2 0 SCOP 57997 Tropomyosin
2 2 1 2 SCOP 52972 ITPase-like
2 2 2 0 SCOP 48208 Six-hairpin glycosidases
2 2 2 1 SCOP 54919 Nucleoside diphosphate kinase, NDK
2 2 1 1 SCOP 53056 beta-carbonic anhydrase, cab
2 2 1 0 SCOP 57850 RING/U-box
2 2 2 0 SCOP 55008 HMA, heavy metal-associated domain
2 2 2 1 SCOP 81442 Cytochrome c oxidase subunit I-like
2 2 1 1 SCOP 101960 Stabilizer of iron transporter SufD
2 2 2 1 SCOP 55620 Tetrahydrobiopterin biosynthesis enzymes-like
2 2 2 1 SCOP 52172 CheY-like
2 2 2 0 SCOP 52091 SpoIIaa-like
2 2 2 2 SCOP 53795 PEP carboxykinase-like
2 2 2 0 SCOP 103642 Sec-C motif
2 2 2 2 SCOP 51998 PFL-like glycyl radical enzymes
2 2 2 0 SCOP 47598 Ribbon-helix-helix
2 2 2 0 SCOP 57783 Zinc beta-ribbon
2 2 2 0 SCOP 82771 GIY-YIG endonuclease
2 2 1 1 SCOP 53807 "Helical backbone" metal receptor
2 2 2 0 SCOP 89550 PHP domain-like
2 2 2 0 SCOP 46894 C-terminal effector domain of the bipartite response regulators
2 1 1 0 SCOP 69796 Thymidylate synthase-complementing protein Thy1
2 2 2 0 SCOP 50969 YVTN repeat-like/Quinoprotein amine dehydrogenase
2 2 1 1 SCOP 118215 Proton glutamate symport protein
2 1 1 0 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
2 2 2 0 SCOP 55804 Phoshotransferase/anion transport protein
2 2 1 0 SCOP 48295 TrpR-like
2 2 1 0 SCOP 55785 PYP-like sensor domain (PAS domain)
2 2 1 1 SCOP 51604 Enolase C-terminal domain-like
2 1 1 0 SCOP 56024 Phospholipase D/nuclease
2 2 1 0 SCOP 103515 Autotransporter
2 2 2 0 SCOP 47592 SWIB/MDM2 domain
2 2 2 0 SCOP 158791 MgtE N-terminal domain-like
2 2 2 1 SCOP 52777 CoA-dependent acyltransferases
2 2 1 0 SCOP 81923 Double Clp-N motif
2 2 1 0 SCOP 47384 Homodimeric domain of signal transducing histidine kinase
2 2 2 0 SCOP 52009 Phosphohistidine domain
2 2 1 0 SCOP 55973 S-adenosylmethionine synthetase
2 1 1 0 SCOP 53681 Aspartate/glutamate racemase
2 2 2 0 SCOP 82679 N-utilization substance G protein NusG, N-terminal domain
2 2 2 1 SCOP 56037 PheT/TilS domain
2 2 2 0 SCOP 51011 Glycosyl hydrolase domain
2 2 2 1 SCOP 161093 MgtE membrane domain-like
2 2 2 1 SCOP 140990 FtsH protease domain-like
2 2 2 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
2 2 1 1 SCOP 54826 Enolase N-terminal domain-like
2 2 2 0 SCOP 81891 Poly A polymerase C-terminal region-like
2 2 2 0 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
2 2 1 0 SCOP 51984 MurCD N-terminal domain
2 2 2 0 SCOP 54768 dsRNA-binding domain-like
2 1 1 1 SCOP 56053 Ribosomal protein L6
2 2 1 0 SCOP 55957 Phosphoglucomutase, C-terminal domain
2 2 1 0 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 2 1 SCOP 81271 TGS-like
2 1 1 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
2 1 1 0 SCOP 54713 Elongation factor Ts (EF-Ts), dimerisation domain
2 1 1 0 SCOP 55666 Ribonuclease PH domain 2-like
2 2 2 0 SCOP 56519 Penicillin binding protein dimerisation domain
1 1 1 1 SCOP 56731 DNA primase core
1 1 1 0 SCOP 48013 NusB-like
1 1 1 1 SCOP 81338 Aquaporin-like
1 1 1 1 SCOP 53167 Purine and uridine phosphorylases
1 1 1 1 SCOP 74982 Small protein B (SmpB)
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 0 SCOP 53178 Peptidyl-tRNA hydrolase-like
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 0 SCOP 46911 Ribosomal protein S18
1 1 1 1 SCOP 52141 Uracil-DNA glycosylase-like
1 1 1 1 SCOP 75304 Amidase signature (AS) enzymes
1 1 1 0 SCOP 143597 YojJ-like
1 1 1 1 SCOP 111331 NAD kinase/diacylglycerol kinase-like
1 1 1 0 SCOP 54197 HIT-like
1 1 1 0 SCOP 82607 YbaB-like
1 1 1 0 SCOP 89919 Ribosome-binding factor A, RbfA
1 1 1 1 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
1 1 1 1 SCOP 54570 Ribosomal protein S19
1 1 1 0 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 1 SCOP 55282 RL5-like
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 0 SCOP 52080 Ribosomal proteins L15p and L18e
1 1 1 0 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 0 SCOP 57840 Ribosomal protein L36
1 1 1 1 SCOP 64263 Prokaryotic ribosomal protein L17
1 1 1 1 SCOP 64182 DHH phosphoesterases
1 1 1 0 SCOP 143034 L35p-like
1 1 1 1 SCOP 74731 Ribosomal protein L20
1 1 1 0 SCOP 56214 4'-phosphopantetheinyl transferase
1 1 1 1 SCOP 53784 Phosphofructokinase
1 1 1 0 SCOP 53597 Dihydrofolate reductase-like
1 1 1 0 SCOP 141091 L21p-like
1 1 1 0 SCOP 110324 Ribosomal L27 protein-like
1 1 1 0 SCOP 51695 PLC-like phosphodiesterases
1 1 1 1 SCOP 53748 Phosphoglycerate kinase
1 1 1 1 SCOP 75625 YebC-like
1 1 1 0 SCOP 47729 IHF-like DNA-binding proteins
1 1 1 0 SCOP 160369 Ribosomal protein L10-like
1 1 1 0 SCOP 46992 Ribosomal protein S20
1 1 1 1 SCOP 52943 ATP synthase (F1-ATPase), gamma subunit
1 1 1 1 SCOP 55068 Peptide methionine sulfoxide reductase
1 1 1 0 SCOP 109755 PhoU-like
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 0 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 1 SCOP 55194 Ribosome recycling factor, RRF
1 1 1 0 SCOP 54565 Ribosomal protein S16
1 1 1 0 SCOP 51316 Mss4-like
1 1 1 0 SCOP 69765 IpsF-like
1 1 1 0 SCOP 51730 FAD-linked oxidoreductase
1 1 1 1 SCOP 48557 L-aspartase-like
1 1 1 0 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
1 1 1 1 SCOP 103263 Chorismate synthase, AroC
1 1 1 1 SCOP 53720 ALDH-like
1 1 1 0 SCOP 89360 HesB-like domain
1 1 1 1 SCOP 51713 tRNA-guanine transglycosylase
1 1 1 0 SCOP 50715 Ribosomal protein L25-like
1 1 1 1 SCOP 56770 HydA/Nqo6-like
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 1 SCOP 64005 Undecaprenyl diphosphate synthase
1 1 1 1 SCOP 142695 RibA-like
1 1 1 1 SCOP 56655 Carbohydrate phosphatase
1 1 1 1 SCOP 102705 NIF3 (NGG1p interacting factor 3)-like
1 1 1 1 SCOP 55298 YjgF-like
1 1 1 1 SCOP 52121 Lumazine synthase
1 1 1 1 SCOP 81452 Cytochrome c oxidase subunit III-like
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 1 SCOP 56796 Dehydroquinate synthase-like
1 1 1 0 SCOP 54995 Ribosomal protein S6
1 1 1 1 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
1 1 1 0 SCOP 49764 HSP20-like chaperones
1 1 1 0 SCOP 50182 Sm-like ribonucleoproteins
1 1 1 0 SCOP 52949 Macro domain-like
1 1 1 1 SCOP 51430 NAD(P)-linked oxidoreductase
1 1 1 1 SCOP 48256 Citrate synthase
1 1 1 1 SCOP 69500 DTD-like
1 1 1 1 SCOP 102886 Coproporphyrinogen III oxidase
1 1 1 1 SCOP 51726 UROD/MetE-like
1 1 1 1 SCOP 50891 Cyclophilin-like
1 1 1 0 SCOP 48317 Acid phosphatase/Vanadium-dependent haloperoxidase
1 1 1 1 SCOP 53328 Formyltransferase
1 1 1 0 SCOP 54427 NTF2-like
1 1 1 0 SCOP 52499 Isochorismatase-like hydrolases
1 1 1 1 SCOP 49785 Galactose-binding domain-like
1 1 1 0 SCOP 56752 D-aminoacid aminotransferase-like PLP-dependent enzymes
1 1 1 0 SCOP 74650 Galactose mutarotase-like
1 1 1 0 SCOP 56317 Carbon-nitrogen hydrolase
1 1 1 0 SCOP 54928 RNA-binding domain, RBD
1 1 1 1 SCOP 51182 RmlC-like cupins
1 1 1 1 SCOP 49329 Cu,Zn superoxide dismutase-like
1 1 1 0 SCOP 55781 GAF domain-like
1 1 1 0 SCOP 110849 ParB/Sulfiredoxin
1 1 1 0 SCOP 50044 SH3-domain
1 1 1 0 SCOP 81343 Fumarate reductase respiratory complex transmembrane subunits
1 1 1 0 SCOP 55257 RBP11-like subunits of RNA polymerase
1 1 1 1 SCOP 64153 YjeF N-terminal domain-like
1 1 1 0 SCOP 55159 eIF1-like
1 1 1 0 SCOP 56399 ADP-ribosylation
1 1 1 0 SCOP 69618 HemD-like
1 1 1 1 SCOP 52283 Formate/glycerate dehydrogenase catalytic domain-like
1 1 1 0 SCOP 52788 Phosphotyrosine protein phosphatases I
1 1 1 1 SCOP 53800 Chelatase
1 1 1 0 SCOP 46458 Globin-like
1 1 1 0 SCOP 144091 Rhomboid-like
1 1 1 0 SCOP 69118 AhpD-like
1 1 1 0 SCOP 143243 Nqo5-like
1 1 1 0 SCOP 143422 Transposase IS200-like
1 1 1 1 SCOP 51717 Dihydropteroate synthetase-like
1 1 1 0 SCOP 54593 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
1 1 1 0 SCOP 64438 CNF1/YfiH-like putative cysteine hydrolases
1 1 1 1 SCOP 118196 YaeB-like
1 1 1 1 SCOP 52016 LeuD/IlvD-like
1 1 1 0 SCOP 143100 TTHA1013/TTHA0281-like
1 1 1 0 SCOP 117916 Fe-S cluster assembly (FSCA) domain-like
1 1 1 1 SCOP 88946 Sigma2 domain of RNA polymerase sigma factors
1 1 1 0 SCOP 160246 EspE N-terminal domain-like
1 1 1 0 SCOP 55083 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
1 1 1 0 SCOP 103256 Hypothetical protein TM0160
1 1 1 1 SCOP 46767 Methylated DNA-protein cysteine methyltransferase, C-terminal domain
1 1 1 1 SCOP 49503 Cupredoxins
1 1 1 0 SCOP 50692 ADC-like
1 1 1 0 SCOP 55166 Hedgehog/DD-peptidase
1 1 1 1 SCOP 64167 SurE-like
1 1 1 0 SCOP 143990 YbiA-like
1 1 1 0 SCOP 161111 Cation efflux protein transmembrane domain-like
1 1 1 0 SCOP 141000 Glu-tRNAGln amidotransferase C subunit
1 1 1 1 SCOP 56762 HydB/Nqo4-like
1 1 1 0 SCOP 116842 XseB-like
1 1 1 0 SCOP 54736 ClpS-like
1 1 1 1 SCOP 111304 Recombination protein RecR
1 1 1 0 SCOP 50800 PK beta-barrel domain-like
1 1 1 1 SCOP 53732 Aconitase iron-sulfur domain
1 1 1 0 SCOP 69047 Hypothetical protein YjbJ
1 1 1 0 SCOP 69065 RNase III domain-like
1 1 1 0 SCOP 55200 Translation initiation factor IF3, C-terminal domain
1 1 1 1 SCOP 143081 BB1717-like
1 1 1 0 SCOP 82689 Mechanosensitive channel protein MscS (YggB), C-terminal domain
1 1 1 0 SCOP 82153 FAS1 domain
1 1 1 0 SCOP 143456 VC0467-like
1 1 1 1 SCOP 48173 Cryptochrome/photolyase FAD-binding domain
1 1 1 1 SCOP 52425 Cryptochrome/photolyase, N-terminal domain
1 1 1 0 SCOP 50998 Quinoprotein alcohol dehydrogenase-like
1 1 1 1 SCOP 89028 Cobalamin adenosyltransferase-like
1 1 1 0 SCOP 102400 DNA polymerase III chi subunit
1 1 1 0 SCOP 89095 GatB/YqeY motif
1 1 1 0 SCOP 81330 Gated mechanosensitive channel
1 1 1 0 SCOP 103088 OmpA-like
1 1 1 1 SCOP 103025 Folate-binding domain
1 1 1 0 SCOP 101386 all-alpha NTP pyrophosphatases
1 1 1 0 SCOP 160537 SpoVG-like
1 1 1 1 SCOP 140478 LemA-like
1 1 1 0 SCOP 143631 ApbE-like
1 1 1 0 SCOP 55021 ACT-like
1 1 1 0 SCOP 140683 SP0561-like
1 1 1 0 SCOP 69322 Tricorn protease domain 2
1 1 1 0 SCOP 111384 OmpH-like
1 1 1 0 SCOP 50814 Lipocalins
1 1 1 1 SCOP 161070 SNF-like
1 1 1 0 SCOP 75138 HprK N-terminal domain-like
1 1 1 0 SCOP 101801 Surface presentation of antigens (SPOA)
1 1 1 0 SCOP 53041 Resolvase-like
1 1 1 0 SCOP 50486 FMT C-terminal domain-like
1 1 1 0 SCOP 69786 YggU-like
1 1 1 0 SCOP 50331 MOP-like
1 1 1 0 SCOP 69754 Ribosome binding protein Y (YfiA homologue)
1 1 1 0 SCOP 160104 Acetoacetate decarboxylase-like
1 1 1 0 SCOP 49452 Starch-binding domain-like
1 1 1 0 SCOP 55136 Probable bacterial effector-binding domain
1 1 1 0 SCOP 109709 KorB DNA-binding domain-like
1 1 1 0 SCOP 102198 Putative cyclase
1 1 1 1 SCOP 46565 Chaperone J-domain
1 1 1 0 SCOP 160631 SMI1/KNR4-like
1 1 1 1 SCOP 56574 Serpins
1 1 1 0 SCOP 46548 alpha-helical ferredoxin
1 1 1 0 SCOP 141523 L,D-transpeptidase catalytic domain-like
1 1 1 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
1 1 1 0 SCOP 48024 N-terminal domain of DnaB helicase
1 1 1 1 SCOP 143865 CorA soluble domain-like
1 1 1 1 SCOP 158832 Tex N-terminal region-like
1 1 1 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
1 1 1 1 SCOP 53706 Formate dehydrogenase/DMSO reductase, domains 1-3
1 1 1 1 SCOP 51246 Rudiment single hybrid motif
1 1 1 0 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
1 1 1 0 SCOP 82114 Riboflavin kinase-like
1 1 1 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 0 SCOP 69304 Tricorn protease N-terminal domain
1 1 1 0 SCOP 49344 CBD9-like
1 1 1 0 SCOP 56014 Nitrite and sulphite reductase 4Fe-4S domain-like
1 1 1 0 SCOP 160544 EscU C-terminal domain-like
1 1 1 0 SCOP 47661 t-snare proteins
1 1 1 1 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 0 SCOP 81573 F1F0 ATP synthase subunit B, membrane domain
1 1 1 0 SCOP 52935 PK C-terminal domain-like
1 1 1 0 SCOP 109635 DnaK suppressor protein DksA, alpha-hairpin domain
1 1 1 0 SCOP 118116 DNA mismatch repair protein MutL
1 1 1 0 SCOP 81336 F1F0 ATP synthase subunit A
1 1 1 0 SCOP 47789 C-terminal domain of RNA polymerase alpha subunit
1 1 1 0 SCOP 51344 Epsilon subunit of F1F0-ATP synthase N-terminal domain
1 1 1 0 SCOP 52129 Caspase-like
1 1 1 0 SCOP 55658 L9 N-domain-like
1 1 1 0 SCOP 49265 Fibronectin type III
1 1 1 1 SCOP 68923 PEP carboxykinase N-terminal domain
1 1 1 1 SCOP 56436 C-type lectin-like
1 1 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
1 1 1 0 SCOP 116726 TrkA C-terminal domain-like
1 1 1 0 SCOP 69055 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
1 1 1 1 SCOP 48334 DNA repair protein MutS, domain III
1 1 1 0 SCOP 58014 Coiled-coil domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 81464 Cytochrome c oxidase subunit II-like, transmembrane region
1 1 1 0 SCOP 57884 Ada DNA repair protein, N-terminal domain (N-Ada 10)
1 1 1 0 SCOP 142984 Nqo1 middle domain-like
1 1 1 0 SCOP 50621 Alanine racemase C-terminal domain-like
1 1 1 0 SCOP 52964 TolB, N-terminal domain
1 1 1 1 SCOP 54719 Fe,Mn superoxide dismutase (SOD), C-terminal domain
1 1 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
1 1 1 0 SCOP 49363 Purple acid phosphatase, N-terminal domain
1 1 1 0 SCOP 52075 Outer arm dynein light chain 1
1 1 1 0 SCOP 55060 GHMP Kinase, C-terminal domain
1 1 1 0 SCOP 68912 Rho N-terminal domain-like
1 1 1 0 SCOP 47979 Iron-dependent repressor protein, dimerization domain
1 1 1 0 SCOP 56425 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
1 1 1 1 SCOP 101904 GyrA/ParC C-terminal domain-like
1 1 1 0 SCOP 57863 ArfGap/RecO-like zinc finger
1 1 1 1 SCOP 143548 Serine metabolism enzymes domain
1 1 1 0 SCOP 46977 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
1 1 1 0 SCOP 48300 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
1 1 1 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
1 1 1 0 SCOP 141322 NfeD domain-like
1 1 1 0 SCOP 90209 Ran binding protein zinc finger-like
1 1 1 0 SCOP 144083 Magnesium transport protein CorA, transmembrane region
1 1 1 0 SCOP 46934 UBA-like
1 1 1 0 SCOP 160240 Cation efflux protein cytoplasmic domain-like
1 1 1 1 SCOP 56327 LDH C-terminal domain-like
1 1 1 0 SCOP 49299 PKD domain
1 1 1 0 SCOP 47823 lambda integrase-like, N-terminal domain
1 1 1 0 SCOP 100879 Lesion bypass DNA polymerase (Y-family), little finger domain
1 1 1 0 SCOP 55945 TATA-box binding protein-like
1 1 1 0 SCOP 52113 BRCT domain
1 1 1 0 SCOP 141259 CarD-like
1 1 1 0 SCOP 47794 Rad51 N-terminal domain-like
1 1 1 0 SCOP 53155 Methylated DNA-protein cysteine methyltransferase domain
1 1 1 0 SCOP 54373 FAD-linked reductases, C-terminal domain
1 1 1 0 SCOP 82861 Mechanosensitive channel protein MscS (YggB), transmembrane region
1 1 1 0 SCOP 47831 Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
1 1 1 0 SCOP 48366 Ras GEF
1 1 1 0 SCOP 48065 DBL homology domain (DH-domain)
1 1 1 0 SCOP 52413 UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
1 1 1 1 SCOP 81624 N-terminal domain of MutM-like DNA repair proteins
1 1 1 0 SCOP 54752 RecA protein, C-terminal domain
1 1 1 0 SCOP 140490 Nqo1C-terminal domain-like
1 1 1 0 SCOP 102735 Trigger factor ribosome-binding domain
1 1 1 0 SCOP 55031 Bacterial exopeptidase dimerisation domain
1 1 1 0 SCOP 46557 GreA transcript cleavage protein, N-terminal domain
1 1 1 0 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
1 1 1 1 SCOP 47446 Signal peptide-binding domain
1 1 1 0 SCOP 54991 Anticodon-binding domain of PheRS
1 1 1 1 SCOP 55271 DNA repair protein MutS, domain I
1 1 1 0 SCOP 55048 Probable ACP-binding domain of malonyl-CoA ACP transacylase
1 1 1 0 SCOP 47928 N-terminal domain of the delta subunit of the F1F0-ATP synthase
1 1 1 1 SCOP 82051 Obg GTP-binding protein N-terminal domain
1 1 1 1 SCOP 142019 Nqo1 FMN-binding domain-like
1 1 1 0 SCOP 55261 GAD domain-like
1 1 1 0 SCOP 51269 AFP III-like domain
1 1 1 0 SCOP 110942 HSP90 C-terminal domain
1 1 1 1 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 1 SCOP 46609 Fe,Mn superoxide dismutase (SOD), N-terminal domain
1 1 1 0 SCOP 69742 Glutamyl tRNA-reductase catalytic, N-terminal domain
1 1 1 0 SCOP 75553 Smc hinge domain
1 1 1 0 SCOP 48168 R1 subunit of ribonucleotide reductase, N-terminal domain
1 1 1 0 SCOP 160527 V-type ATPase subunit E-like
1 1 1 1 SCOP 81886 Helical scaffold and wing domains of SecA
1 1 1 0 SCOP 56194 Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
1 1 1 0 SCOP 55277 GYF domain
1 1 1 0 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 64586 C-terminal domain of ProRS
1 1 1 0 SCOP 51064 Head domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 47005 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
1 1 1 0 SCOP 55653 Ribosomal protein L9 C-domain
1 1 1 0 SCOP 75445 D-ribose-5-phosphate isomerase (RpiA), lid domain
1 1 1 0 SCOP 101790 Aminomethyltransferase beta-barrel domain
1 1 1 0 SCOP 143517 TRCF domain-like
1 1 1 1 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 0 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 0 SCOP 46929 DNA helicase RuvA subunit, C-terminal domain
1 1 1 0 SCOP 101821 Aminopeptidase/glucanase lid domain
1 1 1 0 SCOP 54364 Translation initiation factor IF3, N-terminal domain
1 1 1 1 SCOP 69705 Transcription factor NusA, N-terminal domain
1 1 1 0 SCOP 53150 DNA repair protein MutS, domain II
1 1 1 0 SCOP 81767 Pre-protein crosslinking domain of SecA
1 1 1 0 SCOP 81799 Putative methyltransferase TM0872, insert domain
1 1 1 0 SCOP 55869 DNA topoisomerase I domain
1 1 1 0 SCOP 160996 HI0933 insert domain-like
1 1 1 0 SCOP 57770 Methionyl-tRNA synthetase (MetRS), Zn-domain

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The following superfamilies have one or more weak hits:

SCOP superfamily Myosin rod fragments
SCOP superfamily Gametocyte protein Pfg27
SCOP superfamily Apical membrane antigen 1
SCOP superfamily R3H domain
SCOP superfamily SEA domain
SCOP superfamily BRCA2 tower domain
SCOP superfamily Transmembrane di-heme cytochromes
SCOP superfamily Cullin homology domain
SCOP superfamily Plakin repeat
SCOP superfamily Major surface antigen p30, SAG1
SCOP superfamily Cullin repeat-like
SCOP superfamily TolA/TonB C-terminal domain
SCOP superfamily C-terminal domain of PLC-beta
SCOP superfamily Colicin E3 receptor domain
SCOP superfamily OMPT-like
SCOP superfamily Penicillin-binding protein associated domain
SCOP superfamily Integrin domains
SCOP superfamily alpha-ketoacid dehydrogenase kinase, N-terminal domain
SCOP superfamily FAT domain of focal adhesion kinase
SCOP superfamily RPB6/omega subunit-like
SCOP superfamily BAG domain
SCOP superfamily RNA polymerase subunits
SCOP superfamily Apolipoprotein A-I
SCOP superfamily Methyl-accepting chemotaxis protein (MCP) signaling domain
SCOP superfamily Bacterial hemolysins
SCOP superfamily Clostridium neurotoxins, "coiled-coil" domain
SCOP superfamily Multimerization domain of the phosphoprotein from sendai virus
SCOP superfamily Fibrinogen coiled-coil and central regions
SCOP superfamily Cysteine-rich domain
SCOP superfamily Rubredoxin-like
SCOP superfamily beta-beta-alpha zinc fingers
SCOP superfamily TNF receptor-like
SCOP superfamily Mog1p/PsbP-like
SCOP superfamily RuBisCO, small subunit
SCOP superfamily Chalcone isomerase
SCOP superfamily Ubiquitin-like
SCOP superfamily Fe-only hydrogenase
SCOP superfamily Creatinase/prolidase N-terminal domain
SCOP superfamily CRAL/TRIO domain
SCOP superfamily cAMP-binding domain-like
SCOP superfamily Nitrous oxide reductase, N-terminal domain
SCOP superfamily PH domain-like
SCOP superfamily FMN-binding split barrel
SCOP superfamily C-terminal domain of transcriptional repressors
SCOP superfamily EV matrix protein
SCOP superfamily Virus attachment protein globular domain
SCOP superfamily 14-3-3 protein
SCOP superfamily Chondroitin AC/alginate lyase
SCOP superfamily Seven-hairpin glycosidases
SCOP superfamily Uteroglobin-like
SCOP superfamily Regulator of G-protein signaling, RGS
SCOP superfamily Hemocyanin, N-terminal domain
SCOP superfamily DEATH domain
SCOP superfamily Bacteriocin AS-48
SCOP superfamily SAM/Pointed domain
SCOP superfamily Transferrin receptor-like dimerisation domain
SCOP superfamily TMV-like viral coat proteins
SCOP superfamily Apolipoprotein
SCOP superfamily HMG-box
SCOP superfamily Spectrin repeat
SCOP superfamily Epsilon subunit of F1F0-ATP synthase C-terminal domain
SCOP superfamily Prefoldin
SCOP superfamily Gam-like
SCOP superfamily T-antigen specific domain-like
SCOP superfamily Bacterial polysaccharide co-polymerase-like
SCOP superfamily Smr-associated domain-like
SCOP superfamily Sama2622-like
SCOP superfamily RbcX-like
SCOP superfamily GspK insert domain-like
SCOP superfamily DsbB-like
SCOP superfamily Bacillus cereus metalloprotein-like
SCOP superfamily THUMP domain-like
SCOP superfamily FimD N-terminal domain-like
SCOP superfamily PTPA-like
SCOP superfamily Mediator hinge subcomplex-like
SCOP superfamily YozE-like
SCOP superfamily BAS1536-like
SCOP superfamily EsxAB dimer-like
SCOP superfamily MW0975(SA0943)-like
SCOP superfamily YppE-like
SCOP superfamily Phosphoprotein M1, C-terminal domain
SCOP superfamily YbeD/HP0495-like
SCOP superfamily Hypothetical protein PA1324
SCOP superfamily ATP-dependent DNA ligase DNA-binding domain
SCOP superfamily RNA-binding protein She2p
SCOP superfamily Hook domain
SCOP superfamily MIT domain
SCOP superfamily Indigoidine synthase A-like
SCOP superfamily BAR/IMD domain-like
SCOP superfamily SBT domain
SCOP superfamily Roadblock/LC7 domain
SCOP superfamily JAB1/MPN domain
SCOP superfamily Dextranase, N-terminal domain
SCOP superfamily Stathmin
SCOP superfamily Formin homology 2 domain (FH2 domain)
SCOP superfamily Mob1/phocein
SCOP superfamily Heat shock protein 70kD (HSP70), C-terminal subdomain
SCOP superfamily IP3 receptor type 1 binding core, domain 2

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.