| 474 | 459 | 11 | 3 | SCOP 48726 | Immunoglobulin |
| 330 | 328 | 3 | 0 | SCOP 81321 | Family A G protein-coupled receptor-like |
| 266 | 266 | 7 | 5 | SCOP 51735 | NAD(P)-binding Rossmann-fold domains |
| 227 | 227 | 5 | 2 | SCOP 55315 | L30e-like |
| 224 | 224 | 2 | 2 | SCOP 55347 | Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |
| 212 | 150 | 23 | 3 | SCOP 54928 | RNA-binding domain, RBD |
| 196 | 196 | 6 | 1 | SCOP 50104 | Translation proteins SH3-like domain |
| 159 | 142 | 28 | 7 | SCOP 52540 | P-loop containing nucleoside triphosphate hydrolases |
| 154 | 154 | 5 | 2 | SCOP 56112 | Protein kinase-like (PK-like) |
| 148 | 81 | 7 | 1 | SCOP 47095 | HMG-box |
| 134 | 72 | 8 | 2 | SCOP 53067 | Actin-like ATPase domain |
| 122 | 54 | 25 | 1 | SCOP 57667 | beta-beta-alpha zinc fingers |
| 120 | 63 | 4 | 1 | SCOP 56053 | Ribosomal protein L6 |
| 106 | 106 | 16 | 3 | SCOP 54211 | Ribosomal protein S5 domain 2-like |
| 101 | 101 | 2 | 1 | SCOP 54189 | Ribosomal proteins S24e, L23 and L15e |
| 101 | 101 | 7 | 2 | SCOP 50447 | Translation proteins |
| 99 | 99 | 5 | 0 | SCOP 57829 | Zn-binding ribosomal proteins |
| 99 | 86 | 5 | 1 | SCOP 46689 | Homeodomain-like |
| 94 | 94 | 2 | 0 | SCOP 54843 | Ribosomal protein L22 |
| 73 | 73 | 8 | 4 | SCOP 54236 | Ubiquitin-like |
| 73 | 73 | 1 | 0 | SCOP 54575 | Ribosomal protein L31e |
| 67 | 67 | 2 | 2 | SCOP 47113 | Histone-fold |
| 67 | 67 | 4 | 1 | SCOP 54768 | dsRNA-binding domain-like |
| 65 | 65 | 4 | 1 | SCOP 54495 | UBC-like |
| 62 | 62 | 4 | 1 | SCOP 50891 | Cyclophilin-like |
| 61 | 47 | 5 | 1 | SCOP 47473 | EF-hand |
| 60 | 60 | 7 | 1 | SCOP 54695 | POZ domain |
| 55 | 12 | 5 | 0 | SCOP 49313 | Cadherin-like |
| 55 | 53 | 6 | 2 | SCOP 49599 | TRAF domain-like |
| 54 | 54 | 7 | 0 | SCOP 53822 | Periplasmic binding protein-like I |
| 53 | 51 | 6 | 1 | SCOP 48350 | GTPase activation domain, GAP |
| 52 | 49 | 11 | 3 | SCOP 50249 | Nucleic acid-binding proteins |
| 52 | 46 | 3 | 2 | SCOP 54160 | Chromo domain-like |
| 48 | 48 | 2 | 0 | SCOP 48140 | Ribosomal protein L19 (L19e) |
| 45 | 28 | 11 | 1 | SCOP 57716 | Glucocorticoid receptor-like (DNA-binding domain) |
| 43 | 43 | 1 | 0 | SCOP 48366 | Ras GEF |
| 39 | 39 | 2 | 1 | SCOP 52313 | Ribosomal protein S2 |
| 39 | 39 | 5 | 1 | SCOP 100920 | Heat shock protein 70kD (HSP70), peptide-binding domain |
| 38 | 38 | 3 | 1 | SCOP 55307 | Tubulin C-terminal domain-like |
| 37 | 37 | 2 | 0 | SCOP 52080 | Ribosomal proteins L15p and L18e |
| 37 | 37 | 2 | 1 | SCOP 52490 | Tubulin nucleotide-binding domain-like |
| 37 | 36 | 3 | 1 | SCOP 100934 | Heat shock protein 70kD (HSP70), C-terminal subdomain |
| 36 | 35 | 9 | 5 | SCOP 46785 | "Winged helix" DNA-binding domain |
| 35 | 35 | 2 | 1 | SCOP 50182 | Sm-like ribonucleoproteins |
| 34 | 30 | 6 | 3 | SCOP 52833 | Thioredoxin-like |
| 33 | 33 | 2 | 2 | SCOP 46626 | Cytochrome c |
| 32 | 31 | 8 | 1 | SCOP 50978 | WD40 repeat-like |
| 30 | 30 | 1 | 0 | SCOP 48662 | Ribosomal protein L39e |
| 30 | 30 | 6 | 0 | SCOP 48592 | GroEL equatorial domain-like |
| 29 | 27 | 15 | 1 | SCOP 57850 | RING/U-box |
| 29 | 29 | 8 | 0 | SCOP 110942 | HSP90 C-terminal domain |
| 28 | 28 | 5 | 2 | SCOP 52029 | GroEL apical domain-like |
| 28 | 27 | 4 | 0 | SCOP 54849 | GroEL-intermediate domain like |
| 26 | 26 | 1 | 1 | SCOP 103506 | Mitochondrial carrier |
| 26 | 17 | 4 | 2 | SCOP 55753 | Actin depolymerizing proteins |
| 26 | 26 | 2 | 1 | SCOP 50494 | Trypsin-like serine proteases |
| 26 | 26 | 6 | 1 | SCOP 55874 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |
| 25 | 22 | 5 | 1 | SCOP 48452 | TPR-like |
| 25 | 25 | 1 | 0 | SCOP 52042 | Ribosomal protein L32e |
| 25 | 25 | 2 | 0 | SCOP 144091 | Rhomboid-like |
| 24 | 24 | 1 | 1 | SCOP 47240 | Ferritin-like |
| 24 | 23 | 6 | 5 | SCOP 54001 | Cysteine proteinases |
| 22 | 22 | 5 | 1 | SCOP 51419 | PLP-binding barrel |
| 21 | 21 | 1 | 1 | SCOP 56047 | Ribosomal protein S8 |
| 20 | 20 | 6 | 2 | SCOP 53335 | S-adenosyl-L-methionine-dependent methyltransferases |
| 20 | 20 | 6 | 3 | SCOP 48371 | ARM repeat |
| 19 | 19 | 3 | 4 | SCOP 53474 | alpha/beta-Hydrolases |
| 19 | 19 | 5 | 1 | SCOP 53137 | Translational machinery components |
| 19 | 19 | 1 | 1 | SCOP 56235 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) |
| 18 | 18 | 2 | 1 | SCOP 52768 | Arginase/deacetylase |
| 18 | 18 | 3 | 1 | SCOP 47616 | GST C-terminal domain-like |
| 17 | 17 | 2 | 1 | SCOP 56300 | Metallo-dependent phosphatases |
| 17 | 17 | 2 | 0 | SCOP 47060 | S15/NS1 RNA-binding domain |
| 17 | 17 | 1 | 0 | SCOP 116820 | Rps17e-like |
| 16 | 16 | 1 | 0 | SCOP 56808 | Ribosomal protein L1 |
| 16 | 13 | 7 | 2 | SCOP 49899 | Concanavalin A-like lectins/glucanases |
| 15 | 15 | 3 | 1 | SCOP 54452 | MHC antigen-recognition domain |
| 14 | 14 | 2 | 1 | SCOP 54686 | Ribosomal protein L16p/L10e |
| 14 | 14 | 1 | 1 | SCOP 50193 | Ribosomal protein L14 |
| 14 | 14 | 1 | 1 | SCOP 54919 | Nucleoside diphosphate kinase, NDK |
| 14 | 14 | 3 | 1 | SCOP 50465 | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain |
| 14 | 14 | 1 | 1 | SCOP 48445 | 14-3-3 protein |
| 13 | 13 | 2 | 0 | SCOP 46946 | S13-like H2TH domain |
| 13 | 13 | 2 | 0 | SCOP 55174 | Alpha-L RNA-binding motif |
| 13 | 13 | 1 | 0 | SCOP 53756 | UDP-Glycosyltransferase/glycogen phosphorylase |
| 13 | 13 | 1 | 1 | SCOP 53254 | Phosphoglycerate mutase-like |
| 13 | 13 | 2 | 0 | SCOP 46561 | Ribosomal protein L29 (L29p) |
| 13 | 12 | 2 | 1 | SCOP 55729 | Acyl-CoA N-acyltransferases (Nat) |
| 13 | 13 | 4 | 0 | SCOP 48403 | Ankyrin repeat |
| 13 | 13 | 1 | 1 | SCOP 55159 | eIF1-like |
| 13 | 13 | 2 | 1 | SCOP 52283 | Formate/glycerate dehydrogenase catalytic domain-like |
| 13 | 13 | 2 | 1 | SCOP 48264 | Cytochrome P450 |
| 13 | 13 | 4 | 1 | SCOP 46565 | Chaperone J-domain |
| 13 | 13 | 3 | 1 | SCOP 50621 | Alanine racemase C-terminal domain-like |
| 13 | 4 | 4 | 1 | SCOP 56487 | SRCR-like |
| 13 | 13 | 3 | 1 | SCOP 54747 | Ribosomal L11/L12e N-terminal domain |
| 12 | 12 | 2 | 1 | SCOP 50129 | GroES-like |
| 12 | 12 | 2 | 0 | SCOP 55129 | Ribosomal protein L30p/L7e |
| 12 | 12 | 1 | 1 | SCOP 55331 | Tautomerase/MIF |
| 12 | 12 | 3 | 1 | SCOP 56436 | C-type lectin-like |
| 12 | 12 | 3 | 0 | SCOP 117892 | Band 7/SPFH domain |
| 12 | 12 | 1 | 1 | SCOP 69203 | Nucleoplasmin-like core domain |
| 12 | 6 | 6 | 0 | SCOP 64593 | Intermediate filament protein, coiled coil region |
| 12 | 6 | 3 | 0 | SCOP 49493 | HSP40/DnaJ peptide-binding domain |
| 11 | 11 | 4 | 4 | SCOP 56784 | HAD-like |
| 11 | 11 | 1 | 2 | SCOP 51316 | Mss4-like |
| 11 | 11 | 1 | 1 | SCOP 143113 | NAP-like |
| 11 | 11 | 2 | 1 | SCOP 54403 | Cystatin/monellin |
| 10 | 10 | 1 | 1 | SCOP 55282 | RL5-like |
| 10 | 10 | 1 | 1 | SCOP 51430 | NAD(P)-linked oxidoreductase |
| 10 | 7 | 7 | 1 | SCOP 50044 | SH3-domain |
| 10 | 10 | 2 | 0 | SCOP 160374 | RplX-like |
| 10 | 10 | 2 | 1 | SCOP 56327 | LDH C-terminal domain-like |
| 10 | 10 | 1 | 1 | SCOP 55637 | Cell cycle regulatory proteins |
| 9 | 6 | 5 | 2 | SCOP 51905 | FAD/NAD(P)-binding domain |
| 9 | 9 | 2 | 0 | SCOP 54570 | Ribosomal protein S19 |
| 9 | 9 | 1 | 1 | SCOP 53748 | Phosphoglycerate kinase |
| 9 | 9 | 2 | 1 | SCOP 51197 | Clavaminate synthase-like |
| 9 | 9 | 1 | 1 | SCOP 55418 | eIF4e-like |
| 9 | 8 | 5 | 1 | SCOP 52058 | L domain-like |
| 9 | 8 | 2 | 1 | SCOP 53901 | Thiolase-like |
| 9 | 5 | 2 | 1 | SCOP 54980 | EF-G C-terminal domain-like |
| 8 | 8 | 2 | 0 | SCOP 81333 | F1F0 ATP synthase subunit C |
| 8 | 8 | 3 | 1 | SCOP 49764 | HSP20-like chaperones |
| 8 | 8 | 3 | 0 | SCOP 56104 | SAICAR synthase-like |
| 8 | 8 | 3 | 2 | SCOP 64356 | SNARE-like |
| 8 | 8 | 1 | 1 | SCOP 52799 | (Phosphotyrosine protein) phosphatases II |
| 8 | 8 | 4 | 1 | SCOP 54427 | NTF2-like |
| 8 | 3 | 3 | 0 | SCOP 57196 | EGF/Laminin |
| 7 | 7 | 2 | 2 | SCOP 53383 | PLP-dependent transferases |
| 7 | 7 | 2 | 1 | SCOP 51621 | Phosphoenolpyruvate/pyruvate domain |
| 7 | 7 | 1 | 0 | SCOP 55811 | Nudix |
| 7 | 7 | 1 | 0 | SCOP 63393 | RNA polymerase subunits |
| 7 | 7 | 1 | 1 | SCOP 49777 | PEBP-like |
| 7 | 7 | 2 | 0 | SCOP 52255 | N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) |
| 7 | 7 | 2 | 1 | SCOP 51604 | Enolase C-terminal domain-like |
| 7 | 7 | 4 | 2 | SCOP 50729 | PH domain-like |
| 7 | 7 | 2 | 0 | SCOP 46906 | Ribosomal protein L11, C-terminal domain |
| 7 | 7 | 3 | 0 | SCOP 54821 | Ribosomal protein S3 C-terminal domain |
| 7 | 7 | 2 | 1 | SCOP 52935 | PK C-terminal domain-like |
| 7 | 2 | 2 | 1 | SCOP 49265 | Fibronectin type III |
| 7 | 7 | 2 | 1 | SCOP 54826 | Enolase N-terminal domain-like |
| 7 | 7 | 3 | 0 | SCOP 47353 | Retrovirus capsid dimerization domain-like |
| 7 | 3 | 3 | 0 | SCOP 57535 | Complement control module/SCR domain |
| 7 | 7 | 2 | 1 | SCOP 47216 | Proteasome activator |
| 6 | 6 | 2 | 1 | SCOP 52166 | Ribosomal protein L4 |
| 6 | 6 | 5 | 2 | SCOP 55486 | Metalloproteases ("zincins"), catalytic domain |
| 6 | 6 | 1 | 0 | SCOP 46579 | Prefoldin |
| 6 | 5 | 3 | 1 | SCOP 51230 | Single hybrid motif |
| 6 | 6 | 1 | 1 | SCOP 50800 | PK beta-barrel domain-like |
| 6 | 6 | 2 | 1 | SCOP 54814 | Prokaryotic type KH domain (KH-domain type II) |
| 6 | 5 | 3 | 1 | SCOP 117281 | Kelch motif |
| 6 | 6 | 1 | 0 | SCOP 48670 | Transducin (heterotrimeric G protein), gamma chain |
| 5 | 5 | 3 | 1 | SCOP 53448 | Nucleotide-diphospho-sugar transferases |
| 5 | 5 | 1 | 0 | SCOP 160369 | Ribosomal protein L10-like |
| 5 | 5 | 1 | 1 | SCOP 82657 | BolA-like |
| 5 | 5 | 3 | 1 | SCOP 54534 | FKBP-like |
| 5 | 5 | 1 | 1 | SCOP 81524 | 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
| 5 | 5 | 1 | 1 | SCOP 69103 | Arp2/3 complex 16 kDa subunit ARPC5 |
| 5 | 5 | 2 | 1 | SCOP 57997 | Tropomyosin |
| 5 | 5 | 4 | 2 | SCOP 49879 | SMAD/FHA domain |
| 5 | 5 | 1 | 1 | SCOP 50814 | Lipocalins |
| 5 | 5 | 2 | 0 | SCOP 57938 | DnaJ/Hsp40 cysteine-rich domain |
| 5 | 1 | 1 | 1 | SCOP 90257 | Myosin rod fragments |
| 5 | 3 | 3 | 1 | SCOP 54791 | Eukaryotic type KH-domain (KH-domain type I) |
| 5 | 5 | 2 | 0 | SCOP 90209 | Ran binding protein zinc finger-like |
| 5 | 4 | 4 | 0 | SCOP 46934 | UBA-like |
| 5 | 5 | 5 | 1 | SCOP 55550 | SH2 domain |
| 5 | 4 | 4 | 1 | SCOP 74924 | Cap-Gly domain |
| 5 | 5 | 3 | 1 | SCOP 49417 | p53-like transcription factors |
| 5 | 5 | 2 | 1 | SCOP 47874 | Annexin |
| 4 | 4 | 2 | 1 | SCOP 53271 | PRTase-like |
| 4 | 4 | 3 | 1 | SCOP 53927 | Cytidine deaminase-like |
| 4 | 4 | 2 | 1 | SCOP 52141 | Uracil-DNA glycosylase-like |
| 4 | 4 | 4 | 1 | SCOP 53098 | Ribonuclease H-like |
| 4 | 4 | 3 | 1 | SCOP 55681 | Class II aaRS and biotin synthetases |
| 4 | 4 | 1 | 0 | SCOP 144122 | Tim10-like |
| 4 | 4 | 1 | 1 | SCOP 81406 | Mitochondrial cytochrome c oxidase subunit IV |
| 4 | 4 | 1 | 1 | SCOP 52788 | Phosphotyrosine protein phosphatases I |
| 4 | 4 | 1 | 0 | SCOP 55724 | Mog1p/PsbP-like |
| 4 | 4 | 3 | 0 | SCOP 47413 | lambda repressor-like DNA-binding domains |
| 4 | 2 | 1 | 1 | SCOP 63411 | LuxS/MPP-like metallohydrolase |
| 4 | 4 | 2 | 0 | SCOP 82199 | SET domain |
| 4 | 4 | 1 | 1 | SCOP 56574 | Serpins |
| 4 | 3 | 3 | 1 | SCOP 57903 | FYVE/PHD zinc finger |
| 4 | 4 | 4 | 0 | SCOP 81665 | Calcium ATPase, transmembrane domain M |
| 4 | 4 | 4 | 0 | SCOP 100966 | Translation initiation factor 2 beta, aIF2beta, N-terminal domain |
| 4 | 4 | 3 | 1 | SCOP 47459 | HLH, helix-loop-helix DNA-binding domain |
| 4 | 4 | 1 | 0 | SCOP 52113 | BRCT domain |
| 4 | 4 | 2 | 1 | SCOP 47266 | 4-helical cytokines |
| 4 | 4 | 3 | 1 | SCOP 50615 | N-terminal domain of alpha and beta subunits of F1 ATP synthase |
| 4 | 4 | 3 | 1 | SCOP 74788 | Cullin repeat-like |
| 4 | 4 | 3 | 1 | SCOP 48508 | Nuclear receptor ligand-binding domain |
| 4 | 4 | 1 | 0 | SCOP 81423 | Mitochondrial cytochrome c oxidase subunit VIIb |
| 4 | 4 | 1 | 1 | SCOP 143875 | ERH-like |
| 4 | 4 | 3 | 0 | SCOP 57552 | Blood coagulation inhibitor (disintegrin) |
| 4 | 3 | 3 | 0 | SCOP 51045 | WW domain |
| 4 | 4 | 1 | 1 | SCOP 81382 | Skp1 dimerisation domain-like |
| 3 | 3 | 1 | 1 | SCOP 51569 | Aldolase |
| 3 | 3 | 2 | 0 | SCOP 46911 | Ribosomal protein S18 |
| 3 | 3 | 1 | 1 | SCOP 54197 | HIT-like |
| 3 | 3 | 2 | 0 | SCOP 103473 | MFS general substrate transporter |
| 3 | 3 | 1 | 1 | SCOP 48557 | L-aspartase-like |
| 3 | 2 | 2 | 1 | SCOP 51412 | Inosine monophosphate dehydrogenase (IMPDH) |
| 3 | 3 | 2 | 1 | SCOP 81296 | E set domains |
| 3 | 3 | 1 | 0 | SCOP 88723 | PIN domain-like |
| 3 | 3 | 1 | 0 | SCOP 54648 | DLC |
| 3 | 2 | 2 | 1 | SCOP 69645 | Arp2/3 complex subunits |
| 3 | 3 | 1 | 1 | SCOP 46924 | RNA polymerase subunit RPB10 |
| 3 | 3 | 3 | 0 | SCOP 64268 | PX domain |
| 3 | 3 | 2 | 1 | SCOP 47576 | Calponin-homology domain, CH-domain |
| 3 | 3 | 1 | 1 | SCOP 110857 | Gamma-glutamyl cyclotransferase-like |
| 3 | 2 | 2 | 1 | SCOP 56762 | HydB/Nqo4-like |
| 3 | 3 | 2 | 1 | SCOP 56219 | DNase I-like |
| 3 | 3 | 2 | 0 | SCOP 88697 | PUA domain-like |
| 3 | 3 | 1 | 1 | SCOP 101386 | all-alpha NTP pyrophosphatases |
| 3 | 3 | 1 | 1 | SCOP 69695 | SRP19 |
| 3 | 3 | 1 | 0 | SCOP 48019 | post-AAA+ oligomerization domain-like |
| 3 | 3 | 2 | 1 | SCOP 110111 | Ctag/Cox11 |
| 3 | 3 | 2 | 1 | SCOP 81383 | F-box domain |
| 3 | 3 | 1 | 0 | SCOP 56496 | Fibrinogen C-terminal domain-like |
| 3 | 3 | 3 | 1 | SCOP 54373 | FAD-linked reductases, C-terminal domain |
| 3 | 3 | 3 | 1 | SCOP 63748 | Tudor/PWWP/MBT |
| 3 | 3 | 1 | 1 | SCOP 116742 | eIF2alpha middle domain-like |
| 3 | 3 | 2 | 0 | SCOP 57302 | Snake toxin-like |
| 3 | 3 | 1 | 0 | SCOP 47396 | Transcription factor IIA (TFIIA), alpha-helical domain |
| 3 | 2 | 2 | 1 | SCOP 111347 | Rap/Ran-GAP |
| 3 | 3 | 2 | 2 | SCOP 158573 | GINS helical bundle-like |
| 3 | 3 | 3 | 0 | SCOP 47986 | DEATH domain |
| 3 | 3 | 1 | 1 | SCOP 55481 | N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 |
| 3 | 3 | 1 | 1 | SCOP 161065 | ATP synthase D chain-like |
| 3 | 3 | 1 | 1 | SCOP 110993 | eIF-2-alpha, C-terminal domain |
| 3 | 3 | 2 | 1 | SCOP 47917 | C-terminal domain of alpha and beta subunits of F1 ATP synthase |
| 3 | 3 | 1 | 1 | SCOP 50784 | Transcription factor IIA (TFIIA), beta-barrel domain |
| 3 | 3 | 2 | 1 | SCOP 47157 | Mitochondrial import receptor subunit Tom20 |
| 3 | 1 | 1 | 1 | SCOP 75399 | Plakin repeat |
| 2 | 2 | 1 | 1 | SCOP 53167 | Purine and uridine phosphorylases |
| 2 | 2 | 1 | 2 | SCOP 53613 | Ribokinase-like |
| 2 | 2 | 1 | 0 | SCOP 47973 | Ribosomal protein S7 |
| 2 | 2 | 2 | 0 | SCOP 52374 | Nucleotidylyl transferase |
| 2 | 2 | 2 | 1 | SCOP 55920 | Creatinase/aminopeptidase |
| 2 | 1 | 1 | 0 | SCOP 56214 | 4'-phosphopantetheinyl transferase |
| 2 | 1 | 1 | 0 | SCOP 52518 | Thiamin diphosphate-binding fold (THDP-binding) |
| 2 | 2 | 1 | 1 | SCOP 53659 | Isocitrate/Isopropylmalate dehydrogenase-like |
| 2 | 2 | 1 | 0 | SCOP 89360 | HesB-like domain |
| 2 | 2 | 1 | 1 | SCOP 52096 | ClpP/crotonase |
| 2 | 2 | 1 | 1 | SCOP 48576 | Terpenoid synthases |
| 2 | 1 | 1 | 0 | SCOP 58038 | SNARE fusion complex |
| 2 | 2 | 1 | 1 | SCOP 109604 | HD-domain/PDEase-like |
| 2 | 2 | 2 | 1 | SCOP 48256 | Citrate synthase |
| 2 | 1 | 1 | 1 | SCOP 53649 | Alkaline phosphatase-like |
| 2 | 2 | 2 | 1 | SCOP 48239 | Terpenoid cyclases/Protein prenyltransferases |
| 2 | 2 | 1 | 0 | SCOP 81411 | Mitochondrial cytochrome c oxidase subunit VIa |
| 2 | 2 | 1 | 0 | SCOP 144210 | Nop10-like SnoRNP |
| 2 | 2 | 2 | 1 | SCOP 51182 | RmlC-like cupins |
| 2 | 2 | 2 | 1 | SCOP 48439 | Protein prenylyltransferase |
| 2 | 2 | 1 | 0 | SCOP 81508 | Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
| 2 | 2 | 1 | 1 | SCOP 161219 | CHY zinc finger-like |
| 2 | 2 | 2 | 1 | SCOP 48113 | Heme-dependent peroxidases |
| 2 | 2 | 2 | 1 | SCOP 52047 | RNI-like |
| 2 | 2 | 1 | 0 | SCOP 55257 | RBP11-like subunits of RNA polymerase |
| 2 | 2 | 2 | 1 | SCOP 55961 | Bet v1-like |
| 2 | 2 | 1 | 1 | SCOP 52266 | SGNH hydrolase |
| 2 | 2 | 1 | 1 | SCOP 46458 | Globin-like |
| 2 | 2 | 1 | 1 | SCOP 54593 | Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase |
| 2 | 2 | 2 | 1 | SCOP 81301 | Nucleotidyltransferase |
| 2 | 2 | 1 | 1 | SCOP 50242 | TIMP-like |
| 2 | 2 | 2 | 1 | SCOP 57802 | Rubredoxin-like |
| 2 | 2 | 2 | 1 | SCOP 69864 | Argininosuccinate synthetase, C-terminal domain |
| 2 | 2 | 2 | 0 | SCOP 50156 | PDZ domain-like |
| 2 | 2 | 1 | 0 | SCOP 47162 | Apolipoprotein |
| 2 | 2 | 2 | 0 | SCOP 49354 | PapD-like |
| 2 | 2 | 2 | 1 | SCOP 81631 | PAP/OAS1 substrate-binding domain |
| 2 | 1 | 1 | 0 | SCOP 47954 | Cyclin-like |
| 2 | 2 | 2 | 0 | SCOP 75689 | Zinc-binding domain of translation initiation factor 2 beta |
| 2 | 2 | 2 | 0 | SCOP 101576 | Supernatant protein factor (SPF), C-terminal domain |
| 2 | 2 | 2 | 1 | SCOP 56854 | Bcl-2 inhibitors of programmed cell death |
| 2 | 2 | 2 | 0 | SCOP 90229 | CCCH zinc finger |
| 2 | 2 | 1 | 1 | SCOP 69000 | FAD-dependent thiol oxidase |
| 2 | 2 | 2 | 1 | SCOP 47895 | Transducin (alpha subunit), insertion domain |
| 2 | 2 | 2 | 1 | SCOP 101690 | PAZ domain |
| 2 | 2 | 2 | 0 | SCOP 82754 | C-terminal, gelsolin-like domain of Sec23/24 |
| 2 | 2 | 2 | 1 | SCOP 75632 | Cullin homology domain |
| 2 | 2 | 2 | 1 | SCOP 102848 | NSFL1 (p97 ATPase) cofactor p47, SEP domain |
| 2 | 2 | 1 | 1 | SCOP 63501 | Frizzled cysteine-rich domain |
| 2 | 2 | 1 | 1 | SCOP 161245 | Zinc hairpin stack |
| 1 | 1 | 1 | 1 | SCOP 51366 | Ribulose-phoshate binding barrel |
| 1 | 1 | 1 | 0 | SCOP 54999 | Ribosomal protein S10 |
| 1 | 1 | 1 | 0 | SCOP 57840 | Ribosomal protein L36 |
| 1 | 1 | 1 | 0 | SCOP 55120 | Pseudouridine synthase |
| 1 | 1 | 1 | 0 | SCOP 103657 | BAR/IMD domain-like |
| 1 | 1 | 1 | 0 | SCOP 52218 | Flavoproteins |
| 1 | 1 | 1 | 0 | SCOP 50324 | Inorganic pyrophosphatase |
| 1 | 1 | 1 | 1 | SCOP 52402 | Adenine nucleotide alpha hydrolases-like |
| 1 | 1 | 1 | 1 | SCOP 55194 | Ribosome recycling factor, RRF |
| 1 | 1 | 1 | 1 | SCOP 64484 | beta and beta-prime subunits of DNA dependent RNA-polymerase |
| 1 | 1 | 1 | 1 | SCOP 53720 | ALDH-like |
| 1 | 1 | 1 | 0 | SCOP 54862 | 4Fe-4S ferredoxins |
| 1 | 1 | 1 | 0 | SCOP 51713 | tRNA-guanine transglycosylase |
| 1 | 1 | 1 | 1 | SCOP 56276 | S-adenosylmethionine decarboxylase |
| 1 | 1 | 1 | 1 | SCOP 56281 | Metallo-hydrolase/oxidoreductase |
| 1 | 1 | 1 | 0 | SCOP 102114 | Radical SAM enzymes |
| 1 | 1 | 1 | 0 | SCOP 101908 | Putative isomerase YbhE |
| 1 | 1 | 1 | 0 | SCOP 51395 | FMN-linked oxidoreductases |
| 1 | 1 | 1 | 0 | SCOP 69500 | DTD-like |
| 1 | 1 | 1 | 1 | SCOP 56815 | Sec1/munc18-like (SM) proteins |
| 1 | 1 | 1 | 1 | SCOP 47027 | Acyl-CoA binding protein |
| 1 | 1 | 1 | 0 | SCOP 81514 | Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
| 1 | 1 | 1 | 0 | SCOP 55248 | PCD-like |
| 1 | 1 | 1 | 1 | SCOP 69572 | Activating enzymes of the ubiquitin-like proteins |
| 1 | 1 | 1 | 1 | SCOP 54506 | Diaminopimelate epimerase-like |
| 1 | 1 | 1 | 0 | SCOP 89895 | FYSH domain |
| 1 | 1 | 1 | 0 | SCOP 51306 | LexA/Signal peptidase |
| 1 | 1 | 1 | 0 | SCOP 53639 | AraD/HMP-PK domain-like |
| 1 | 1 | 1 | 0 | SCOP 111126 | Ligand-binding domain in the NO signalling and Golgi transport |
| 1 | 1 | 1 | 0 | SCOP 81343 | Fumarate reductase respiratory complex transmembrane subunits |
| 1 | 1 | 1 | 1 | SCOP 55856 | Cytochrome b5-like heme/steroid binding domain |
| 1 | 1 | 1 | 1 | SCOP 55770 | Profilin (actin-binding protein) |
| 1 | 1 | 1 | 1 | SCOP 101546 | ASF1-like |
| 1 | 1 | 1 | 0 | SCOP 52954 | Class II aaRS ABD-related |
| 1 | 1 | 1 | 1 | SCOP 54631 | CBS-domain pair |
| 1 | 1 | 1 | 0 | SCOP 55073 | Nucleotide cyclase |
| 1 | 1 | 1 | 1 | SCOP 56601 | beta-lactamase/transpeptidase-like |
| 1 | 1 | 1 | 0 | SCOP 46955 | Putative DNA-binding domain |
| 1 | 1 | 1 | 0 | SCOP 57783 | Zinc beta-ribbon |
| 1 | 1 | 1 | 1 | SCOP 55797 | PR-1-like |
| 1 | 1 | 1 | 0 | SCOP 53300 | vWA-like |
| 1 | 1 | 1 | 0 | SCOP 161111 | Cation efflux protein transmembrane domain-like |
| 1 | 1 | 1 | 0 | SCOP 141000 | Glu-tRNAGln amidotransferase C subunit |
| 1 | 1 | 1 | 1 | SCOP 103365 | Hypothetical protein PH1602 |
| 1 | 1 | 1 | 0 | SCOP 54518 | Tubby C-terminal domain-like |
| 1 | 1 | 1 | 0 | SCOP 50952 | Soluble quinoprotein glucose dehydrogenase |
| 1 | 1 | 1 | 0 | SCOP 82153 | FAS1 domain |
| 1 | 1 | 1 | 1 | SCOP 160909 | ATP12-like |
| 1 | 1 | 1 | 0 | SCOP 110069 | ApaG-like |
| 1 | 1 | 1 | 1 | SCOP 52335 | Methylglyoxal synthase-like |
| 1 | 1 | 1 | 1 | SCOP 103196 | Roadblock/LC7 domain |
| 1 | 1 | 1 | 0 | SCOP 64076 | MTH938-like |
| 1 | 1 | 1 | 0 | SCOP 52309 | N-(deoxy)ribosyltransferase-like |
| 1 | 1 | 1 | 0 | SCOP 56024 | Phospholipase D/nuclease |
| 1 | 1 | 1 | 0 | SCOP 47781 | RuvA domain 2-like |
| 1 | 1 | 1 | 0 | SCOP 82171 | DPP6 N-terminal domain-like |
| 1 | 1 | 1 | 0 | SCOP 160350 | Rnp2-like |
| 1 | 1 | 1 | 0 | SCOP 54984 | eEF-1beta-like |
| 1 | 1 | 1 | 0 | SCOP 55287 | RPB5-like RNA polymerase subunit |
| 1 | 1 | 1 | 1 | SCOP 102462 | Peptidyl-tRNA hydrolase II |
| 1 | 1 | 1 | 1 | SCOP 52777 | CoA-dependent acyltransferases |
| 1 | 1 | 1 | 1 | SCOP 55424 | FAD/NAD-linked reductases, dimerisation (C-terminal) domain |
| 1 | 1 | 1 | 1 | SCOP 52343 | Ferredoxin reductase-like, C-terminal NADP-linked domain |
| 1 | 1 | 1 | 0 | SCOP 158832 | Tex N-terminal region-like |
| 1 | 1 | 1 | 1 | SCOP 56512 | Nitric oxide (NO) synthase oxygenase domain |
| 1 | 1 | 1 | 0 | SCOP 50370 | Ricin B-like lectins |
| 1 | 1 | 1 | 1 | SCOP 48619 | Phospholipase A2, PLA2 |
| 1 | 1 | 1 | 1 | SCOP 53223 | Aminoacid dehydrogenase-like, N-terminal domain |
| 1 | 1 | 1 | 0 | SCOP 52922 | TK C-terminal domain-like |
| 1 | 1 | 1 | 0 | SCOP 81995 | beta-sandwich domain of Sec23/24 |
| 1 | 1 | 1 | 1 | SCOP 51344 | Epsilon subunit of F1F0-ATP synthase N-terminal domain |
| 1 | 1 | 1 | 1 | SCOP 52129 | Caspase-like |
| 1 | 1 | 1 | 0 | SCOP 158745 | LanC-like |
| 1 | 1 | 1 | 1 | SCOP 160059 | PriA/YqbF domain |
| 1 | 1 | 1 | 0 | SCOP 161093 | MgtE membrane domain-like |
| 1 | 1 | 1 | 0 | SCOP 54171 | DNA-binding domain |
| 1 | 1 | 1 | 0 | SCOP 52075 | Outer arm dynein light chain 1 |
| 1 | 1 | 1 | 1 | SCOP 55060 | GHMP Kinase, C-terminal domain |
| 1 | 1 | 1 | 0 | SCOP 68906 | SAP domain |
| 1 | 1 | 1 | 0 | SCOP 57863 | ArfGap/RecO-like zinc finger |
| 1 | 1 | 1 | 1 | SCOP 63380 | Riboflavin synthase domain-like |
| 1 | 1 | 1 | 0 | SCOP 46604 | Epsilon subunit of F1F0-ATP synthase C-terminal domain |
| 1 | 1 | 1 | 1 | SCOP 117289 | Nucleoporin domain |
| 1 | 1 | 1 | 0 | SCOP 81837 | BEACH domain |
| 1 | 1 | 1 | 1 | SCOP 82708 | R3H domain |
| 1 | 1 | 1 | 0 | SCOP 57184 | Growth factor receptor domain |
| 1 | 1 | 1 | 0 | SCOP 47928 | N-terminal domain of the delta subunit of the F1F0-ATP synthase |
| 1 | 1 | 1 | 0 | SCOP 57845 | B-box zinc-binding domain |
| 1 | 1 | 1 | 1 | SCOP 160696 | BTG domain-like |
| 1 | 1 | 1 | 1 | SCOP 111357 | Mitochondrial ATP synthase coupling factor 6 |
| 1 | 1 | 1 | 0 | SCOP 49854 | Spermadhesin, CUB domain |
| 1 | 1 | 1 | 1 | SCOP 101152 | Mob1/phocein |
| 1 | 1 | 1 | 1 | SCOP 56366 | SMAD MH1 domain |
| 1 | 1 | 1 | 0 | SCOP 81518 | Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
| 1 | 1 | 1 | 0 | SCOP 54277 | CAD & PB1 domains |
| 1 | 1 | 1 | 0 | SCOP 47923 | Ypt/Rab-GAP domain of gyp1p |
| 1 | 1 | 1 | 0 | SCOP 47370 | Bromodomain |
| 1 | 1 | 1 | 0 | SCOP 118359 | Expressed protein At2g23090/F21P24.15 |
| 1 | 1 | 1 | 0 | SCOP 100895 | Kazal-type serine protease inhibitors |
| 1 | 1 | 1 | 0 | SCOP 47676 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| 1 | 1 | 1 | 0 | SCOP 63570 | PABC (PABP) domain |
| 1 | 1 | 1 | 0 | SCOP 57256 | Elafin-like |
| 1 | 1 | 1 | 0 | SCOP 47769 | SAM/Pointed domain |
| 1 | 1 | 1 | 0 | SCOP 82671 | SEA domain |
| 1 | 1 | 1 | 1 | SCOP 48464 | ENTH/VHS domain |
| 1 | 1 | 1 | 1 | SCOP 57924 | Inhibitor of apoptosis (IAP) repeat |
| 1 | 1 | 1 | 1 | SCOP 48097 | Regulator of G-protein signaling, RGS |
| 1 | 1 | 1 | 1 | SCOP 49447 | Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor |
| 1 | 1 | 1 | 0 | SCOP 50084 | Myosin S1 fragment, N-terminal domain |
| 1 | 1 | 1 | 0 | SCOP 52025 | PA domain |
| 1 | 1 | 1 | 0 | SCOP 101288 | L27 domain |
| 1 | 1 | 1 | 1 | SCOP 48340 | Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain |
| 1 | 1 | 1 | 1 | SCOP 54076 | RNase A-like |
| 1 | 1 | 1 | 0 | SCOP 57756 | Retrovirus zinc finger-like domains |
| 1 | 1 | 1 | 1 | SCOP 103107 | Hypothetical protein c14orf129, hspc210 |
| 1 | 1 | 1 | 0 | SCOP 64602 | F1 ATPase inhibitor, IF1, C-terminal domain |
| 1 | 1 | 1 | 1 | SCOP 57959 | Leucine zipper domain |
| 1 | 1 | 1 | 1 | SCOP 50911 | Mannose 6-phosphate receptor domain |
| 1 | 1 | 1 | 0 | SCOP 47050 | VHP, Villin headpiece domain |
| 1 | 1 | 1 | 1 | SCOP 54529 | Mitochondrial glycoprotein MAM33-like |
| 1 | 1 | 1 | 0 | SCOP 160527 | V-type ATPase subunit E-like |
| 1 | 1 | 1 | 0 | SCOP 53036 | Eukaryotic RPB5 N-terminal domain |
| 1 | 1 | 1 | 0 | SCOP 109715 | DEK C-terminal domain |
| 1 | 1 | 1 | 0 | SCOP 81822 | RuBisCo LSMT C-terminal, substrate-binding domain |
| 1 | 1 | 1 | 1 | SCOP 50916 | Rap30/74 interaction domains |
| 1 | 1 | 1 | 1 | SCOP 109775 | Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain |
| 1 | 1 | 1 | 0 | SCOP 46942 | Elongation factor TFIIS domain 2 |
| 1 | 1 | 1 | 0 | SCOP 48678 | Moesin tail domain |
| 1 | 1 | 1 | 0 | SCOP 47031 | Second domain of FERM |
| 1 | 1 | 1 | 0 | SCOP 69848 | LCCL domain |
| 1 | 1 | 1 | 1 | SCOP 55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain |
| 1 | 1 | 1 | 1 | SCOP 140612 | EB1 dimerisation domain-like |
| 1 | 1 | 1 | 0 | SCOP 160897 | Taf5 N-terminal domain-like |
| 1 | 1 | 1 | 1 | SCOP 56491 | A heparin-binding domain |
| 1 | 1 | 1 | 0 | SCOP 47005 | Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex |
| 1 | 1 | 1 | 0 | SCOP 81811 | Helical domain of Sec23/24 |
| 1 | 1 | 1 | 0 | SCOP 82919 | Zn-finger domain of Sec23/24 |
| 1 | 1 | 1 | 1 | SCOP 49594 | Rab geranylgeranyltransferase alpha-subunit, insert domain |
| 1 | 1 | 1 | 1 | SCOP 160088 | NRDP1 C-terminal domain-like |
| 1 | 1 | 1 | 0 | SCOP 109728 | Hypothetical protein AF0491, middle domain |
| 1 | 1 | 1 | 1 | SCOP 111469 | Geminin coiled-coil domain |
