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  Home > Genomes > Superfamily assignments for Brugia malayi WS250


Brugia malayi WS250 superfamily assignments

Taxonomy
Taxonomy browser entry

Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Nematoda; Chromadorea; Spirurida; Filarioidea; Onchocercidae; Brugia; Brugia malayi

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Fasta format sequences
Domain assignments

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Assignment statistics

Sequences: 17153 total
8738 (51 %) with assignment
381 average length
39 % amino acid coverage
Domains: 15321 total
902 unique superfamilies
703 unique families
290 average length
17 average superfamily size
94 % formed by duplication
Domain combinations: 892 domain pairs
3032 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies
859 117 67 1 SCOP 48726 Immunoglobulin
706 603 140 10 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
535 524 114 3 SCOP 56112 Protein kinase-like (PK-like)
433 107 72 0 SCOP 57196 EGF/Laminin
324 274 66 13 SCOP 48371 ARM repeat
308 159 43 0 SCOP 57667 beta-beta-alpha zinc fingers
275 201 50 1 SCOP 54928 RNA-binding domain, RBD
238 210 41 1 SCOP 50978 WD40 repeat-like
212 193 98 7 SCOP 50729 PH domain-like
207 126 38 1 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
205 156 28 4 SCOP 46689 Homeodomain-like
192 45 27 6 SCOP 81296 E set domains
169 123 29 1 SCOP 48452 TPR-like
167 29 20 0 SCOP 57362 BPTI-like
158 136 53 3 SCOP 57850 RING/U-box
150 108 53 1 SCOP 48403 Ankyrin repeat
149 17 14 1 SCOP 46966 Spectrin repeat
139 98 42 1 SCOP 50156 PDZ domain-like
139 66 50 0 SCOP 49265 Fibronectin type III
137 123 46 4 SCOP 47473 EF-hand
130 123 35 8 SCOP 51735 NAD(P)-binding Rossmann-fold domains
129 27 20 0 SCOP 57424 LDL receptor-like module
122 102 56 4 SCOP 54236 Ubiquitin-like
121 85 26 0 SCOP 81324 Voltage-gated potassium channels
121 21 16 0 SCOP 49313 Cadherin-like
118 75 39 4 SCOP 49899 Concanavalin A-like lectins/glucanases
117 110 35 7 SCOP 46785 "Winged helix" DNA-binding domain
113 110 8 0 SCOP 81321 Family A G protein-coupled receptor-like
113 84 40 1 SCOP 57903 FYVE/PHD zinc finger
110 77 25 4 SCOP 52833 Thioredoxin-like
107 98 19 3 SCOP 52799 (Phosphotyrosine protein) phosphatases II
106 102 30 8 SCOP 54001 Cysteine proteinases
106 29 19 0 SCOP 82895 TSP-1 type 1 repeat
105 92 34 5 SCOP 50249 Nucleic acid-binding proteins
104 53 22 1 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
100 97 14 13 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
99 97 7 0 SCOP 103473 MFS general substrate transporter
89 68 49 1 SCOP 50044 SH3-domain
89 69 27 1 SCOP 52058 L domain-like
88 85 12 10 SCOP 53474 alpha/beta-Hydrolases
87 84 23 2 SCOP 54695 POZ domain
83 45 13 5 SCOP 53067 Actin-like ATPase domain
76 49 27 3 SCOP 53300 vWA-like
74 26 21 0 SCOP 49854 Spermadhesin, CUB domain
72 42 7 0 SCOP 82866 Multidrug efflux transporter AcrB transmembrane domain
72 44 34 0 SCOP 57184 Growth factor receptor domain
71 63 11 1 SCOP 90112 Neurotransmitter-gated ion-channel transmembrane pore
68 50 36 1 SCOP 49562 C2 domain (Calcium/lipid-binding domain, CaLB)
67 59 28 1 SCOP 55550 SH2 domain
64 64 10 3 SCOP 56300 Metallo-dependent phosphatases
64 63 21 6 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
64 38 20 1 SCOP 47370 Bromodomain
62 21 13 0 SCOP 57625 Invertebrate chitin-binding proteins
61 60 10 0 SCOP 63712 Nicotinic receptor ligand binding domain-like
60 60 11 1 SCOP 48508 Nuclear receptor ligand-binding domain
57 57 18 6 SCOP 56784 HAD-like
56 46 22 4 SCOP 51905 FAD/NAD(P)-binding domain
55 55 7 2 SCOP 47113 Histone-fold
54 53 29 6 SCOP 54211 Ribosomal protein S5 domain 2-like
52 52 7 7 SCOP 53448 Nucleotide-diphospho-sugar transferases
52 52 9 0 SCOP 47459 HLH, helix-loop-helix DNA-binding domain
50 48 18 5 SCOP 53098 Ribonuclease H-like
50 28 12 1 SCOP 47923 Ypt/Rab-GAP domain of gyp1p
49 36 12 1 SCOP 63748 Tudor/PWWP/MBT
48 48 22 2 SCOP 55681 Class II aaRS and biotin synthetases
47 47 11 3 SCOP 53187 Zn-dependent exopeptidases
46 45 6 2 SCOP 50182 Sm-like ribonucleoproteins
46 43 12 1 SCOP 47095 HMG-box
46 29 10 2 SCOP 47954 Cyclin-like
46 34 20 0 SCOP 47769 SAM/Pointed domain
46 37 29 0 SCOP 57889 Cysteine-rich domain
45 45 18 8 SCOP 51445 (Trans)glycosidases
43 43 16 2 SCOP 103657 BAR/IMD domain-like
43 43 6 1 SCOP 49764 HSP20-like chaperones
42 15 12 0 SCOP 90257 Myosin rod fragments
42 29 12 0 SCOP 90229 CCCH zinc finger
42 18 13 0 SCOP 57535 Complement control module/SCR domain
41 40 13 2 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
41 16 9 1 SCOP 63825 YWTD domain
40 40 24 1 SCOP 48350 GTPase activation domain, GAP
39 39 11 3 SCOP 54495 UBC-like
39 37 13 2 SCOP 52047 RNI-like
39 37 18 2 SCOP 50447 Translation proteins
39 39 18 1 SCOP 46565 Chaperone J-domain
38 38 16 1 SCOP 47576 Calponin-homology domain, CH-domain
38 38 6 1 SCOP 49354 PapD-like
36 28 17 0 SCOP 54160 Chromo domain-like
36 15 9 0 SCOP 57414 Hairpin loop containing domain-like
35 35 19 0 SCOP 81383 F-box domain
35 23 16 0 SCOP 51045 WW domain
34 34 4 1 SCOP 103506 Mitochondrial carrier
33 31 17 3 SCOP 52374 Nucleotidylyl transferase
32 32 6 4 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
32 25 9 1 SCOP 117281 Kelch motif
32 14 12 0 SCOP 52113 BRCT domain
31 30 18 0 SCOP 46934 UBA-like
31 31 19 1 SCOP 48065 DBL homology domain (DH-domain)
31 8 7 0 SCOP 100895 Kazal-type serine protease inhibitors
31 30 17 1 SCOP 47031 Second domain of FERM
30 29 23 4 SCOP 49785 Galactose-binding domain-like
30 20 12 0 SCOP 90123 ABC transporter transmembrane region
30 27 8 2 SCOP 56436 C-type lectin-like
29 27 9 1 SCOP 56801 Acetyl-CoA synthetase-like
29 22 15 0 SCOP 54768 dsRNA-binding domain-like
28 27 5 2 SCOP 56281 Metallo-hydrolase/oxidoreductase
28 26 10 1 SCOP 54631 CBS-domain pair
28 28 14 1 SCOP 82199 SET domain
27 13 6 1 SCOP 55753 Actin depolymerizing proteins
27 17 13 1 SCOP 51206 cAMP-binding domain-like
27 27 11 2 SCOP 49879 SMAD/FHA domain
27 27 5 1 SCOP 50814 Lipocalins
26 26 4 5 SCOP 53383 PLP-dependent transferases
26 26 4 0 SCOP 46458 Globin-like
26 26 2 1 SCOP 56574 Serpins
26 13 10 2 SCOP 52777 CoA-dependent acyltransferases
26 24 5 0 SCOP 57959 Leucine zipper domain
25 24 6 1 SCOP 48208 Six-hairpin glycosidases
25 21 8 2 SCOP 47413 lambda repressor-like DNA-binding domains
25 24 3 1 SCOP 55307 Tubulin C-terminal domain-like
24 24 3 2 SCOP 53254 Phosphoglycerate mutase-like
24 23 5 2 SCOP 53649 Alkaline phosphatase-like
24 24 14 0 SCOP 81995 beta-sandwich domain of Sec23/24
24 24 13 1 SCOP 81665 Calcium ATPase, transmembrane domain M
24 24 10 1 SCOP 56204 Hect, E3 ligase catalytic domain
23 21 15 0 SCOP 50998 Quinoprotein alcohol dehydrogenase-like
23 15 9 0 SCOP 55785 PYP-like sensor domain (PAS domain)
23 23 2 1 SCOP 52490 Tubulin nucleotide-binding domain-like
23 14 8 0 SCOP 55394 Bactericidal permeability-increasing protein, BPI
22 21 8 2 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
22 18 4 2 SCOP 69572 Activating enzymes of the ubiquitin-like proteins
22 19 10 1 SCOP 57997 Tropomyosin
22 22 11 0 SCOP 47986 DEATH domain
21 21 7 4 SCOP 64356 SNARE-like
21 13 8 1 SCOP 56024 Phospholipase D/nuclease
21 7 7 1 SCOP 47220 alpha-catenin/vinculin-like
20 20 9 1 SCOP 50891 Cyclophilin-like
20 20 5 2 SCOP 52029 GroEL apical domain-like
20 20 9 1 SCOP 81660 Metal cation-transporting ATPase, ATP-binding domain N
20 5 4 0 SCOP 81698 FF domain
19 19 15 1 SCOP 51695 PLC-like phosphodiesterases
19 14 9 1 SCOP 50985 RCC1/BLIP-II
19 19 9 0 SCOP 51197 Clavaminate synthase-like
19 19 11 1 SCOP 53822 Periplasmic binding protein-like I
19 19 5 0 SCOP 57302 Snake toxin-like
19 19 8 1 SCOP 81653 Calcium ATPase, transduction domain A
18 18 5 1 SCOP 50104 Translation proteins SH3-like domain
18 16 8 1 SCOP 58038 SNARE fusion complex
18 18 5 2 SCOP 55315 L30e-like
18 18 9 1 SCOP 64268 PX domain
18 10 6 1 SCOP 53901 Thiolase-like
18 18 7 1 SCOP 47616 GST C-terminal domain-like
18 18 4 0 SCOP 117892 Band 7/SPFH domain
18 16 4 0 SCOP 48652 Tetraspanin
18 18 7 3 SCOP 49417 p53-like transcription factors
17 15 5 0 SCOP 100950 NagB/RpiA/CoA transferase-like
17 17 4 1 SCOP 48592 GroEL equatorial domain-like
17 7 6 1 SCOP 53738 Phosphoglucomutase, first 3 domains
17 17 8 1 SCOP 74788 Cullin repeat-like
17 17 10 1 SCOP 101447 Formin homology 2 domain (FH2 domain)
17 13 3 1 SCOP 141739 MFPT repeat-like
17 6 6 0 SCOP 90193 Notch domain
16 14 12 1 SCOP 55073 Nucleotide cyclase
16 14 9 1 SCOP 57783 Zinc beta-ribbon
16 12 5 0 SCOP 143990 YbiA-like
16 6 4 1 SCOP 63411 LuxS/MPP-like metallohydrolase
16 16 12 1 SCOP 101898 NHL repeat
16 15 13 1 SCOP 48097 Regulator of G-protein signaling, RGS
16 8 4 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
15 15 4 1 SCOP 81338 Aquaporin-like
15 12 7 3 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
15 15 3 1 SCOP 55811 Nudix
15 15 7 2 SCOP 55961 Bet v1-like
15 13 4 0 SCOP 103481 Multidrug resistance efflux transporter EmrE
15 15 6 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
15 15 8 0 SCOP 68906 SAP domain
15 15 3 1 SCOP 57501 Cystine-knot cytokines
15 15 5 1 SCOP 47895 Transducin (alpha subunit), insertion domain
15 12 11 0 SCOP 57756 Retrovirus zinc finger-like domains
14 6 5 0 SCOP 47336 ACP-like
14 14 9 3 SCOP 56672 DNA/RNA polymerases
14 14 6 2 SCOP 54427 NTF2-like
14 14 5 0 SCOP 81340 Clc chloride channel
14 14 7 0 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
14 14 3 0 SCOP 48019 post-AAA+ oligomerization domain-like
14 11 6 0 SCOP 55060 GHMP Kinase, C-terminal domain
14 11 3 1 SCOP 48445 14-3-3 protein
14 14 9 1 SCOP 52087 CRAL/TRIO domain
14 14 8 3 SCOP 48464 ENTH/VHS domain
14 13 8 0 SCOP 140741 RUN domain-like
14 10 5 1 SCOP 109905 Surp module (SWAP domain)
14 10 5 0 SCOP 64593 Intermediate filament protein, coiled coil region
14 14 2 0 SCOP 54849 GroEL-intermediate domain like
13 13 5 1 SCOP 55120 Pseudouridine synthase
13 13 8 1 SCOP 88723 PIN domain-like
13 11 7 1 SCOP 54534 FKBP-like
13 13 8 1 SCOP 48113 Heme-dependent peroxidases
13 9 7 0 SCOP 81901 HCP-like
13 13 7 2 SCOP 56219 DNase I-like
13 13 7 1 SCOP 82171 DPP6 N-terminal domain-like
13 11 5 2 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
13 8 5 1 SCOP 54980 EF-G C-terminal domain-like
13 9 7 0 SCOP 90209 Ran binding protein zinc finger-like
13 13 5 0 SCOP 144232 HIT/MYND zinc finger-like
13 13 7 1 SCOP 54373 FAD-linked reductases, C-terminal domain
13 13 7 0 SCOP 101576 Supernatant protein factor (SPF), C-terminal domain
13 10 7 0 SCOP 82927 Cysteine-rich DNA binding domain, (DM domain)
12 7 3 0 SCOP 81333 F1F0 ATP synthase subunit C
12 10 7 0 SCOP 52821 Rhodanese/Cell cycle control phosphatase
12 12 3 0 SCOP 144091 Rhomboid-like
12 12 9 1 SCOP 52954 Class II aaRS ABD-related
12 12 3 1 SCOP 48264 Cytochrome P450
12 12 10 3 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
12 12 4 0 SCOP 55797 PR-1-like
12 12 5 0 SCOP 161111 Cation efflux protein transmembrane domain-like
12 12 4 0 SCOP 50370 Ricin B-like lectins
12 12 5 1 SCOP 47661 t-snare proteins
12 12 3 0 SCOP 90250 Troponin coil-coiled subunits
12 12 9 0 SCOP 57845 B-box zinc-binding domain
12 12 7 1 SCOP 46774 ARID-like
12 12 6 1 SCOP 49599 TRAF domain-like
12 12 6 1 SCOP 81811 Helical domain of Sec23/24
11 10 6 1 SCOP 81606 PP2C-like
11 11 3 0 SCOP 69593 Glycerol-3-phosphate (1)-acyltransferase
11 11 8 2 SCOP 52402 Adenine nucleotide alpha hydrolases-like
11 10 5 1 SCOP 50129 GroES-like
11 11 5 1 SCOP 109604 HD-domain/PDEase-like
11 11 3 1 SCOP 50630 Acid proteases
11 11 5 0 SCOP 54897 Protease propeptides/inhibitors
11 10 7 0 SCOP 52151 FabD/lysophospholipase-like
11 11 2 1 SCOP 161070 SNF-like
11 9 5 2 SCOP 47203 Acyl-CoA dehydrogenase C-terminal domain-like
11 11 3 0 SCOP 54403 Cystatin/monellin
11 11 3 2 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
11 11 6 1 SCOP 56366 SMAD MH1 domain
11 11 5 0 SCOP 82919 Zn-finger domain of Sec23/24
10 10 8 4 SCOP 56059 Glutathione synthetase ATP-binding domain-like
10 10 5 2 SCOP 54197 HIT-like
10 10 6 2 SCOP 53137 Translational machinery components
10 10 7 1 SCOP 55920 Creatinase/aminopeptidase
10 10 2 2 SCOP 51316 Mss4-like
10 10 5 1 SCOP 51395 FMN-linked oxidoreductases
10 10 4 2 SCOP 56104 SAICAR synthase-like
10 10 5 0 SCOP 47027 Acyl-CoA binding protein
10 10 2 0 SCOP 50494 Trypsin-like serine proteases
10 10 8 2 SCOP 81301 Nucleotidyltransferase
10 10 5 3 SCOP 52467 DHS-like NAD/FAD-binding domain
10 6 5 0 SCOP 50199 Staphylococcal nuclease
10 10 5 0 SCOP 51011 Glycosyl hydrolase domain
10 9 7 0 SCOP 57610 Thyroglobulin type-1 domain
10 10 9 1 SCOP 48366 Ras GEF
10 9 8 1 SCOP 74924 Cap-Gly domain
10 10 5 1 SCOP 101690 PAZ domain
10 9 5 0 SCOP 117839 WWE domain
10 10 5 1 SCOP 82754 C-terminal, gelsolin-like domain of Sec23/24
10 5 3 0 SCOP 57567 Serine protease inhibitors
9 8 6 2 SCOP 53271 PRTase-like
9 9 2 2 SCOP 53613 Ribokinase-like
9 9 3 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
9 8 4 3 SCOP 52096 ClpP/crotonase
9 9 1 1 SCOP 56655 Carbohydrate phosphatase
9 9 2 0 SCOP 46579 Prefoldin
9 9 4 1 SCOP 144000 Oxysterol-binding protein-like
9 9 8 2 SCOP 74650 Galactose mutarotase-like
9 9 3 1 SCOP 56601 beta-lactamase/transpeptidase-like
9 9 5 2 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
9 9 4 0 SCOP 74853 Lamin A/C globular tail domain
9 8 6 1 SCOP 81631 PAP/OAS1 substrate-binding domain
9 9 6 1 SCOP 111347 Rap/Ran-GAP
9 5 4 1 SCOP 82109 MIR domain
9 9 3 0 SCOP 47676 Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
9 9 5 1 SCOP 49447 Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
9 6 5 0 SCOP 69179 Integrin domains
9 5 3 0 SCOP 46585 HR1 repeat
9 8 4 0 SCOP 55666 Ribonuclease PH domain 2-like
9 9 2 2 SCOP 103243 KA1-like
9 9 3 0 SCOP 54556 Chitinase insertion domain
9 1 1 0 SCOP 75399 Plakin repeat
8 8 4 3 SCOP 51556 Metallo-dependent hydrolases
8 8 3 0 SCOP 57829 Zn-binding ribosomal proteins
8 8 3 0 SCOP 54999 Ribosomal protein S10
8 5 5 0 SCOP 47060 S15/NS1 RNA-binding domain
8 8 3 1 SCOP 53720 ALDH-like
8 8 2 1 SCOP 51430 NAD(P)-linked oxidoreductase
8 8 2 1 SCOP 56815 Sec1/munc18-like (SM) proteins
8 8 6 1 SCOP 88713 Glycoside hydrolase/deacetylase
8 8 3 1 SCOP 52768 Arginase/deacetylase
8 5 5 0 SCOP 69065 RNase III domain-like
8 3 2 0 SCOP 82153 FAS1 domain
8 8 8 2 SCOP 88697 PUA domain-like
8 8 4 2 SCOP 56645 Acyl-CoA dehydrogenase NM domain-like
8 5 3 0 SCOP 47781 RuvA domain 2-like
8 8 6 1 SCOP 55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
8 8 7 2 SCOP 52343 Ferredoxin reductase-like, C-terminal NADP-linked domain
8 8 4 0 SCOP 48056 Di-copper centre-containing domain
8 8 4 1 SCOP 48225 Seven-hairpin glycosidases
8 8 7 2 SCOP 63380 Riboflavin synthase domain-like
8 8 4 1 SCOP 63737 Leukotriene A4 hydrolase N-terminal domain
8 6 6 1 SCOP 158702 Sec63 N-terminal domain-like
8 7 5 0 SCOP 118310 AN1-like Zinc finger
8 8 4 0 SCOP 111418 Hormone receptor domain
8 8 5 1 SCOP 48425 Sec7 domain
8 8 3 0 SCOP 75553 Smc hinge domain
8 7 3 1 SCOP 49758 Calpain large subunit, middle domain (domain III)
8 5 2 0 SCOP 140383 BSD domain-like
7 7 4 0 SCOP 111331 NAD kinase/diacylglycerol kinase-like
7 7 3 1 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
7 7 3 1 SCOP 48576 Terpenoid synthases
7 6 3 2 SCOP 48239 Terpenoid cyclases/Protein prenyltransferases
7 7 2 1 SCOP 56019 The spindle assembly checkpoint protein mad2
7 6 5 0 SCOP 51126 Pectin lyase-like
7 4 2 1 SCOP 69645 Arp2/3 complex subunits
7 7 5 0 SCOP 55856 Cytochrome b5-like heme/steroid binding domain
7 7 2 1 SCOP 89124 Nop domain
7 7 4 1 SCOP 55186 ThrRS/AlaRS common domain
7 7 7 1 SCOP 52743 Subtilisin-like
7 4 3 1 SCOP 55979 DNA clamp
7 5 5 0 SCOP 55658 L9 N-domain-like
7 7 5 0 SCOP 57863 ArfGap/RecO-like zinc finger
7 7 4 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
7 4 3 1 SCOP 55945 TATA-box binding protein-like
7 6 4 1 SCOP 100934 Heat shock protein 70kD (HSP70), C-terminal subdomain
7 7 5 1 SCOP 82708 R3H domain
7 7 2 1 SCOP 101152 Mob1/phocein
7 7 6 0 SCOP 54277 CAD & PB1 domains
7 4 3 1 SCOP 89837 Doublecortin (DC)
7 7 2 1 SCOP 144074 E2F-DP heterodimerization region
7 7 4 1 SCOP 75632 Cullin homology domain
7 2 2 0 SCOP 57603 FnI-like domain
7 6 3 0 SCOP 47862 Saposin
7 7 3 1 SCOP 63501 Frizzled cysteine-rich domain
6 5 4 2 SCOP 52317 Class I glutamine amidotransferase-like
6 6 2 1 SCOP 53167 Purine and uridine phosphorylases
6 6 3 0 SCOP 56808 Ribosomal protein L1
6 6 2 1 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
6 3 2 1 SCOP 53784 Phosphofructokinase
6 6 3 0 SCOP 55174 Alpha-L RNA-binding motif
6 6 4 1 SCOP 54862 4Fe-4S ferredoxins
6 5 2 1 SCOP 54637 Thioesterase/thiol ester dehydrase-isomerase
6 6 3 0 SCOP 63829 Calcium-dependent phosphotriesterase
6 6 2 0 SCOP 48317 Acid phosphatase/Vanadium-dependent haloperoxidase
6 6 1 2 SCOP 52972 ITPase-like
6 6 4 0 SCOP 55257 RBP11-like subunits of RNA polymerase
6 6 6 2 SCOP 52283 Formate/glycerate dehydrogenase catalytic domain-like
6 6 3 1 SCOP 55909 Pentein
6 6 5 2 SCOP 55931 Glutamine synthetase/guanido kinase
6 6 3 1 SCOP 51069 Carbonic anhydrase
6 5 3 2 SCOP 54593 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
6 6 4 1 SCOP 103025 Folate-binding domain
6 6 5 1 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
6 6 4 0 SCOP 52200 Toll/Interleukin receptor TIR domain
6 6 3 0 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
6 6 2 1 SCOP 52922 TK C-terminal domain-like
6 4 2 1 SCOP 55973 S-adenosylmethionine synthetase
6 5 4 0 SCOP 51971 Nucleotide-binding domain
6 6 2 1 SCOP 140990 FtsH protease domain-like
6 6 4 1 SCOP 55957 Phosphoglucomutase, C-terminal domain
6 6 3 0 SCOP 48670 Transducin (heterotrimeric G protein), gamma chain
6 6 5 1 SCOP 101912 Sema domain
6 6 4 0 SCOP 158573 GINS helical bundle-like
6 6 5 0 SCOP 82671 SEA domain
6 6 5 1 SCOP 109993 VPS9 domain
6 4 4 1 SCOP 116846 MIT domain
6 3 1 0 SCOP 54713 Elongation factor Ts (EF-Ts), dimerisation domain
6 6 1 1 SCOP 54511 GFP-like
6 5 4 1 SCOP 100909 IP3 receptor type 1 binding core, domain 2
5 5 2 1 SCOP 51569 Aldolase
5 5 2 0 SCOP 53927 Cytidine deaminase-like
5 5 2 1 SCOP 75304 Amidase signature (AS) enzymes
5 5 4 2 SCOP 53697 SIS domain
5 5 3 0 SCOP 110324 Ribosomal L27 protein-like
5 5 1 1 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
5 5 4 1 SCOP 50715 Ribosomal protein L25-like
5 4 2 1 SCOP 54648 DLC
5 5 2 2 SCOP 51182 RmlC-like cupins
5 5 4 1 SCOP 47819 HRDC-like
5 5 3 1 SCOP 49777 PEBP-like
5 3 2 0 SCOP 55008 HMA, heavy metal-associated domain
5 5 3 0 SCOP 102712 JAB1/MPN domain
5 4 4 2 SCOP 46955 Putative DNA-binding domain
5 5 4 1 SCOP 51230 Single hybrid motif
5 5 2 0 SCOP 48173 Cryptochrome/photolyase FAD-binding domain
5 5 3 1 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
5 5 4 3 SCOP 100939 SPOC domain-like
5 4 3 0 SCOP 49452 Starch-binding domain-like
5 5 3 1 SCOP 56719 Type II DNA topoisomerase
5 5 5 0 SCOP 48334 DNA repair protein MutS, domain III
5 3 2 0 SCOP 54810 GMP synthetase C-terminal dimerisation domain
5 5 2 0 SCOP 160240 Cation efflux protein cytoplasmic domain-like
5 5 3 0 SCOP 117289 Nucleoporin domain
5 5 3 0 SCOP 47794 Rad51 N-terminal domain-like
5 5 4 0 SCOP 46938 CRAL/TRIO N-terminal domain
5 5 2 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
5 3 3 1 SCOP 49742 PHM/PNGase F
5 5 3 1 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
5 5 2 1 SCOP 81271 TGS-like
5 5 2 0 SCOP 160696 BTG domain-like
5 5 4 0 SCOP 103575 Plexin repeat
5 5 4 0 SCOP 57440 Kringle-like
5 5 4 0 SCOP 103107 Hypothetical protein c14orf129, hspc210
5 5 4 1 SCOP 88688 Families 57/38 glycoside transferase middle domain
5 4 4 0 SCOP 50911 Mannose 6-phosphate receptor domain
5 2 2 1 SCOP 109885 I/LWEQ domain
5 5 3 0 SCOP 50784 Transcription factor IIA (TFIIA), beta-barrel domain
5 5 2 0 SCOP 47655 STAT
5 5 4 0 SCOP 55277 GYF domain
5 5 3 1 SCOP 63887 P-domain of calnexin/calreticulin
5 5 2 0 SCOP 158235 SOCS box-like
5 5 2 1 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
5 5 3 0 SCOP 158230 PRP4-like
4 4 2 0 SCOP 46911 Ribosomal protein S18
4 4 2 2 SCOP 51366 Ribulose-phoshate binding barrel
4 4 4 1 SCOP 54686 Ribosomal protein L16p/L10e
4 4 3 0 SCOP 52080 Ribosomal proteins L15p and L18e
4 4 1 1 SCOP 55831 Thymidylate synthase/dCMP hydroxymethylase
4 4 3 1 SCOP 52218 Flavoproteins
4 4 3 1 SCOP 75217 alpha/beta knot
4 4 3 0 SCOP 52980 Restriction endonuclease-like
4 4 2 0 SCOP 51161 Trimeric LpxA-like enzymes
4 4 2 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
4 4 4 0 SCOP 54292 2Fe-2S ferredoxin-like
4 4 3 0 SCOP 102114 Radical SAM enzymes
4 4 2 0 SCOP 101908 Putative isomerase YbhE
4 3 2 0 SCOP 46561 Ribosomal protein L29 (L29p)
4 4 1 1 SCOP 144122 Tim10-like
4 4 1 1 SCOP 54919 Nucleoside diphosphate kinase, NDK
4 4 2 1 SCOP 111126 Ligand-binding domain in the NO signalling and Golgi transport
4 3 3 0 SCOP 55159 eIF1-like
4 4 3 1 SCOP 56399 ADP-ribosylation
4 4 1 0 SCOP 55331 Tautomerase/MIF
4 4 3 1 SCOP 50022 ISP domain
4 3 3 1 SCOP 110857 Gamma-glutamyl cyclotransferase-like
4 4 3 2 SCOP 53218 Molybdenum cofactor biosynthesis proteins
4 4 2 0 SCOP 56747 Prim-pol domain
4 4 3 0 SCOP 69322 Tricorn protease domain 2
4 4 3 1 SCOP 69318 Integrin alpha N-terminal domain
4 4 2 0 SCOP 54106 LysM domain
4 2 2 0 SCOP 82185 Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
4 4 1 0 SCOP 159034 Mib/herc2 domain-like
4 4 3 0 SCOP 160059 PriA/YqbF domain
4 4 3 1 SCOP 52210 Succinyl-CoA synthetase domains
4 4 2 1 SCOP 56425 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
4 4 2 1 SCOP 63882 MoeA N-terminal region -like
4 4 1 0 SCOP 56973 Aerolisin/ETX pore-forming domain
4 4 3 2 SCOP 49348 Clathrin adaptor appendage domain
4 4 2 1 SCOP 56542 Substrate-binding domain of HMG-CoA reductase
4 4 3 0 SCOP 50923 Hemopexin-like domain
4 2 2 0 SCOP 49723 Lipase/lipooxygenase domain (PLAT/LH2 domain)
4 4 3 1 SCOP 69000 FAD-dependent thiol oxidase
4 4 3 1 SCOP 47874 Annexin
4 4 3 1 SCOP 63570 PABC (PABP) domain
4 4 2 1 SCOP 55455 SRF-like
4 4 1 1 SCOP 110004 Glycolipid transfer protein, GLTP
4 4 2 0 SCOP 63707 Ganglioside M2 (gm2) activator
4 4 1 1 SCOP 88798 N-terminal, heterodimerisation domain of RBP7 (RpoE)
4 4 2 0 SCOP 48340 Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
4 4 2 1 SCOP 101233 PWI domain
4 4 3 0 SCOP 55149 Pepsin inhibitor-3
4 4 2 0 SCOP 57552 Blood coagulation inhibitor (disintegrin)
4 4 4 0 SCOP 110942 HSP90 C-terminal domain
4 4 3 1 SCOP 117018 ATP-dependent DNA ligase DNA-binding domain
4 4 2 1 SCOP 81382 Skp1 dimerisation domain-like
4 1 1 0 SCOP 47045 RAP domain-like
4 3 3 1 SCOP 82615 Polo-box domain
4 4 3 1 SCOP 54585 Cdc48 domain 2-like
4 4 2 1 SCOP 55035 NAD-binding domain of HMG-CoA reductase
4 4 4 0 SCOP 53150 DNA repair protein MutS, domain II
3 3 2 1 SCOP 52166 Ribosomal protein L4
3 3 3 0 SCOP 64263 Prokaryotic ribosomal protein L17
3 3 2 2 SCOP 51658 Xylose isomerase-like
3 3 1 1 SCOP 75620 Release factor
3 3 1 1 SCOP 82649 SufE/NifU
3 3 3 0 SCOP 160369 Ribosomal protein L10-like
3 3 2 1 SCOP 51412 Inosine monophosphate dehydrogenase (IMPDH)
3 3 2 1 SCOP 52313 Ribosomal protein S2
3 3 1 0 SCOP 52042 Ribosomal protein L32e
3 3 2 0 SCOP 54575 Ribosomal protein L31e
3 3 1 1 SCOP 54762 Signal recognition particle alu RNA binding heterodimer, SRP9/14
3 3 1 0 SCOP 81524 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
3 3 1 1 SCOP 57798 Casein kinase II beta subunit
3 3 1 0 SCOP 51306 LexA/Signal peptidase
3 3 2 1 SCOP 48439 Protein prenylyltransferase
3 3 2 1 SCOP 49329 Cu,Zn superoxide dismutase-like
3 3 3 0 SCOP 47072 Cysteine alpha-hairpin motif
3 3 1 0 SCOP 103486 V-type ATP synthase subunit C
3 3 1 1 SCOP 55418 eIF4e-like
3 3 1 0 SCOP 55770 Profilin (actin-binding protein)
3 3 3 1 SCOP 52266 SGNH hydrolase
3 3 2 1 SCOP 53795 PEP carboxykinase-like
3 3 3 0 SCOP 55718 SCP-like
3 3 2 1 SCOP 52016 LeuD/IlvD-like
3 3 2 0 SCOP 111352 Ammonium transporter
3 3 2 0 SCOP 58100 Bacterial hemolysins
3 3 3 0 SCOP 50242 TIMP-like
3 3 2 1 SCOP 50993 Peptidase/esterase 'gauge' domain
3 3 1 0 SCOP 52425 Cryptochrome/photolyase, N-terminal domain
3 3 3 0 SCOP 50969 YVTN repeat-like/Quinoprotein amine dehydrogenase
3 3 1 1 SCOP 55804 Phoshotransferase/anion transport protein
3 3 1 1 SCOP 103196 Roadblock/LC7 domain
3 3 1 1 SCOP 56534 Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
3 3 2 1 SCOP 54984 eEF-1beta-like
3 3 3 1 SCOP 46548 alpha-helical ferredoxin
3 3 3 0 SCOP 53092 Creatinase/prolidase N-terminal domain
3 3 2 0 SCOP 158832 Tex N-terminal region-like
3 3 2 0 SCOP 55103 FAD-linked oxidases, C-terminal domain
3 3 2 0 SCOP 56176 FAD-binding/transporter-associated domain-like
3 3 3 0 SCOP 69989 C-terminal domain of PLC-beta
3 3 2 1 SCOP 52935 PK C-terminal domain-like
3 2 2 0 SCOP 160481 BRK domain-like
3 3 3 0 SCOP 49464 Carboxypeptidase regulatory domain-like
3 3 3 1 SCOP 52440 PreATP-grasp domain
3 3 2 1 SCOP 68923 PEP carboxykinase N-terminal domain
3 2 2 0 SCOP 161093 MgtE membrane domain-like
3 3 2 1 SCOP 110019 ERO1-like
3 3 2 0 SCOP 52075 Outer arm dynein light chain 1
3 3 1 0 SCOP 46977 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
3 3 2 0 SCOP 55326 PurM N-terminal domain-like
3 3 1 1 SCOP 56327 LDH C-terminal domain-like
3 3 2 0 SCOP 100879 Lesion bypass DNA polymerase (Y-family), little finger domain
3 3 3 1 SCOP 56496 Fibrinogen C-terminal domain-like
3 2 2 0 SCOP 56053 Ribosomal protein L6
3 3 3 1 SCOP 81837 BEACH domain
3 3 2 1 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
3 3 2 0 SCOP 56994 Insulin-like
3 3 2 0 SCOP 47396 Transcription factor IIA (TFIIA), alpha-helical domain
3 3 2 0 SCOP 57924 Inhibitor of apoptosis (IAP) repeat
3 3 3 1 SCOP 82051 Obg GTP-binding protein N-terminal domain
3 3 3 0 SCOP 52025 PA domain
3 3 2 0 SCOP 101288 L27 domain
3 3 3 0 SCOP 63451 LEM domain
3 3 1 0 SCOP 90188 Somatomedin B domain
3 3 2 0 SCOP 47050 VHP, Villin headpiece domain
3 2 2 0 SCOP 143791 DUSP-like
3 3 1 1 SCOP 140809 Rhabdovirus nucleoprotein-like
3 3 2 1 SCOP 89942 eEF1-gamma domain
3 1 1 0 SCOP 47762 PAH2 domain
3 3 3 0 SCOP 140111 Endosomal sorting complex assembly domain
3 3 2 1 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
3 3 3 0 SCOP 109715 DEK C-terminal domain
3 3 2 1 SCOP 50916 Rap30/74 interaction domains
3 3 3 1 SCOP 47212 FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)
3 3 2 1 SCOP 110217 DNA-binding protein LAG-1 (CSL)
3 3 2 0 SCOP 63763 SAND domain-like
3 3 2 0 SCOP 68993 FAT domain of focal adhesion kinase
3 3 3 0 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
3 3 2 2 SCOP 55711 Subdomain of clathrin and coatomer appendage domain
3 3 3 0 SCOP 64586 C-terminal domain of ProRS
3 3 1 0 SCOP 75445 D-ribose-5-phosphate isomerase (RpiA), lid domain
3 3 2 0 SCOP 101790 Aminomethyltransferase beta-barrel domain
3 3 2 1 SCOP 89009 GAT-like domain
2 2 2 1 SCOP 53790 Tetrapyrrole methylase
2 2 2 1 SCOP 47973 Ribosomal protein S7
2 2 2 0 SCOP 54843 Ribosomal protein L22
2 2 1 1 SCOP 50193 Ribosomal protein L14
2 2 1 0 SCOP 46946 S13-like H2TH domain
2 1 1 0 SCOP 56214 4'-phosphopantetheinyl transferase
2 2 1 1 SCOP 47240 Ferritin-like
2 2 1 1 SCOP 53748 Phosphoglycerate kinase
2 2 2 1 SCOP 53850 Periplasmic binding protein-like II
2 2 1 0 SCOP 52161 Ribosomal protein L13
2 2 2 1 SCOP 51730 FAD-linked oxidoreductase
2 2 1 1 SCOP 48557 L-aspartase-like
2 2 1 1 SCOP 55821 YrdC/RibB
2 2 2 1 SCOP 48150 DNA-glycosylase
2 2 1 0 SCOP 89360 HesB-like domain
2 2 1 1 SCOP 51713 tRNA-guanine transglycosylase
2 2 2 1 SCOP 56276 S-adenosylmethionine decarboxylase
2 2 2 1 SCOP 64005 Undecaprenyl diphosphate synthase
2 2 1 0 SCOP 54285 MoaD/ThiS
2 2 2 0 SCOP 55205 EPT/RTPC-like
2 2 1 0 SCOP 82657 BolA-like
2 2 2 2 SCOP 51419 PLP-binding barrel
2 2 2 1 SCOP 144217 CSL zinc finger
2 2 2 1 SCOP 52949 Macro domain-like
2 2 1 0 SCOP 55469 FMN-dependent nitroreductase-like
2 2 2 1 SCOP 48256 Citrate synthase
2 2 1 0 SCOP 142897 TFB5-like
2 2 1 0 SCOP 103456 Preprotein translocase SecE subunit
2 2 2 0 SCOP 140718 Mediator hinge subcomplex-like
2 2 2 2 SCOP 46626 Cytochrome c
2 2 1 1 SCOP 52499 Isochorismatase-like hydrolases
2 2 2 0 SCOP 63393 RNA polymerase subunits
2 2 1 2 SCOP 90096 Subunits of heterodimeric actin filament capping protein Capz
2 2 1 1 SCOP 56317 Carbon-nitrogen hydrolase
2 2 1 0 SCOP 48662 Ribosomal protein L39e
2 2 1 1 SCOP 140959 Indolic compounds 2,3-dioxygenase-like
2 2 1 1 SCOP 118203 Vacuolar ATP synthase subunit C
2 2 1 0 SCOP 47694 Cytochrome c oxidase subunit h
2 2 1 1 SCOP 69060 Arp2/3 complex 21 kDa subunit ARPC3
2 2 1 1 SCOP 64153 YjeF N-terminal domain-like
2 2 1 1 SCOP 143113 NAP-like
2 2 1 1 SCOP 46924 RNA polymerase subunit RPB10
2 2 2 1 SCOP 63562 RPB6/omega subunit-like
2 2 1 1 SCOP 81442 Cytochrome c oxidase subunit I-like
2 2 1 0 SCOP 53800 Chelatase
2 2 1 2 SCOP 55620 Tetrahydrobiopterin biosynthesis enzymes-like
2 2 1 0 SCOP 52091 SpoIIaa-like
2 2 2 1 SCOP 117916 Fe-S cluster assembly (FSCA) domain-like
2 2 1 0 SCOP 56524 Oxidoreductase molybdopterin-binding domain
2 2 2 0 SCOP 101744 Rof/RNase P subunit-like
2 2 2 0 SCOP 89550 PHP domain-like
2 2 1 1 SCOP 50692 ADC-like
2 2 2 1 SCOP 56762 HydB/Nqo4-like
2 2 2 0 SCOP 54736 ClpS-like
2 2 1 1 SCOP 50800 PK beta-barrel domain-like
2 2 2 1 SCOP 54518 Tubby C-terminal domain-like
2 2 2 0 SCOP 50952 Soluble quinoprotein glucose dehydrogenase
2 2 1 0 SCOP 110916 Peptidyl-tRNA hydrolase domain-like
2 2 2 0 SCOP 140931 Fic-like
2 2 1 0 SCOP 69786 YggU-like
2 2 2 1 SCOP 51604 Enolase C-terminal domain-like
2 2 2 1 SCOP 47592 SWIB/MDM2 domain
2 2 1 0 SCOP 56726 DNA topoisomerase IV, alpha subunit
2 2 2 0 SCOP 82704 AlbA-like
2 2 1 1 SCOP 74784 Translin
2 2 1 0 SCOP 116820 Rps17e-like
2 2 1 0 SCOP 160374 RplX-like
2 2 2 1 SCOP 102462 Peptidyl-tRNA hydrolase II
2 2 1 0 SCOP 63867 MoeA C-terminal domain-like
2 2 1 1 SCOP 55895 Ribonuclease Rh-like
2 2 2 0 SCOP 46589 tRNA-binding arm
2 2 2 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
2 2 1 0 SCOP 48619 Phospholipase A2, PLA2
2 2 2 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
2 2 2 0 SCOP 69304 Tricorn protease N-terminal domain
2 2 2 0 SCOP 50405 Actin-crosslinking proteins
2 2 2 0 SCOP 58026 Delta-sleep-inducing peptide immunoreactive peptide
2 2 2 0 SCOP 142921 WGR domain-like
2 2 2 1 SCOP 52129 Caspase-like
2 1 1 0 SCOP 158745 LanC-like
2 2 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
2 2 2 0 SCOP 47090 PGBD-like
2 2 2 0 SCOP 51294 Hedgehog/intein (Hint) domain
2 2 2 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
2 2 2 0 SCOP 54171 DNA-binding domain
2 2 2 1 SCOP 54826 Enolase N-terminal domain-like
2 2 1 0 SCOP 56042 PurM C-terminal domain-like
2 2 2 1 SCOP 53920 Fe-only hydrogenase
2 2 2 1 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
2 2 1 1 SCOP 101887 Apyrase
2 2 2 0 SCOP 75689 Zinc-binding domain of translation initiation factor 2 beta
2 2 2 0 SCOP 100966 Translation initiation factor 2 beta, aIF2beta, N-terminal domain
2 2 2 0 SCOP 55545 beta-N-acetylhexosaminidase-like domain
2 2 1 0 SCOP 54991 Anticodon-binding domain of PheRS
2 2 2 1 SCOP 55271 DNA repair protein MutS, domain I
2 1 1 0 SCOP 141072 CalX-like
2 2 1 0 SCOP 111357 Mitochondrial ATP synthase coupling factor 6
2 2 1 0 SCOP 81790 Myosin phosphatase inhibitor 17kDa protein, CPI-17
2 2 2 1 SCOP 50353 Cytokine
2 2 2 0 SCOP 56854 Bcl-2 inhibitors of programmed cell death
2 2 1 0 SCOP 49410 Alpha-macroglobulin receptor domain
2 2 1 0 SCOP 118359 Expressed protein At2g23090/F21P24.15
2 2 2 0 SCOP 47391 Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit
2 2 1 0 SCOP 47938 Functional domain of the splicing factor Prp18
2 2 2 0 SCOP 49303 beta-Galactosidase/glucuronidase domain
2 2 2 0 SCOP 158639 ENT-like
2 2 1 1 SCOP 140102 ISY1 domain-like
2 2 2 1 SCOP 116907 Hook domain
2 1 1 1 SCOP 140864 TROVE domain-like
2 2 1 1 SCOP 143875 ERH-like
2 2 2 0 SCOP 140856 USP8 N-terminal domain-like
2 2 1 0 SCOP 48479 Cytochrome c oxidase subunit E
2 2 2 0 SCOP 47836 Retroviral matrix proteins
2 2 2 1 SCOP 54747 Ribosomal L11/L12e N-terminal domain
2 2 1 0 SCOP 144292 occludin/ELL-like
2 1 1 1 SCOP 57933 TAZ domain
2 2 2 0 SCOP 118370 Vasodilator-stimulated phosphoprotein, VASP, tetramerisation domain
2 2 2 0 SCOP 46942 Elongation factor TFIIS domain 2
2 2 1 0 SCOP 48678 Moesin tail domain
2 2 2 1 SCOP 48034 Guanido kinase N-terminal domain
2 2 1 0 SCOP 89811 Amyloid beta a4 protein copper binding domain (domain 2)
2 2 1 0 SCOP 158553 TAFH domain-like
2 2 1 0 SCOP 140612 EB1 dimerisation domain-like
2 2 1 0 SCOP 56491 A heparin-binding domain
2 2 2 0 SCOP 47005 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
2 2 1 1 SCOP 109843 CAPPD, an extracellular domain of amyloid beta A4 protein
2 2 1 0 SCOP 81502 ISP transmembrane anchor
2 2 1 1 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
2 2 1 0 SCOP 101821 Aminopeptidase/glucanase lid domain
2 2 1 1 SCOP 101224 HAND domain of the nucleosome remodeling ATPase ISWI
2 2 2 1 SCOP 47587 Domain of poly(ADP-ribose) polymerase
2 2 2 0 SCOP 140125 Rabenosyn-5 Rab-binding domain-like
2 2 1 0 SCOP 90234 Zinc finger domain of DNA polymerase-alpha
2 2 1 0 SCOP 140482 MAST3 pre-PK domain-like
1 1 1 1 SCOP 52141 Uracil-DNA glycosylase-like
1 1 1 0 SCOP 54570 Ribosomal protein S19
1 1 1 1 SCOP 55282 RL5-like
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 1 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 0 SCOP 57840 Ribosomal protein L36
1 1 1 0 SCOP 74731 Ribosomal protein L20
1 1 1 1 SCOP 53597 Dihydrofolate reductase-like
1 1 1 0 SCOP 141091 L21p-like
1 1 1 0 SCOP 143800 L28p-like
1 1 1 1 SCOP 82549 DAK1/DegV-like
1 1 1 0 SCOP 75625 YebC-like
1 1 1 1 SCOP 50324 Inorganic pyrophosphatase
1 1 1 1 SCOP 52943 ATP synthase (F1-ATPase), gamma subunit
1 1 1 1 SCOP 55068 Peptide methionine sulfoxide reductase
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 0 SCOP 55194 Ribosome recycling factor, RRF
1 1 1 0 SCOP 54565 Ribosomal protein S16
1 1 1 1 SCOP 51283 dUTPase-like
1 1 1 1 SCOP 56770 HydA/Nqo6-like
1 1 1 0 SCOP 64518 Phase 1 flagellin
1 1 1 0 SCOP 54060 His-Me finger endonucleases
1 1 1 0 SCOP 55129 Ribosomal protein L30p/L7e
1 1 1 0 SCOP 54995 Ribosomal protein S6
1 1 1 1 SCOP 55387 Frataxin/Nqo15-like
1 1 1 0 SCOP 48140 Ribosomal protein L19 (L19e)
1 1 1 1 SCOP 50475 FMN-binding split barrel
1 1 1 0 SCOP 141678 MAL13P1.257-like
1 1 1 0 SCOP 69500 DTD-like
1 1 1 0 SCOP 103464 Oligosaccharyltransferase subunit ost4p
1 1 1 0 SCOP 81411 Mitochondrial cytochrome c oxidase subunit VIa
1 1 1 0 SCOP 81406 Mitochondrial cytochrome c oxidase subunit IV
1 1 1 0 SCOP 159468 AtpF-like
1 1 1 0 SCOP 81514 Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
1 1 1 0 SCOP 55144 LigT-like
1 1 1 1 SCOP 55248 PCD-like
1 1 1 0 SCOP 144210 Nop10-like SnoRNP
1 1 1 0 SCOP 89895 FYSH domain
1 1 1 1 SCOP 53774 Glutaminase/Asparaginase
1 1 1 1 SCOP 56752 D-aminoacid aminotransferase-like PLP-dependent enzymes
1 1 1 1 SCOP 69103 Arp2/3 complex 16 kDa subunit ARPC5
1 1 1 0 SCOP 81508 Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
1 1 1 0 SCOP 53639 AraD/HMP-PK domain-like
1 1 1 1 SCOP 55781 GAF domain-like
1 1 1 0 SCOP 161219 CHY zinc finger-like
1 1 1 0 SCOP 82282 Homocysteine S-methyltransferase
1 1 1 0 SCOP 81343 Fumarate reductase respiratory complex transmembrane subunits
1 1 1 0 SCOP 143870 PF0523-like
1 1 1 0 SCOP 53032 tRNA-intron endonuclease catalytic domain-like
1 1 1 1 SCOP 56529 FAH
1 1 1 0 SCOP 103111 Activator of Hsp90 ATPase, Aha1
1 1 1 0 SCOP 46988 Tubulin chaperone cofactor A
1 1 1 0 SCOP 143447 AMMECR1-like
1 1 1 0 SCOP 48690 Epsilon subunit of mitochondrial F1F0-ATP synthase
1 1 1 1 SCOP 52788 Phosphotyrosine protein phosphatases I
1 1 1 0 SCOP 81648 a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
1 1 1 1 SCOP 101546 ASF1-like
1 1 1 0 SCOP 101478 ADP-ribosylglycohydrolase
1 1 1 0 SCOP 143243 Nqo5-like
1 1 1 1 SCOP 51998 PFL-like glycyl radical enzymes
1 1 1 0 SCOP 141571 Pentapeptide repeat-like
1 1 1 1 SCOP 56349 DNA breaking-rejoining enzymes
1 1 1 0 SCOP 49503 Cupredoxins
1 1 1 0 SCOP 54447 ssDNA-binding transcriptional regulator domain
1 1 1 1 SCOP 89733 L-sulfolactate dehydrogenase-like
1 1 1 0 SCOP 117782 YbjQ-like
1 1 1 0 SCOP 55154 CYTH-like phosphatases
1 1 1 1 SCOP 52507 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
1 1 1 0 SCOP 54690 Molybdopterin synthase subunit MoaE
1 1 1 1 SCOP 54913 GlnB-like
1 1 1 0 SCOP 141000 Glu-tRNAGln amidotransferase C subunit
1 1 1 1 SCOP 53732 Aconitase iron-sulfur domain
1 1 1 1 SCOP 103365 Hypothetical protein PH1602
1 1 1 0 SCOP 158997 Trm112p-like
1 1 1 1 SCOP 82544 GckA/TtuD-like
1 1 1 0 SCOP 109910 YgfY-like
1 1 1 0 SCOP 51338 Composite domain of metallo-dependent hydrolases
1 1 1 1 SCOP 118215 Proton glutamate symport protein
1 1 1 0 SCOP 102588 LmbE-like
1 1 1 0 SCOP 160909 ATP12-like
1 1 1 0 SCOP 110069 ApaG-like
1 1 1 0 SCOP 48295 TrpR-like
1 1 1 0 SCOP 57802 Rubredoxin-like
1 1 1 0 SCOP 53182 Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
1 1 1 0 SCOP 101473 DhaL-like
1 1 1 0 SCOP 64076 MTH938-like
1 1 1 0 SCOP 48695 Multiheme cytochromes
1 1 1 0 SCOP 46950 Double-stranded DNA-binding domain
1 1 1 1 SCOP 50346 PRC-barrel domain
1 1 1 0 SCOP 111321 AF1104-like
1 1 1 0 SCOP 160350 Rnp2-like
1 1 1 0 SCOP 69819 MTH1598-like
1 1 1 1 SCOP 55287 RPB5-like RNA polymerase subunit
1 1 1 0 SCOP 143437 THUMP domain-like
1 1 1 1 SCOP 69695 SRP19
1 1 1 0 SCOP 53244 MurD-like peptide ligases, peptide-binding domain
1 1 1 1 SCOP 69336 Alpha subunit of glutamate synthase, C-terminal domain
1 1 1 0 SCOP 53706 Formate dehydrogenase/DMSO reductase, domains 1-3
1 1 1 0 SCOP 51690 Nicotinate/Quinolinate PRTase C-terminal domain-like
1 1 1 1 SCOP 51246 Rudiment single hybrid motif
1 1 1 1 SCOP 82114 Riboflavin kinase-like
1 1 1 0 SCOP 160443 SMR domain-like
1 1 1 0 SCOP 141255 YccV-like
1 1 1 1 SCOP 102645 CoaB-like
1 1 1 0 SCOP 49344 CBD9-like
1 1 1 0 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 0 SCOP 55234 Cyanase C-terminal domain
1 1 1 1 SCOP 142877 EndoU-like
1 1 1 0 SCOP 49468 VHL
1 1 1 0 SCOP 50965 Galactose oxidase, central domain
1 1 1 0 SCOP 118116 DNA mismatch repair protein MutL
1 1 1 0 SCOP 51344 Epsilon subunit of F1F0-ATP synthase N-terminal domain
1 1 1 0 SCOP 144206 NOB1 zinc finger-like
1 1 1 0 SCOP 49373 Invasin/intimin cell-adhesion fragments
1 1 1 0 SCOP 56037 PheT/TilS domain
1 1 1 0 SCOP 58014 Coiled-coil domain of nucleotide exchange factor GrpE
1 1 1 1 SCOP 63999 Thiamin pyrophosphokinase, catalytic domain
1 1 1 0 SCOP 142984 Nqo1 middle domain-like
1 1 1 0 SCOP 50621 Alanine racemase C-terminal domain-like
1 1 1 1 SCOP 54719 Fe,Mn superoxide dismutase (SOD), C-terminal domain
1 1 1 0 SCOP 101967 Adhesin YadA, collagen-binding domain
1 1 1 1 SCOP 110111 Ctag/Cox11
1 1 1 0 SCOP 49363 Purple acid phosphatase, N-terminal domain
1 1 1 1 SCOP 53623 MurD-like peptide ligases, catalytic domain
1 1 1 0 SCOP 117074 Hypothetical protein PA1324
1 1 1 0 SCOP 81891 Poly A polymerase C-terminal region-like
1 1 1 0 SCOP 48300 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
1 1 1 0 SCOP 47144 HSC20 (HSCB), C-terminal oligomerisation domain
1 1 1 0 SCOP 110836 Hypothetical protein SAV1430
1 1 1 1 SCOP 55637 Cell cycle regulatory proteins
1 1 1 0 SCOP 48431 Lipovitellin-phosvitin complex, superhelical domain
1 1 1 0 SCOP 69979 Eea1 homodimerisation domain
1 1 1 0 SCOP 52413 UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
1 1 1 0 SCOP 140490 Nqo1C-terminal domain-like
1 1 1 0 SCOP 55031 Bacterial exopeptidase dimerisation domain
1 1 1 0 SCOP 144284 Sec2 N-terminal region
1 1 1 1 SCOP 47446 Signal peptide-binding domain
1 1 1 1 SCOP 116742 eIF2alpha middle domain-like
1 1 1 0 SCOP 55048 Probable ACP-binding domain of malonyl-CoA ACP transacylase
1 1 1 0 SCOP 47928 N-terminal domain of the delta subunit of the F1F0-ATP synthase
1 1 1 0 SCOP 46596 Eukaryotic DNA topoisomerase I, dispensable insert domain
1 1 1 1 SCOP 89817 Mago nashi protein
1 1 1 0 SCOP 57492 Trefoil
1 1 1 1 SCOP 47798 Barrier-to-autointegration factor, BAF
1 1 1 0 SCOP 57256 Elafin-like
1 1 1 0 SCOP 50723 Core binding factor beta, CBF
1 1 1 0 SCOP 47353 Retrovirus capsid dimerization domain-like
1 1 1 1 SCOP 140984 PTPA-like
1 1 1 1 SCOP 69012 alpha-ketoacid dehydrogenase kinase, N-terminal domain
1 1 1 1 SCOP 55481 N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
1 1 1 1 SCOP 143724 PHP14-like
1 1 1 0 SCOP 81601 Protein serine/threonine phosphatase 2C, C-terminal domain
1 1 1 0 SCOP 161065 ATP synthase D chain-like
1 1 1 1 SCOP 47668 N-terminal domain of cbl (N-cbl)
1 1 1 0 SCOP 81730 beta-catenin-interacting protein ICAT
1 1 1 0 SCOP 47672 Transferrin receptor-like dimerisation domain
1 1 1 0 SCOP 81531 Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
1 1 1 0 SCOP 140106 Calcyclin-binding protein-like
1 1 1 1 SCOP 47216 Proteasome activator
1 1 1 0 SCOP 64602 F1 ATPase inhibitor, IF1, C-terminal domain
1 1 1 1 SCOP 63491 BAG domain
1 1 1 1 SCOP 142019 Nqo1 FMN-binding domain-like
1 1 1 0 SCOP 56487 SRCR-like
1 1 1 1 SCOP 109925 Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
1 1 1 0 SCOP 57262 Leech antihemostatic proteins
1 1 1 0 SCOP 81778 Crustacean CHH/MIH/GIH neurohormone
1 1 1 0 SCOP 54529 Mitochondrial glycoprotein MAM33-like
1 1 1 0 SCOP 57277 Granulin repeat
1 1 1 1 SCOP 64158 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
1 1 1 0 SCOP 110014 Her-1
1 1 1 0 SCOP 47380 ROP protein
1 1 1 1 SCOP 46609 Fe,Mn superoxide dismutase (SOD), N-terminal domain
1 1 1 0 SCOP 161060 ATP synthase B chain-like
1 1 1 1 SCOP 110993 eIF-2-alpha, C-terminal domain
1 1 1 1 SCOP 47040 Kix domain of CBP (creb binding protein)
1 1 1 0 SCOP 47912 Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
1 1 1 0 SCOP 102848 NSFL1 (p97 ATPase) cofactor p47, SEP domain
1 1 1 0 SCOP 48168 R1 subunit of ribonucleotide reductase, N-terminal domain
1 1 1 0 SCOP 160527 V-type ATPase subunit E-like
1 1 1 1 SCOP 82215 C-terminal autoproteolytic domain of nucleoporin nup98
1 1 1 0 SCOP 53036 Eukaryotic RPB5 N-terminal domain
1 1 1 0 SCOP 47157 Mitochondrial import receptor subunit Tom20
1 1 1 1 SCOP 50989 Clathrin heavy-chain terminal domain
1 1 1 1 SCOP 101391 Hsp90 co-chaperone CDC37
1 1 1 0 SCOP 109775 Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain
1 1 1 0 SCOP 47943 Retrovirus capsid protein, N-terminal core domain
1 1 1 0 SCOP 140427 VPS28 C-terminal domain-like
1 1 1 0 SCOP 159065 Dom34/Pelota N-terminal domain-like
1 1 1 0 SCOP 143503 PUG domain-like
1 1 1 1 SCOP 102031 AXH domain
1 1 1 0 SCOP 143575 GAS2 domain-like
1 1 1 0 SCOP 103637 CCHHC domain
1 1 1 1 SCOP 159042 Plus3-like
1 1 1 1 SCOP 88802 Pre-PUA domain
1 1 1 1 SCOP 56741 Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
1 1 1 0 SCOP 69687 Integrin beta tail domain
1 1 1 0 SCOP 63862 Thiamin pyrophosphokinase, substrate-binding domain
1 1 1 0 SCOP 55003 PAP/Archaeal CCA-adding enzyme, C-terminal domain
1 1 1 0 SCOP 102860 mRNA decapping enzyme DcpS N-terminal domain
1 1 1 0 SCOP 51064 Head domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 160651 FLJ32549 C-terminal domain-like
1 1 1 0 SCOP 144270 Eferin C-derminal domain-like
1 1 1 0 SCOP 160219 AMPKBI-like
1 1 1 0 SCOP 140586 Dcp2 domain-like
1 1 1 0 SCOP 81496 Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
1 1 1 0 SCOP 111479 Fzo-like conserved region
1 1 1 0 SCOP 47802 DNA polymerase beta, N-terminal domain-like
1 1 1 0 SCOP 46919 N-terminal Zn binding domain of HIV integrase
1 1 1 0 SCOP 50122 DNA-binding domain of retroviral integrase
1 1 1 0 SCOP 161256 RILP dimerisation region
1 1 1 0 SCOP 109728 Hypothetical protein AF0491, middle domain
1 1 1 0 SCOP 46915 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
1 1 1 0 SCOP 101238 XPC-binding domain
1 1 1 0 SCOP 57770 Methionyl-tRNA synthetase (MetRS), Zn-domain
1 1 1 0 SCOP 109805 Phenylalanine zipper
1 1 1 0 SCOP 101283 GRIP domain
1 1 1 0 SCOP 103652 G protein-binding domain
1 1 1 1 SCOP 109880 A middle domain of Talin 1
1 1 1 0 SCOP 158548 FLJ32549 domain-like

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The following superfamilies have one or more weak hits:

SCOP superfamily Gametocyte protein Pfg27
SCOP superfamily Cobalamin adenosyltransferase-like
SCOP superfamily GIY-YIG endonuclease
SCOP superfamily BRCA2 tower domain
SCOP superfamily F1F0 ATP synthase subunit B, membrane domain
SCOP superfamily ABC transporter involved in vitamin B12 uptake, BtuC
SCOP superfamily Rad50 coiled-coil Zn hook
SCOP superfamily Chemotaxis phosphatase CheZ
SCOP superfamily Mitotic arrest deficient-like 1, Mad1
SCOP superfamily YhbC-like, N-terminal domain
SCOP superfamily Membrane penetration protein mu1
SCOP superfamily Outer surface protein C (OspC)
SCOP superfamily Apolipoprotein A-I
SCOP superfamily Methyl-accepting chemotaxis protein (MCP) signaling domain
SCOP superfamily Colicin Ia, N-terminal domain
SCOP superfamily N-terminal coiled coil domain from apc
SCOP superfamily Fibritin
SCOP superfamily Fibrinogen coiled-coil and central regions
SCOP superfamily TNF receptor-like
SCOP superfamily Perfringolysin
SCOP superfamily Porins
SCOP superfamily Ornithine decarboxylase C-terminal domain
SCOP superfamily Lysozyme-like
SCOP superfamily Beta-D-glucan exohydrolase, C-terminal domain
SCOP superfamily delta-Endotoxin (insectocide), middle domain
SCOP superfamily Myosin S1 fragment, N-terminal domain
SCOP superfamily Periplasmic chaperone C-domain
SCOP superfamily Cna protein B-type domain
SCOP superfamily Carbohydrate-binding domain
SCOP superfamily Transcription factor STAT-4 N-domain
SCOP superfamily FliG
SCOP superfamily Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
SCOP superfamily 4-helical cytokines
SCOP superfamily Cytochromes
SCOP superfamily Apolipoprotein
SCOP superfamily Epsilon subunit of F1F0-ATP synthase C-terminal domain
SCOP superfamily PspA lactotransferrin-binding region
SCOP superfamily MetI-like
SCOP superfamily MAPEG domain-like
SCOP superfamily Taf5 N-terminal domain-like
SCOP superfamily Lipase chaperone-like
SCOP superfamily PMT central region-like
SCOP superfamily PSPTO4464-like
SCOP superfamily YheA/YmcA-like
SCOP superfamily Orange domain-like
SCOP superfamily Vanabin-like
SCOP superfamily FdhE-like
SCOP superfamily SipA N-terminal domain-like
SCOP superfamily IpaD-like
SCOP superfamily Hyaluronidase post-catalytic domain-like
SCOP superfamily MukF C-terminal domain-like
SCOP superfamily MW0975(SA0943)-like
SCOP superfamily HSP33 redox switch-like
SCOP superfamily YehU-like
SCOP superfamily Accessory protein X4 (ORF8, ORF7a)
SCOP superfamily XseB-like
SCOP superfamily Coronavirus S2 glycoprotein
SCOP superfamily Geminin coiled-coil domain
SCOP superfamily OmpH-like
SCOP superfamily Hypothetical protein YhaI
SCOP superfamily Autotransporter
SCOP superfamily YceI-like
SCOP superfamily Hypothetical protein YgiW

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.