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  Home > Genomes > Superfamily assignments for Streptomyces avermitilis MA-4680


Streptomyces avermitilis MA-4680 superfamily assignments

Taxonomy
Taxonomy browser entry

Bacteria; Terrabacteria group; Actinobacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces; Streptomyces avermitilis; Streptomyces avermitilis MA-4680 = NBRC 14893

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Fasta format sequences
Domain assignments

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Assignment statistics

Sequences: 7676 total
5230 (68 %) with assignment
341 average length
61 % amino acid coverage
Domains: 7727 total
774 unique superfamilies
574 unique families
306 average length
10 average superfamily size
90 % formed by duplication
Domain combinations: 616 domain pairs
1605 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies
449 400 95 10 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
356 279 62 8 SCOP 51735 NAD(P)-binding Rossmann-fold domains
250 248 32 1 SCOP 46785 "Winged helix" DNA-binding domain
180 160 20 1 SCOP 46689 Homeodomain-like
138 138 34 1 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
122 65 23 2 SCOP 53901 Thiolase-like
117 114 11 1 SCOP 53850 Periplasmic binding protein-like II
115 115 16 9 SCOP 53474 alpha/beta-Hydrolases
113 110 10 0 SCOP 103473 MFS general substrate transporter
111 109 9 1 SCOP 161098 MetI-like
104 93 21 3 SCOP 51905 FAD/NAD(P)-binding domain
99 99 12 4 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
95 57 38 0 SCOP 47336 ACP-like
92 87 12 1 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
89 89 10 0 SCOP 47413 lambda repressor-like DNA-binding domains
85 85 5 1 SCOP 48498 Tetracyclin repressor-like, C-terminal domain
83 83 16 1 SCOP 52172 CheY-like
81 80 39 10 SCOP 51445 (Trans)glycosidases
77 53 29 0 SCOP 48452 TPR-like
77 64 8 0 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
76 76 18 0 SCOP 46894 C-terminal effector domain of the bipartite response regulators
71 69 9 5 SCOP 53383 PLP-dependent transferases
66 59 37 1 SCOP 55781 GAF domain-like
63 61 17 2 SCOP 56112 Protein kinase-like (PK-like)
63 44 11 4 SCOP 53067 Actin-like ATPase domain
58 58 6 1 SCOP 88946 Sigma2 domain of RNA polymerase sigma factors
56 25 21 1 SCOP 52151 FabD/lysophospholipase-like
55 24 20 0 SCOP 55048 Probable ACP-binding domain of malonyl-CoA ACP transacylase
54 51 11 2 SCOP 50129 GroES-like
53 43 7 4 SCOP 54593 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
53 41 30 0 SCOP 55785 PYP-like sensor domain (PAS domain)
51 47 14 1 SCOP 56801 Acetyl-CoA synthetase-like
51 51 4 1 SCOP 53822 Periplasmic binding protein-like I
45 27 10 6 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
45 36 32 2 SCOP 49785 Galactose-binding domain-like
45 43 7 2 SCOP 54909 Dimeric alpha+beta barrel
44 43 9 2 SCOP 53448 Nucleotide-diphospho-sugar transferases
44 44 29 1 SCOP 81606 PP2C-like
43 43 14 3 SCOP 52317 Class I glutamine amidotransferase-like
43 38 21 2 SCOP 50249 Nucleic acid-binding proteins
42 22 17 1 SCOP 52777 CoA-dependent acyltransferases
41 41 9 3 SCOP 56784 HAD-like
40 34 7 4 SCOP 52096 ClpP/crotonase
39 38 13 3 SCOP 53098 Ribonuclease H-like
39 22 6 0 SCOP 103481 Multidrug resistance efflux transporter EmrE
38 38 11 2 SCOP 56601 beta-lactamase/transpeptidase-like
38 37 10 0 SCOP 46955 Putative DNA-binding domain
38 37 7 1 SCOP 56645 Acyl-CoA dehydrogenase NM domain-like
37 36 6 1 SCOP 47203 Acyl-CoA dehydrogenase C-terminal domain-like
36 36 4 1 SCOP 48264 Cytochrome P450
33 33 5 5 SCOP 51182 RmlC-like cupins
33 33 3 2 SCOP 51679 Bacterial luciferase-like
32 32 10 4 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
31 31 8 9 SCOP 51556 Metallo-dependent hydrolases
31 27 6 4 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
30 30 10 1 SCOP 52833 Thioredoxin-like
30 30 4 3 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
30 18 16 1 SCOP 81296 E set domains
30 30 10 0 SCOP 47384 Homodimeric domain of signal transducing histidine kinase
29 29 5 1 SCOP 55811 Nudix
29 24 5 2 SCOP 54637 Thioesterase/thiol ester dehydrase-isomerase
27 25 13 3 SCOP 52402 Adenine nucleotide alpha hydrolases-like
27 27 2 2 SCOP 53720 ALDH-like
27 27 7 2 SCOP 54427 NTF2-like
26 24 5 1 SCOP 90123 ABC transporter transmembrane region
25 25 4 0 SCOP 56281 Metallo-hydrolase/oxidoreductase
25 25 5 2 SCOP 50475 FMN-binding split barrel
25 24 6 1 SCOP 55961 Bet v1-like
25 25 4 3 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
24 23 15 3 SCOP 56059 Glutathione synthetase ATP-binding domain-like
24 22 16 7 SCOP 54211 Ribosomal protein S5 domain 2-like
24 24 13 3 SCOP 53955 Lysozyme-like
23 23 1 1 SCOP 51430 NAD(P)-linked oxidoreductase
23 23 9 2 SCOP 48208 Six-hairpin glycosidases
23 23 2 1 SCOP 48008 GntR ligand-binding domain-like
22 22 6 6 SCOP 51569 Aldolase
22 22 6 0 SCOP 109854 DinB/YfiT-like putative metalloenzymes
22 22 15 0 SCOP 51011 Glycosyl hydrolase domain
21 21 7 0 SCOP 56300 Metallo-dependent phosphatases
21 21 7 1 SCOP 50494 Trypsin-like serine proteases
21 12 7 1 SCOP 82866 Multidrug efflux transporter AcrB transmembrane domain
19 19 8 1 SCOP 54001 Cysteine proteinases
19 19 4 0 SCOP 52091 SpoIIaa-like
19 16 8 0 SCOP 69318 Integrin alpha N-terminal domain
18 18 5 5 SCOP 100950 NagB/RpiA/CoA transferase-like
18 18 5 0 SCOP 52266 SGNH hydrolase
18 18 8 1 SCOP 54631 CBS-domain pair
18 15 6 1 SCOP 51338 Composite domain of metallo-dependent hydrolases
17 16 12 3 SCOP 52374 Nucleotidylyl transferase
17 16 4 2 SCOP 102114 Radical SAM enzymes
17 17 7 3 SCOP 53187 Zn-dependent exopeptidases
17 14 7 3 SCOP 51126 Pectin lyase-like
17 17 3 2 SCOP 51197 Clavaminate synthase-like
17 17 5 2 SCOP 88713 Glycoside hydrolase/deacetylase
17 17 8 1 SCOP 56176 FAD-binding/transporter-associated domain-like
16 16 6 4 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
16 16 4 0 SCOP 56349 DNA breaking-rejoining enzymes
16 16 5 0 SCOP 158472 HAMP domain-like
15 15 2 2 SCOP 53613 Ribokinase-like
15 15 5 1 SCOP 54862 4Fe-4S ferredoxins
15 15 2 1 SCOP 53254 Phosphoglycerate mutase-like
15 14 4 2 SCOP 48576 Terpenoid synthases
15 14 8 2 SCOP 50447 Translation proteins
15 15 3 0 SCOP 103196 Roadblock/LC7 domain
15 15 5 1 SCOP 52743 Subtilisin-like
15 14 9 0 SCOP 63380 Riboflavin synthase domain-like
14 14 10 2 SCOP 55681 Class II aaRS and biotin synthetases
14 5 3 0 SCOP 53738 Phosphoglucomutase, first 3 domains
13 13 5 2 SCOP 53271 PRTase-like
13 13 2 2 SCOP 47240 Ferritin-like
13 13 3 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
13 13 7 0 SCOP 54292 2Fe-2S ferredoxin-like
13 13 5 5 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
13 12 10 2 SCOP 49899 Concanavalin A-like lectins/glucanases
13 11 10 0 SCOP 55021 ACT-like
13 13 2 1 SCOP 64288 Chorismate lyase-like
13 7 3 1 SCOP 54980 EF-G C-terminal domain-like
13 13 4 3 SCOP 54373 FAD-linked reductases, C-terminal domain
12 12 3 3 SCOP 51658 Xylose isomerase-like
12 8 6 2 SCOP 51161 Trimeric LpxA-like enzymes
12 12 2 0 SCOP 48317 Acid phosphatase/Vanadium-dependent haloperoxidase
12 12 3 0 SCOP 101478 ADP-ribosylglycohydrolase
12 12 4 4 SCOP 52467 DHS-like NAD/FAD-binding domain
12 10 5 0 SCOP 49879 SMAD/FHA domain
12 12 3 0 SCOP 141523 L,D-transpeptidase catalytic domain-like
12 12 8 1 SCOP 50370 Ricin B-like lectins
12 3 3 0 SCOP 58104 Methyl-accepting chemotaxis protein (MCP) signaling domain
12 12 11 2 SCOP 49384 Carbohydrate-binding domain
12 6 5 1 SCOP 49303 beta-Galactosidase/glucuronidase domain
11 11 4 3 SCOP 53697 SIS domain
11 11 3 1 SCOP 111331 NAD kinase/diacylglycerol kinase-like
11 11 4 0 SCOP 52218 Flavoproteins
11 11 5 1 SCOP 51395 FMN-linked oxidoreductases
11 11 7 4 SCOP 74650 Galactose mutarotase-like
11 11 5 0 SCOP 50022 ISP domain
11 10 4 0 SCOP 50331 MOP-like
11 11 5 0 SCOP 55846 N-acetylmuramoyl-L-alanine amidase-like
11 11 2 1 SCOP 55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
11 11 7 1 SCOP 52343 Ferredoxin reductase-like, C-terminal NADP-linked domain
11 11 5 2 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
11 11 4 2 SCOP 52922 TK C-terminal domain-like
11 11 3 0 SCOP 63737 Leukotriene A4 hydrolase N-terminal domain
10 7 5 0 SCOP 56214 4'-phosphopantetheinyl transferase
10 10 6 1 SCOP 51419 PLP-binding barrel
10 10 5 1 SCOP 109604 HD-domain/PDEase-like
10 10 4 3 SCOP 55931 Glutamine synthetase/guanido kinase
10 10 3 2 SCOP 69118 AhpD-like
10 10 7 0 SCOP 55073 Nucleotide cyclase
10 9 6 1 SCOP 51230 Single hybrid motif
10 10 7 0 SCOP 53300 vWA-like
10 8 2 0 SCOP 50998 Quinoprotein alcohol dehydrogenase-like
10 6 5 1 SCOP 56024 Phospholipase D/nuclease
10 9 7 1 SCOP 49265 Fibronectin type III
10 9 6 1 SCOP 52440 PreATP-grasp domain
10 7 5 1 SCOP 52210 Succinyl-CoA synthetase domains
9 9 3 2 SCOP 53927 Cytidine deaminase-like
9 9 6 1 SCOP 53790 Tetrapyrrole methylase
9 9 5 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
9 9 3 1 SCOP 51695 PLC-like phosphodiesterases
9 6 4 1 SCOP 52821 Rhodanese/Cell cycle control phosphatase
9 9 4 0 SCOP 51261 Duplicated hybrid motif
9 8 3 1 SCOP 51412 Inosine monophosphate dehydrogenase (IMPDH)
9 6 3 3 SCOP 54506 Diaminopimelate epimerase-like
9 9 4 0 SCOP 56317 Carbon-nitrogen hydrolase
9 9 4 3 SCOP 52283 Formate/glycerate dehydrogenase catalytic domain-like
9 6 5 0 SCOP 49503 Cupredoxins
9 8 6 1 SCOP 81301 Nucleotidyltransferase
9 9 2 0 SCOP 63817 Sortase
9 6 5 0 SCOP 75005 Arabinanase/levansucrase/invertase
9 9 3 0 SCOP 50346 PRC-barrel domain
8 7 3 0 SCOP 54197 HIT-like
8 8 4 1 SCOP 55920 Creatinase/aminopeptidase
8 8 1 0 SCOP 69593 Glycerol-3-phosphate (1)-acyltransferase
8 8 4 1 SCOP 48150 DNA-glycosylase
8 8 3 1 SCOP 56219 DNase I-like
8 7 7 1 SCOP 47781 RuvA domain 2-like
8 7 4 0 SCOP 160631 SMI1/KNR4-like
8 8 6 0 SCOP 50156 PDZ domain-like
8 8 2 0 SCOP 81923 Double Clp-N motif
8 6 5 1 SCOP 51971 Nucleotide-binding domain
7 7 1 4 SCOP 51366 Ribulose-phoshate binding barrel
7 7 5 1 SCOP 52980 Restriction endonuclease-like
7 7 2 2 SCOP 48557 L-aspartase-like
7 7 2 0 SCOP 55298 YjgF-like
7 6 3 2 SCOP 50891 Cyclophilin-like
7 7 3 1 SCOP 56634 Heme-dependent catalase-like
7 7 5 0 SCOP 55718 SCP-like
7 7 2 1 SCOP 49482 Aromatic compound dioxygenase
7 7 4 0 SCOP 51206 cAMP-binding domain-like
7 6 2 1 SCOP 89796 CoA-transferase family III (CaiB/BaiF)
7 7 3 1 SCOP 101386 all-alpha NTP pyrophosphatases
7 7 2 0 SCOP 51219 TRAP-like
7 7 3 0 SCOP 82171 DPP6 N-terminal domain-like
7 7 4 1 SCOP 46548 alpha-helical ferredoxin
7 7 7 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
7 6 6 0 SCOP 49464 Carboxypeptidase regulatory domain-like
7 4 4 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
6 6 2 1 SCOP 46946 S13-like H2TH domain
6 6 3 0 SCOP 53597 Dihydrofolate reductase-like
6 6 6 1 SCOP 55174 Alpha-L RNA-binding motif
6 6 5 2 SCOP 75217 alpha/beta knot
6 4 3 1 SCOP 110296 Oligoxyloglucan reducing end-specific cellobiohydrolase
6 4 2 1 SCOP 48239 Terpenoid cyclases/Protein prenyltransferases
6 6 4 0 SCOP 51306 LexA/Signal peptidase
6 2 2 0 SCOP 81901 HCP-like
6 6 4 0 SCOP 89550 PHP domain-like
6 6 4 0 SCOP 50800 PK beta-barrel domain-like
6 6 6 0 SCOP 88697 PUA domain-like
6 3 1 1 SCOP 63411 LuxS/MPP-like metallohydrolase
6 6 3 1 SCOP 51703 Cobalamin (vitamin B12)-dependent enzymes
6 6 2 0 SCOP 160904 Jann2411-like
6 6 6 1 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
6 5 3 1 SCOP 56003 Molybdenum cofactor-binding domain
6 2 1 0 SCOP 55979 DNA clamp
6 6 5 1 SCOP 53706 Formate dehydrogenase/DMSO reductase, domains 1-3
6 6 3 0 SCOP 51246 Rudiment single hybrid motif
6 6 3 0 SCOP 89372 Fucose-specific lectin
6 6 3 2 SCOP 50621 Alanine racemase C-terminal domain-like
6 6 4 2 SCOP 53623 MurD-like peptide ligases, catalytic domain
6 6 2 0 SCOP 117892 Band 7/SPFH domain
6 6 1 0 SCOP 55031 Bacterial exopeptidase dimerisation domain
6 6 4 0 SCOP 101173 Docking domain B of the erythromycin polyketide synthase (DEBS)
5 5 1 1 SCOP 53167 Purine and uridine phosphorylases
5 5 2 1 SCOP 75304 Amidase signature (AS) enzymes
5 5 4 2 SCOP 50104 Translation proteins SH3-like domain
5 5 5 3 SCOP 55120 Pseudouridine synthase
5 5 1 0 SCOP 143800 L28p-like
5 5 1 2 SCOP 56655 Carbohydrate phosphatase
5 5 1 1 SCOP 81345 ABC transporter involved in vitamin B12 uptake, BtuC
5 5 2 0 SCOP 54060 His-Me finger endonucleases
5 4 3 0 SCOP 48371 ARM repeat
5 5 3 0 SCOP 63829 Calcium-dependent phosphotriesterase
5 5 4 2 SCOP 56672 DNA/RNA polymerases
5 4 4 1 SCOP 54534 FKBP-like
5 5 3 0 SCOP 53649 Alkaline phosphatase-like
5 5 1 1 SCOP 56752 D-aminoacid aminotransferase-like PLP-dependent enzymes
5 4 2 2 SCOP 55620 Tetrahydrobiopterin biosynthesis enzymes-like
5 5 4 0 SCOP 144091 Rhomboid-like
5 5 4 0 SCOP 52954 Class II aaRS ABD-related
5 5 3 1 SCOP 102405 MCP/YpsA-like
5 5 3 1 SCOP 51717 Dihydropteroate synthetase-like
5 5 3 0 SCOP 141868 EAL domain-like
5 5 1 0 SCOP 47598 Ribbon-helix-helix
5 5 2 0 SCOP 56524 Oxidoreductase molybdopterin-binding domain
5 5 4 1 SCOP 50692 ADC-like
5 5 2 1 SCOP 102588 LmbE-like
5 4 4 1 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
5 5 4 1 SCOP 52242 Cobalamin (vitamin B12)-binding domain
5 5 2 2 SCOP 51604 Enolase C-terminal domain-like
5 5 1 0 SCOP 140453 EsxAB dimer-like
5 5 3 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
5 5 3 0 SCOP 53244 MurD-like peptide ligases, peptide-binding domain
5 5 1 1 SCOP 143865 CorA soluble domain-like
5 4 3 1 SCOP 56014 Nitrite and sulphite reductase 4Fe-4S domain-like
5 5 3 0 SCOP 103190 Sensory domain-like
5 5 4 0 SCOP 47090 PGBD-like
5 5 2 1 SCOP 54826 Enolase N-terminal domain-like
5 4 2 1 SCOP 56042 PurM C-terminal domain-like
5 5 3 1 SCOP 56425 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
5 5 3 1 SCOP 46977 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
5 5 2 0 SCOP 160964 MalF N-terminal region-like
5 4 2 1 SCOP 55326 PurM N-terminal domain-like
5 5 1 0 SCOP 144083 Magnesium transport protein CorA, transmembrane region
5 5 2 0 SCOP 47741 CO dehydrogenase ISP C-domain like
5 5 3 0 SCOP 55957 Phosphoglucomutase, C-terminal domain
5 5 1 1 SCOP 54368 Glutamine synthetase, N-terminal domain
4 4 1 2 SCOP 52141 Uracil-DNA glycosylase-like
4 4 1 1 SCOP 82784 OsmC-like
4 4 3 2 SCOP 53633 Carbamate kinase-like
4 4 1 0 SCOP 54285 MoaD/ThiS
4 4 3 1 SCOP 142695 RibA-like
4 4 3 0 SCOP 55315 L30e-like
4 4 3 0 SCOP 55469 FMN-dependent nitroreductase-like
4 4 1 1 SCOP 48256 Citrate synthase
4 4 2 1 SCOP 48613 Heme oxygenase-like
4 4 2 0 SCOP 52799 (Phosphotyrosine protein) phosphatases II
4 3 2 2 SCOP 51726 UROD/MetE-like
4 4 4 1 SCOP 88723 PIN domain-like
4 4 4 1 SCOP 53328 Formyltransferase
4 4 3 1 SCOP 56322 ADC synthase
4 4 1 1 SCOP 52499 Isochorismatase-like hydrolases
4 4 2 1 SCOP 53639 AraD/HMP-PK domain-like
4 4 2 1 SCOP 53056 beta-carbonic anhydrase, cab
4 4 3 1 SCOP 56529 FAH
4 4 1 3 SCOP 55909 Pentein
4 4 1 1 SCOP 53800 Chelatase
4 4 4 1 SCOP 46458 Globin-like
4 4 4 0 SCOP 49478 Cna protein B-type domain
4 4 3 0 SCOP 141571 Pentapeptide repeat-like
4 4 3 1 SCOP 52016 LeuD/IlvD-like
4 4 1 1 SCOP 53807 "Helical backbone" metal receptor
4 4 2 0 SCOP 46767 Methylated DNA-protein cysteine methyltransferase, C-terminal domain
4 4 3 0 SCOP 50118 Cell growth inhibitor/plasmid maintenance toxic component
4 4 2 0 SCOP 161111 Cation efflux protein transmembrane domain-like
4 4 2 1 SCOP 54913 GlnB-like
4 4 2 0 SCOP 110087 DR1885-like metal-binding protein
4 4 2 1 SCOP 55826 YbaK/ProRS associated domain
4 4 2 1 SCOP 101874 YceI-like
4 4 3 0 SCOP 50974 Nitrous oxide reductase, N-terminal domain
4 3 3 0 SCOP 49452 Starch-binding domain-like
4 4 4 0 SCOP 46565 Chaperone J-domain
4 4 2 0 SCOP 160582 MbtH-like
4 4 2 0 SCOP 46589 tRNA-binding arm
4 4 3 0 SCOP 55103 FAD-linked oxidases, C-terminal domain
4 4 4 0 SCOP 101898 NHL repeat
4 4 4 1 SCOP 48230 Chondroitin AC/alginate lyase
4 4 2 0 SCOP 54106 LysM domain
4 4 3 1 SCOP 56719 Type II DNA topoisomerase
4 4 2 0 SCOP 81665 Calcium ATPase, transmembrane domain M
4 4 2 0 SCOP 116726 TrkA C-terminal domain-like
4 4 1 0 SCOP 51215 Regulatory protein AraC
4 4 2 0 SCOP 51294 Hedgehog/intein (Hint) domain
4 4 4 1 SCOP 51989 Glycosyl hydrolases family 6, cellulases
4 4 2 0 SCOP 54665 CO dehydrogenase molybdoprotein N-domain-like
4 4 4 1 SCOP 52279 Beta-D-glucan exohydrolase, C-terminal domain
4 4 1 0 SCOP 55447 CO dehydrogenase flavoprotein C-terminal domain-like
4 4 2 0 SCOP 160240 Cation efflux protein cytoplasmic domain-like
4 4 2 2 SCOP 56327 LDH C-terminal domain-like
4 4 1 0 SCOP 81624 N-terminal domain of MutM-like DNA repair proteins
4 4 3 1 SCOP 55545 beta-N-acetylhexosaminidase-like domain
4 4 2 0 SCOP 81653 Calcium ATPase, transduction domain A
3 3 1 1 SCOP 81338 Aquaporin-like
3 3 1 0 SCOP 57829 Zn-binding ribosomal proteins
3 3 1 1 SCOP 56420 Peptide deformylase
3 3 1 1 SCOP 53784 Phosphofructokinase
3 3 1 1 SCOP 75620 Release factor
3 3 3 3 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
3 3 3 1 SCOP 55821 YrdC/RibB
3 3 2 2 SCOP 56770 HydA/Nqo6-like
3 3 1 1 SCOP 55205 EPT/RTPC-like
3 3 1 0 SCOP 49764 HSP20-like chaperones
3 3 2 0 SCOP 50182 Sm-like ribonucleoproteins
3 3 3 1 SCOP 52949 Macro domain-like
3 3 2 0 SCOP 54897 Protease propeptides/inhibitors
3 3 3 0 SCOP 47819 HRDC-like
3 3 1 0 SCOP 81343 Fumarate reductase respiratory complex transmembrane subunits
3 3 2 0 SCOP 55008 HMA, heavy metal-associated domain
3 3 3 0 SCOP 56399 ADP-ribosylation
3 3 1 2 SCOP 52768 Arginase/deacetylase
3 3 2 0 SCOP 52788 Phosphotyrosine protein phosphatases I
3 3 3 0 SCOP 81324 Voltage-gated potassium channels
3 3 3 0 SCOP 117916 Fe-S cluster assembly (FSCA) domain-like
3 3 2 1 SCOP 52507 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
3 3 2 2 SCOP 56762 HydB/Nqo4-like
3 3 3 0 SCOP 53218 Molybdenum cofactor biosynthesis proteins
3 3 3 0 SCOP 54736 ClpS-like
3 3 1 0 SCOP 69047 Hypothetical protein YjbJ
3 3 2 0 SCOP 89392 Prokaryotic lipoproteins and lipoprotein localization factors
3 3 2 1 SCOP 103025 Folate-binding domain
3 3 1 0 SCOP 53041 Resolvase-like
3 3 3 1 SCOP 50486 FMT C-terminal domain-like
3 2 2 0 SCOP 81593 Nucleotidyltransferase substrate binding subunit/domain
3 3 2 1 SCOP 50939 Sialidases
3 3 2 0 SCOP 53092 Creatinase/prolidase N-terminal domain
3 2 2 1 SCOP 48592 GroEL equatorial domain-like
3 2 2 0 SCOP 52200 Toll/Interleukin receptor TIR domain
3 3 1 1 SCOP 55399 Subtilisin inhibitor
3 3 1 0 SCOP 82185 Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
3 3 2 1 SCOP 48019 post-AAA+ oligomerization domain-like
3 3 3 0 SCOP 52009 Phosphohistidine domain
3 2 2 0 SCOP 50965 Galactose oxidase, central domain
3 3 3 0 SCOP 81995 beta-sandwich domain of Sec23/24
3 1 1 1 SCOP 55973 S-adenosylmethionine synthetase
3 3 2 0 SCOP 48056 Di-copper centre-containing domain
3 3 1 1 SCOP 53671 Aspartate/ornithine carbamoyltransferase
3 3 3 0 SCOP 142984 Nqo1 middle domain-like
3 3 2 0 SCOP 74853 Lamin A/C globular tail domain
3 3 1 0 SCOP 55060 GHMP Kinase, C-terminal domain
3 3 1 0 SCOP 53155 Methylated DNA-protein cysteine methyltransferase domain
3 3 1 0 SCOP 52413 UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
3 2 2 1 SCOP 55124 Nitrite/Sulfite reductase N-terminal domain-like
3 3 3 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
3 3 3 0 SCOP 140490 Nqo1C-terminal domain-like
3 1 1 0 SCOP 82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
3 3 2 1 SCOP 81271 TGS-like
3 3 3 0 SCOP 110221 AbfB domain
3 3 3 1 SCOP 142019 Nqo1 FMN-binding domain-like
3 2 2 1 SCOP 55666 Ribonuclease PH domain 2-like
3 3 2 0 SCOP 47005 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
3 3 2 1 SCOP 101790 Aminomethyltransferase beta-barrel domain
3 2 2 0 SCOP 54184 Penicillin-binding protein 2x (pbp-2x), c-terminal domain
2 2 2 0 SCOP 48013 NusB-like
2 2 1 0 SCOP 46911 Ribosomal protein S18
2 2 1 1 SCOP 53137 Translational machinery components
2 2 1 2 SCOP 82549 DAK1/DegV-like
2 2 2 0 SCOP 47729 IHF-like DNA-binding proteins
2 2 2 0 SCOP 109998 Triger factor/SurA peptide-binding domain-like
2 2 1 1 SCOP 89623 Ribose/Galactose isomerase RpiB/AlsB
2 2 1 1 SCOP 109755 PhoU-like
2 2 2 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
2 2 1 1 SCOP 51730 FAD-linked oxidoreductase
2 2 2 0 SCOP 111283 Putative modulator of DNA gyrase, PmbA/TldD
2 2 1 1 SCOP 51283 dUTPase-like
2 2 1 1 SCOP 64005 Undecaprenyl diphosphate synthase
2 2 1 1 SCOP 56796 Dehydroquinate synthase-like
2 2 1 0 SCOP 89957 MTH1187/YkoF-like
2 2 2 1 SCOP 47113 Histone-fold
2 2 1 0 SCOP 47473 EF-hand
2 2 1 0 SCOP 143744 GlcG-like
2 1 1 0 SCOP 50978 WD40 repeat-like
2 1 1 0 SCOP 46626 Cytochrome c
2 2 2 0 SCOP 48403 Ankyrin repeat
2 2 1 0 SCOP 55144 LigT-like
2 2 1 1 SCOP 69572 Activating enzymes of the ubiquitin-like proteins
2 2 1 0 SCOP 51645 Malate synthase G
2 2 1 2 SCOP 52972 ITPase-like
2 2 1 1 SCOP 140959 Indolic compounds 2,3-dioxygenase-like
2 2 2 0 SCOP 110849 ParB/Sulfiredoxin
2 2 2 1 SCOP 82282 Homocysteine S-methyltransferase
2 2 1 0 SCOP 55257 RBP11-like subunits of RNA polymerase
2 2 2 0 SCOP 69618 HemD-like
2 2 1 1 SCOP 81442 Cytochrome c oxidase subunit I-like
2 2 1 0 SCOP 101960 Stabilizer of iron transporter SufD
2 2 2 1 SCOP 81342 Transmembrane di-heme cytochromes
2 2 2 0 SCOP 143243 Nqo5-like
2 2 1 0 SCOP 143422 Transposase IS200-like
2 2 2 1 SCOP 53795 PEP carboxykinase-like
2 2 2 1 SCOP 51998 PFL-like glycyl radical enzymes
2 2 2 0 SCOP 102712 JAB1/MPN domain
2 2 1 0 SCOP 143120 YefM-like
2 2 1 1 SCOP 111352 Ammonium transporter
2 2 2 0 SCOP 55331 Tautomerase/MIF
2 2 1 1 SCOP 56266 DmpA/ArgJ-like
2 2 1 0 SCOP 55166 Hedgehog/DD-peptidase
2 2 2 0 SCOP 158682 TerB-like
2 2 1 0 SCOP 110857 Gamma-glutamyl cyclotransferase-like
2 2 2 0 SCOP 55154 CYTH-like phosphatases
2 2 1 1 SCOP 110710 TTHA0583/YokD-like
2 2 1 1 SCOP 110399 ThiG-like
2 2 2 1 SCOP 159501 EreA/ChaN-like
2 2 2 1 SCOP 53732 Aconitase iron-sulfur domain
2 2 2 0 SCOP 54518 Tubby C-terminal domain-like
2 2 2 1 SCOP 54111 Urease, gamma-subunit
2 2 2 1 SCOP 51278 Urease, beta-subunit
2 2 2 1 SCOP 52733 Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
2 2 1 0 SCOP 82689 Mechanosensitive channel protein MscS (YggB), C-terminal domain
2 2 2 0 SCOP 54975 Acylphosphatase/BLUF domain-like
2 2 1 0 SCOP 158997 Trm112p-like
2 2 2 0 SCOP 51004 C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
2 2 2 0 SCOP 89095 GatB/YqeY motif
2 2 1 0 SCOP 48600 Chorismate mutase II
2 2 1 0 SCOP 158694 UraD-Like
2 2 1 0 SCOP 56747 Prim-pol domain
2 2 1 0 SCOP 159234 FomD-like
2 2 2 0 SCOP 55604 Glucose permease domain IIB
2 2 2 1 SCOP 52335 Methylglyoxal synthase-like
2 2 1 0 SCOP 143631 ApbE-like
2 2 1 0 SCOP 69322 Tricorn protease domain 2
2 2 1 0 SCOP 50814 Lipocalins
2 2 2 1 SCOP 142338 CofD-like
2 2 2 1 SCOP 101473 DhaL-like
2 2 2 0 SCOP 75011 3-carboxy-cis,cis-mucoante lactonizing enzyme
2 2 2 1 SCOP 159659 Cgl1923-like
2 1 1 0 SCOP 89963 YajQ-like
2 2 2 1 SCOP 142906 YjbR-like
2 2 1 1 SCOP 160104 Acetoacetate decarboxylase-like
2 2 2 0 SCOP 100939 SPOC domain-like
2 2 2 0 SCOP 109709 KorB DNA-binding domain-like
2 2 1 1 SCOP 53933 Microbial ribonucleases
2 2 1 0 SCOP 102198 Putative cyclase
2 2 1 1 SCOP 63992 Dipeptide transport protein
2 2 2 1 SCOP 55186 ThrRS/AlaRS common domain
2 2 2 0 SCOP 102462 Peptidyl-tRNA hydrolase II
2 2 2 0 SCOP 63867 MoeA C-terminal domain-like
2 2 2 0 SCOP 47616 GST C-terminal domain-like
2 2 2 1 SCOP 69864 Argininosuccinate synthetase, C-terminal domain
2 2 1 1 SCOP 51690 Nicotinate/Quinolinate PRTase C-terminal domain-like
2 2 2 0 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
2 2 1 1 SCOP 69304 Tricorn protease N-terminal domain
2 2 1 0 SCOP 55890 Sporulation response regulatory protein Spo0B
2 2 2 0 SCOP 49313 Cadherin-like
2 2 1 0 SCOP 52935 PK C-terminal domain-like
2 2 1 0 SCOP 47789 C-terminal domain of RNA polymerase alpha subunit
2 2 1 1 SCOP 55816 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
2 1 1 0 SCOP 53681 Aspartate/glutamate racemase
2 2 2 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
2 2 2 1 SCOP 56037 PheT/TilS domain
2 2 2 1 SCOP 52418 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
2 2 1 0 SCOP 58014 Coiled-coil domain of nucleotide exchange factor GrpE
2 2 1 0 SCOP 57884 Ada DNA repair protein, N-terminal domain (N-Ada 10)
2 2 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
2 2 1 0 SCOP 49363 Purple acid phosphatase, N-terminal domain
2 2 2 1 SCOP 52029 GroEL apical domain-like
2 2 1 1 SCOP 101904 GyrA/ParC C-terminal domain-like
2 2 2 2 SCOP 143548 Serine metabolism enzymes domain
2 2 2 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
2 2 2 0 SCOP 46600 C-terminal UvrC-binding domain of UvrB
2 2 2 0 SCOP 90002 Hypothetical protein YjiA, C-terminal domain
2 2 2 0 SCOP 47648 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
2 2 1 0 SCOP 63418 MurE/MurF N-terminal domain
2 2 2 1 SCOP 110921 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
2 2 1 0 SCOP 51984 MurCD N-terminal domain
2 2 1 0 SCOP 100879 Lesion bypass DNA polymerase (Y-family), little finger domain
2 2 2 1 SCOP 63882 MoeA N-terminal region -like
2 2 1 0 SCOP 55945 TATA-box binding protein-like
2 2 2 0 SCOP 54768 dsRNA-binding domain-like
2 2 2 0 SCOP 52113 BRCT domain
2 2 2 0 SCOP 141259 CarD-like
2 2 1 0 SCOP 82861 Mechanosensitive channel protein MscS (YggB), transmembrane region
2 1 1 1 SCOP 56053 Ribosomal protein L6
2 2 1 0 SCOP 54782 Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
2 2 1 1 SCOP 143975 IlvD/EDD N-terminal domain-like
2 2 1 0 SCOP 54675 Nicotinate/Quinolinate PRTase N-terminal domain-like
2 1 1 0 SCOP 117987 CRISPR-associated protein
2 2 2 0 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
2 2 1 0 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 1 0 SCOP 141986 LD-carboxypeptidase A C-terminal domain-like
2 2 2 0 SCOP 141072 CalX-like
2 2 1 0 SCOP 88688 Families 57/38 glycoside transferase middle domain
2 1 1 0 SCOP 54713 Elongation factor Ts (EF-Ts), dimerisation domain
2 2 1 1 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 1 1 SCOP 81886 Helical scaffold and wing domains of SecA
2 2 2 0 SCOP 54556 Chitinase insertion domain
2 2 1 0 SCOP 51064 Head domain of nucleotide exchange factor GrpE
2 2 1 1 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
2 2 1 1 SCOP 81767 Pre-protein crosslinking domain of SecA
2 2 2 0 SCOP 56519 Penicillin binding protein dimerisation domain
1 1 1 1 SCOP 56731 DNA primase core
1 1 1 0 SCOP 55594 HPr-like
1 1 1 1 SCOP 74982 Small protein B (SmpB)
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 1 SCOP 53178 Peptidyl-tRNA hydrolase-like
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 0 SCOP 143597 YojJ-like
1 1 1 0 SCOP 142433 CinA-like
1 1 1 0 SCOP 82607 YbaB-like
1 1 1 0 SCOP 64376 YlxR-like
1 1 1 0 SCOP 89919 Ribosome-binding factor A, RbfA
1 1 1 1 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
1 1 1 1 SCOP 54570 Ribosomal protein S19
1 1 1 1 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 1 SCOP 55282 RL5-like
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 1 SCOP 52080 Ribosomal proteins L15p and L18e
1 1 1 0 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 0 SCOP 57840 Ribosomal protein L36
1 1 1 1 SCOP 64263 Prokaryotic ribosomal protein L17
1 1 1 0 SCOP 143034 L35p-like
1 1 1 1 SCOP 74731 Ribosomal protein L20
1 1 1 0 SCOP 55831 Thymidylate synthase/dCMP hydroxymethylase
1 1 1 0 SCOP 141091 L21p-like
1 1 1 0 SCOP 110324 Ribosomal L27 protein-like
1 1 1 1 SCOP 53748 Phosphoglycerate kinase
1 1 1 1 SCOP 75625 YebC-like
1 1 1 1 SCOP 82649 SufE/NifU
1 1 1 1 SCOP 50324 Inorganic pyrophosphatase
1 1 1 1 SCOP 160369 Ribosomal protein L10-like
1 1 1 0 SCOP 46992 Ribosomal protein S20
1 1 1 1 SCOP 52943 ATP synthase (F1-ATPase), gamma subunit
1 1 1 0 SCOP 81333 F1F0 ATP synthase subunit C
1 1 1 1 SCOP 55068 Peptide methionine sulfoxide reductase
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 1 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 1 SCOP 55194 Ribosome recycling factor, RRF
1 1 1 0 SCOP 54565 Ribosomal protein S16
1 1 1 0 SCOP 51316 Mss4-like
1 1 1 1 SCOP 69765 IpsF-like
1 1 1 1 SCOP 103263 Chorismate synthase, AroC
1 1 1 0 SCOP 89360 HesB-like domain
1 1 1 1 SCOP 111337 QueA-like
1 1 1 0 SCOP 50715 Ribosomal protein L25-like
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 1 SCOP 102705 NIF3 (NGG1p interacting factor 3)-like
1 1 1 1 SCOP 52304 Type II 3-dehydroquinate dehydratase
1 1 1 0 SCOP 64307 SirA-like
1 1 1 1 SCOP 52121 Lumazine synthase
1 1 1 1 SCOP 81452 Cytochrome c oxidase subunit III-like
1 1 1 0 SCOP 55129 Ribosomal protein L30p/L7e
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 0 SCOP 75169 DsrEFH-like
1 1 1 0 SCOP 54995 Ribosomal protein S6
1 1 1 1 SCOP 56104 SAICAR synthase-like
1 1 1 0 SCOP 56988 Anthrax protective antigen
1 1 1 1 SCOP 69500 DTD-like
1 1 1 0 SCOP 55248 PCD-like
1 1 1 1 SCOP 54919 Nucleoside diphosphate kinase, NDK
1 1 1 0 SCOP 48113 Heme-dependent peroxidases
1 1 1 1 SCOP 49777 PEBP-like
1 1 1 0 SCOP 52047 RNI-like
1 1 1 0 SCOP 57850 RING/U-box
1 1 1 1 SCOP 64153 YjeF N-terminal domain-like
1 1 1 0 SCOP 58113 Apolipoprotein A-I
1 1 1 0 SCOP 103378 2-methylcitrate dehydratase PrpD
1 1 1 0 SCOP 63562 RPB6/omega subunit-like
1 1 1 1 SCOP 63965 Precorrin-8X methylmutase CbiC/CobH
1 1 1 1 SCOP 141734 HisI-like
1 1 1 0 SCOP 111038 YjbQ-like
1 1 1 1 SCOP 55040 Molybdenum cofactor biosynthesis protein C, MoaC
1 1 1 0 SCOP 69635 Type III secretory system chaperone-like
1 1 1 0 SCOP 103642 Sec-C motif
1 1 1 1 SCOP 109770 Nickel-containing superoxide dismutase, NiSOD
1 1 1 1 SCOP 64438 CNF1/YfiH-like putative cysteine hydrolases
1 1 1 1 SCOP 52255 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
1 1 1 0 SCOP 143011 RelE-like
1 1 1 1 SCOP 142754 NadA-like
1 1 1 0 SCOP 57783 Zinc beta-ribbon
1 1 1 0 SCOP 82771 GIY-YIG endonuclease
1 1 1 0 SCOP 82697 PurS-like
1 1 1 1 SCOP 55083 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
1 1 1 0 SCOP 103256 Hypothetical protein TM0160
1 1 1 0 SCOP 55797 PR-1-like
1 1 1 0 SCOP 143990 YbiA-like
1 1 1 0 SCOP 117782 YbjQ-like
1 1 1 0 SCOP 81340 Clc chloride channel
1 1 1 0 SCOP 54690 Molybdopterin synthase subunit MoaE
1 1 1 0 SCOP 102215 Creatininase
1 1 1 0 SCOP 141000 Glu-tRNAGln amidotransferase C subunit
1 1 1 0 SCOP 116842 XseB-like
1 1 1 0 SCOP 50956 Thermostable phytase (3-phytase)
1 1 1 1 SCOP 111304 Recombination protein RecR
1 1 1 0 SCOP 140663 TTHA0068-like
1 1 1 1 SCOP 69796 Thymidylate synthase-complementing protein Thy1
1 1 1 1 SCOP 103365 Hypothetical protein PH1602
1 1 1 1 SCOP 69065 RNase III domain-like
1 1 1 1 SCOP 55200 Translation initiation factor IF3, C-terminal domain
1 1 1 1 SCOP 143081 BB1717-like
1 1 1 0 SCOP 117396 TM1631-like
1 1 1 0 SCOP 50952 Soluble quinoprotein glucose dehydrogenase
1 1 1 0 SCOP 141694 AF2212/PG0164-like
1 1 1 0 SCOP 160719 gpW/gp25-like
1 1 1 1 SCOP 53213 LigB-like
1 1 1 1 SCOP 51391 Thiamin phosphate synthase
1 1 1 1 SCOP 143456 VC0467-like
1 1 1 1 SCOP 48173 Cryptochrome/photolyase FAD-binding domain
1 1 1 0 SCOP 52425 Cryptochrome/photolyase, N-terminal domain
1 1 1 0 SCOP 50969 YVTN repeat-like/Quinoprotein amine dehydrogenase
1 1 1 0 SCOP 89028 Cobalamin adenosyltransferase-like
1 1 1 0 SCOP 81330 Gated mechanosensitive channel
1 1 1 0 SCOP 103088 OmpA-like
1 1 1 0 SCOP 49472 Transthyretin (synonym: prealbumin)
1 1 1 1 SCOP 118215 Proton glutamate symport protein
1 1 1 0 SCOP 159664 CobE/GbiG C-terminal domain-like
1 1 1 0 SCOP 55804 Phoshotransferase/anion transport protein
1 1 1 0 SCOP 48295 TrpR-like
1 1 1 1 SCOP 110581 Indigoidine synthase A-like
1 1 1 0 SCOP 140931 Fic-like
1 1 1 0 SCOP 53323 Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
1 1 1 1 SCOP 144010 CofE-like
1 1 1 0 SCOP 50037 C-terminal domain of transcriptional repressors
1 1 1 0 SCOP 117457 FumA C-terminal domain-like
1 1 1 0 SCOP 75138 HprK N-terminal domain-like
1 1 1 0 SCOP 56507 Methionine synthase activation domain-like
1 1 1 0 SCOP 53182 Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
1 1 1 1 SCOP 110738 Glycerate kinase I
1 1 1 0 SCOP 53062 PTS system fructose IIA component-like
1 1 1 0 SCOP 159774 YerB-like
1 1 1 1 SCOP 111326 Urocanase
1 1 1 0 SCOP 141130 Acetamidase/Formamidase-like
1 1 1 0 SCOP 53163 HybD-like
1 1 1 0 SCOP 159127 HupF/HypC-like
1 1 1 0 SCOP 52309 N-(deoxy)ribosyltransferase-like
1 1 1 0 SCOP 69754 Ribosome binding protein Y (YfiA homologue)
1 1 1 0 SCOP 160379 SP0830-like
1 1 1 0 SCOP 103007 Hypothetical protein TT1725
1 1 1 0 SCOP 110395 CutC-like
1 1 1 0 SCOP 49319 Actinoxanthin-like
1 1 1 0 SCOP 89807 Dodecin-like
1 1 1 0 SCOP 89562 RraA-like
1 1 1 0 SCOP 159672 CbiG N-terminal domain-like
1 1 1 0 SCOP 158791 MgtE N-terminal domain-like
1 1 1 0 SCOP 52038 Barstar-related
1 1 1 1 SCOP 160920 PSTPO5379-like
1 1 1 1 SCOP 102546 RbsD-like
1 1 1 0 SCOP 111321 AF1104-like
1 1 1 1 SCOP 52490 Tubulin nucleotide-binding domain-like
1 1 1 0 SCOP 50199 Staphylococcal nuclease
1 1 1 1 SCOP 48024 N-terminal domain of DnaB helicase
1 1 1 1 SCOP 158832 Tex N-terminal region-like
1 1 1 1 SCOP 69336 Alpha subunit of glutamate synthase, C-terminal domain
1 1 1 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
1 1 1 0 SCOP 52794 PTS system IIB component-like
1 1 1 1 SCOP 56512 Nitric oxide (NO) synthase oxygenase domain
1 1 1 1 SCOP 48619 Phospholipase A2, PLA2
1 1 1 0 SCOP 55608 Homing endonucleases
1 1 1 0 SCOP 82114 Riboflavin kinase-like
1 1 1 1 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 0 SCOP 50405 Actin-crosslinking proteins
1 1 1 1 SCOP 102645 CoaB-like
1 1 1 0 SCOP 159941 MM3350-like
1 1 1 1 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 0 SCOP 81573 F1F0 ATP synthase subunit B, membrane domain
1 1 1 0 SCOP 160387 NosL/MerB-like
1 1 1 0 SCOP 109635 DnaK suppressor protein DksA, alpha-hairpin domain
1 1 1 0 SCOP 81336 F1F0 ATP synthase subunit A
1 1 1 0 SCOP 51344 Epsilon subunit of F1F0-ATP synthase N-terminal domain
1 1 1 0 SCOP 52129 Caspase-like
1 1 1 0 SCOP 55464 Origin of replication-binding domain, RBD-like
1 1 1 0 SCOP 55658 L9 N-domain-like
1 1 1 0 SCOP 158745 LanC-like
1 1 1 1 SCOP 68923 PEP carboxykinase N-terminal domain
1 1 1 1 SCOP 82679 N-utilization substance G protein NusG, N-terminal domain
1 1 1 0 SCOP 56436 C-type lectin-like
1 1 1 0 SCOP 69055 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
1 1 1 0 SCOP 49373 Invasin/intimin cell-adhesion fragments
1 1 1 0 SCOP 81464 Cytochrome c oxidase subunit II-like, transmembrane region
1 1 1 0 SCOP 143212 Rv2632c-like
1 1 1 1 SCOP 55307 Tubulin C-terminal domain-like
1 1 1 1 SCOP 140990 FtsH protease domain-like
1 1 1 0 SCOP 141673 MOSC N-terminal domain-like
1 1 1 1 SCOP 54719 Fe,Mn superoxide dismutase (SOD), C-terminal domain
1 1 1 1 SCOP 143968 UbiD C-terminal domain-like
1 1 1 1 SCOP 52021 Carbamoyl phosphate synthetase, small subunit N-terminal domain
1 1 1 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
1 1 1 0 SCOP 51055 Carbohydrate binding domain
1 1 1 0 SCOP 81891 Poly A polymerase C-terminal region-like
1 1 1 0 SCOP 68912 Rho N-terminal domain-like
1 1 1 1 SCOP 47979 Iron-dependent repressor protein, dimerization domain
1 1 1 1 SCOP 54810 GMP synthetase C-terminal dimerisation domain
1 1 1 0 SCOP 57863 ArfGap/RecO-like zinc finger
1 1 1 0 SCOP 140869 GUN4-like
1 1 1 0 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
1 1 1 0 SCOP 48300 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
1 1 1 0 SCOP 141322 NfeD domain-like
1 1 1 0 SCOP 51101 Mannose-binding lectins
1 1 1 0 SCOP 55252 C-terminal domain of arginine repressor
1 1 1 0 SCOP 46934 UBA-like
1 1 1 0 SCOP 49998 Amine oxidase catalytic domain
1 1 1 0 SCOP 69075 Glutamyl tRNA-reductase dimerization domain
1 1 1 0 SCOP 47831 Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
1 1 1 0 SCOP 75420 YhbC-like, N-terminal domain
1 1 1 1 SCOP 54752 RecA protein, C-terminal domain
1 1 1 0 SCOP 100934 Heat shock protein 70kD (HSP70), C-terminal subdomain
1 1 1 0 SCOP 102735 Trigger factor ribosome-binding domain
1 1 1 0 SCOP 69255 gp5 N-terminal domain-like
1 1 1 0 SCOP 82714 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
1 1 1 0 SCOP 54680 Pyrimidine nucleoside phosphorylase C-terminal domain
1 1 1 1 SCOP 89082 Antibiotic binding domain of TipA-like multidrug resistance regulators
1 1 1 0 SCOP 46557 GreA transcript cleavage protein, N-terminal domain
1 1 1 0 SCOP 47446 Signal peptide-binding domain
1 1 1 0 SCOP 54991 Anticodon-binding domain of PheRS
1 1 1 0 SCOP 82708 R3H domain
1 1 1 0 SCOP 49498 alpha-Amylase inhibitor tendamistat
1 1 1 0 SCOP 50934 Tachylectin-2
1 1 1 1 SCOP 48108 Carbamoyl phosphate synthetase, large subunit connection domain
1 1 1 0 SCOP 57845 B-box zinc-binding domain
1 1 1 1 SCOP 82051 Obg GTP-binding protein N-terminal domain
1 1 1 0 SCOP 143724 PHP14-like
1 1 1 0 SCOP 140864 TROVE domain-like
1 1 1 0 SCOP 55261 GAD domain-like
1 1 1 1 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 1 SCOP 46609 Fe,Mn superoxide dismutase (SOD), N-terminal domain
1 1 1 0 SCOP 117018 ATP-dependent DNA ligase DNA-binding domain
1 1 1 0 SCOP 69742 Glutamyl tRNA-reductase catalytic, N-terminal domain
1 1 1 0 SCOP 75553 Smc hinge domain
1 1 1 0 SCOP 48168 R1 subunit of ribonucleotide reductase, N-terminal domain
1 1 1 0 SCOP 54416 Amine oxidase N-terminal region
1 1 1 0 SCOP 54849 GroEL-intermediate domain like
1 1 1 0 SCOP 56194 Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
1 1 1 0 SCOP 89000 post-HMGL domain-like
1 1 1 0 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 55653 Ribosomal protein L9 C-domain
1 1 1 0 SCOP 143517 TRCF domain-like
1 1 1 1 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 0 SCOP 63433 Fumarylacetoacetate hydrolase, FAH, N-terminal domain
1 1 1 0 SCOP 47644 Methionine synthase domain
1 1 1 0 SCOP 46929 DNA helicase RuvA subunit, C-terminal domain
1 1 1 0 SCOP 160467 PH0987 N-terminal domain-like
1 1 1 0 SCOP 101821 Aminopeptidase/glucanase lid domain
1 1 1 0 SCOP 54364 Translation initiation factor IF3, N-terminal domain
1 1 1 1 SCOP 69705 Transcription factor NusA, N-terminal domain
1 1 1 0 SCOP 140356 PPK N-terminal domain-like
1 1 1 0 SCOP 49863 Hyaluronate lyase-like, C-terminal domain
1 1 1 0 SCOP 47802 DNA polymerase beta, N-terminal domain-like
1 1 1 0 SCOP 81799 Putative methyltransferase TM0872, insert domain
1 1 1 0 SCOP 82829 MesJ substrate recognition domain-like
1 1 1 0 SCOP 102741 Obg GTP-binding protein C-terminal domain
1 1 1 1 SCOP 46915 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
1 1 1 0 SCOP 57770 Methionyl-tRNA synthetase (MetRS), Zn-domain
1 1 1 0 SCOP 117100 Beta-galactosidase LacA, domain 3

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The following superfamilies have one or more weak hits:

SCOP superfamily Myosin rod fragments
SCOP superfamily L-sulfolactate dehydrogenase-like
SCOP superfamily Nop domain
SCOP superfamily GAT-like domain
SCOP superfamily Receptor-binding domain of short tail fibre protein gp12
SCOP superfamily Zn-finger domain of Sec23/24
SCOP superfamily GckA/TtuD-like
SCOP superfamily Antigen MPT63/MPB63 (immunoprotective extracellular protein)
SCOP superfamily Metal cation-transporting ATPase, ATP-binding domain N
SCOP superfamily 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
SCOP superfamily Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
SCOP superfamily Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
SCOP superfamily Family A G protein-coupled receptor-like
SCOP superfamily Adenylylcyclase toxin (the edema factor)
SCOP superfamily Rad50 coiled-coil Zn hook
SCOP superfamily Monomethylamine methyltransferase MtmB
SCOP superfamily YhbC-like, C-terminal domain
SCOP superfamily Cap-Gly domain
SCOP superfamily Variable surface antigen VlsE
SCOP superfamily TolA/TonB C-terminal domain
SCOP superfamily C-terminal domain of PLC-beta
SCOP superfamily Colicin E3 receptor domain
SCOP superfamily Head and neck region of the ectodomain of NDV fusion glycoprotein
SCOP superfamily Phage fibre proteins
SCOP superfamily Phage tail proteins
SCOP superfamily Penicillin-binding protein associated domain
SCOP superfamily Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain
SCOP superfamily C-terminal domain of ProRS
SCOP superfamily Phase 1 flagellin
SCOP superfamily RNA polymerase subunits
SCOP superfamily Bacterial hemolysins
SCOP superfamily Variant surface glycoprotein (N-terminal domain)
SCOP superfamily SNARE fusion complex
SCOP superfamily XRCC4, C-terminal oligomerization domain
SCOP superfamily Tropomyosin
SCOP superfamily Rubredoxin-like
SCOP superfamily Type X cellulose binding domain, CBDX
SCOP superfamily Outer membrane efflux proteins (OEP)
SCOP superfamily Porins
SCOP superfamily Colicin
SCOP superfamily Reovirus inner layer core protein p3
SCOP superfamily Major capsid protein gp5
SCOP superfamily Mog1p/PsbP-like
SCOP superfamily Probable bacterial effector-binding domain
SCOP superfamily Formiminotransferase domain of formiminotransferase-cyclodeaminase.
SCOP superfamily RuBisCO, large subunit, small (N-terminal) domain
SCOP superfamily RNA-binding domain, RBD
SCOP superfamily Alpha-lytic protease prodomain
SCOP superfamily Pili subunits
SCOP superfamily Ubiquitin-like
SCOP superfamily RNase A-like
SCOP superfamily RuBisCo, C-terminal domain
SCOP superfamily E2 regulatory, transactivation domain
SCOP superfamily Head-binding domain of phage P22 tailspike protein
SCOP superfamily AFP III-like domain
SCOP superfamily Peptidase/esterase 'gauge' domain
SCOP superfamily TolB, C-terminal domain
SCOP superfamily D-aminopeptidase, middle and C-terminal domains
SCOP superfamily PH domain-like
SCOP superfamily Barwin-like endoglucanases
SCOP superfamily Electron transport accessory proteins
SCOP superfamily Osmotin, thaumatin-like protein
SCOP superfamily Ecotin, trypsin inhibitor
SCOP superfamily gamma-Crystallin-like
SCOP superfamily PHL pollen allergen
SCOP superfamily PKD domain
SCOP superfamily Serum albumin-like
SCOP superfamily Bacterial muramidases
SCOP superfamily Rad51 N-terminal domain-like
SCOP superfamily SAM/Pointed domain
SCOP superfamily t-snare proteins
SCOP superfamily Calponin-homology domain, CH-domain
SCOP superfamily Colicin E immunity proteins
SCOP superfamily Histidine-containing phosphotransfer domain, HPT domain
SCOP superfamily alpha-catenin/vinculin-like
SCOP superfamily Apolipoprotein
SCOP superfamily Mitochondrial import receptor subunit Tom20
SCOP superfamily PspA lactotransferrin-binding region
SCOP superfamily YfgJ-like
SCOP superfamily MgtE membrane domain-like
SCOP superfamily VPA0735-like
SCOP superfamily TTHC002-like
SCOP superfamily BB2672-like
SCOP superfamily BLRF2-like
SCOP superfamily YdgH-like
SCOP superfamily XCC0632-like
SCOP superfamily PA1994-like
SCOP superfamily AttH-like
SCOP superfamily Lipase chaperone-like
SCOP superfamily Sec2 N-terminal region
SCOP superfamily NOB1 zinc finger-like
SCOP superfamily ImpE-like
SCOP superfamily FdhE-like
SCOP superfamily Prenyltransferase-like
SCOP superfamily TTHA1013/TTHA0281-like
SCOP superfamily WGR domain-like
SCOP superfamily Bacteriophage trimeric proteins domain
SCOP superfamily PTSIIA/GutA-like
SCOP superfamily YccV-like
SCOP superfamily YidB-like
SCOP superfamily Hyaluronidase post-catalytic domain-like
SCOP superfamily Type III secretion system domain
SCOP superfamily MukF C-terminal domain-like
SCOP superfamily FlgN-like
SCOP superfamily LemA-like
SCOP superfamily PE/PPE dimer-like
SCOP superfamily Endosomal sorting complex assembly domain
SCOP superfamily Hypothetical protein PA1324
SCOP superfamily MIT domain
SCOP superfamily DNA methylase specificity domain
SCOP superfamily OmpH-like
SCOP superfamily Sporulation related repeat
SCOP superfamily HSP90 C-terminal domain
SCOP superfamily Hypothetical protein HI1480
SCOP superfamily Adhesin YadA, collagen-binding domain
SCOP superfamily DNA-binding pseudobarrel domain
SCOP superfamily Putative isomerase YbhE
SCOP superfamily Formin homology 2 domain (FH2 domain)
SCOP superfamily Methenyltetrahydrofolate cyclohydrolase-like
SCOP superfamily Docking domain A of the erythromycin polyketide synthase (DEBS)

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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