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  Home > Genomes > Superfamily assignments for Caenorhabditis japonica


Caenorhabditis japonica superfamily assignments

Taxonomy
Taxonomy browser entry

Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis japonica

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Fasta format sequences
Domain assignments

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Assignment statistics

Sequences: 25870 total
10981 (42 %) with assignment
325 average length
37 % amino acid coverage
Domains: 16701 total
1053 unique superfamilies
826 unique families
283 average length
15.9 average superfamily size
94 % formed by duplication
Domain combinations: 1195 domain pairs
3582 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies
931 794 189 13 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
465 418 52 4 SCOP 46689 Homeodomain-like
449 441 21 0 SCOP 81321 Family A G protein-coupled receptor-like
418 408 92 4 SCOP 56112 Protein kinase-like (PK-like)
345 83 61 1 SCOP 48726 Immunoglobulin
304 298 63 4 SCOP 56672 DNA/RNA polymerases
273 268 71 5 SCOP 53098 Ribonuclease H-like
247 243 20 0 SCOP 103473 MFS general substrate transporter
231 222 51 8 SCOP 51735 NAD(P)-binding Rossmann-fold domains
212 188 51 13 SCOP 48371 ARM repeat
207 118 34 0 SCOP 57667 beta-beta-alpha zinc fingers
193 64 50 0 SCOP 57196 EGF/Laminin
192 185 59 7 SCOP 46785 "Winged helix" DNA-binding domain
188 153 40 1 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
181 173 24 12 SCOP 53474 alpha/beta-Hydrolases
172 160 30 1 SCOP 50978 WD40 repeat-like
155 148 39 0 SCOP 57756 Retrovirus zinc finger-like domains
153 149 43 1 SCOP 50630 Acid proteases
152 126 30 3 SCOP 56436 C-type lectin-like
150 122 25 4 SCOP 52833 Thioredoxin-like
150 113 31 1 SCOP 54928 RNA-binding domain, RBD
138 123 50 3 SCOP 57850 RING/U-box
137 137 11 1 SCOP 49354 PapD-like
136 135 32 1 SCOP 53850 Periplasmic binding protein-like II
131 42 25 0 SCOP 57362 BPTI-like
129 24 20 0 SCOP 49313 Cadherin-like
127 120 22 14 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
124 84 25 0 SCOP 81324 Voltage-gated potassium channels
122 46 40 0 SCOP 49265 Fibronectin type III
116 109 70 5 SCOP 50729 PH domain-like
115 113 16 1 SCOP 48508 Nuclear receptor ligand-binding domain
113 110 28 7 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
109 85 31 2 SCOP 48452 TPR-like
109 94 42 3 SCOP 47473 EF-hand
107 12 11 1 SCOP 46966 Spectrin repeat
103 91 30 4 SCOP 51905 FAD/NAD(P)-binding domain
103 81 25 0 SCOP 52058 L domain-like
103 24 22 0 SCOP 57424 LDL receptor-like module
102 87 42 1 SCOP 48403 Ankyrin repeat
97 90 23 3 SCOP 52799 (Phosphotyrosine protein) phosphatases II
96 55 26 6 SCOP 53067 Actin-like ATPase domain
91 91 15 2 SCOP 56219 DNase I-like
87 73 23 1 SCOP 161098 MetI-like
87 48 27 5 SCOP 81296 E set domains
87 58 34 3 SCOP 49899 Concanavalin A-like lectins/glucanases
86 85 13 0 SCOP 63712 Nicotinic receptor ligand binding domain-like
84 80 14 1 SCOP 90112 Neurotransmitter-gated ion-channel transmembrane pore
83 80 24 1 SCOP 53822 Periplasmic binding protein-like I
82 79 28 9 SCOP 54001 Cysteine proteinases
82 62 37 1 SCOP 50156 PDZ domain-like
82 27 19 0 SCOP 82895 TSP-1 type 1 repeat
81 77 8 2 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
79 39 25 0 SCOP 49854 Spermadhesin, CUB domain
78 74 17 6 SCOP 53383 PLP-dependent transferases
78 63 46 1 SCOP 50044 SH3-domain
77 72 34 4 SCOP 54236 Ubiquitin-like
69 69 12 1 SCOP 56300 Metallo-dependent phosphatases
68 40 10 1 SCOP 82866 Multidrug efflux transporter AcrB transmembrane domain
67 50 31 2 SCOP 53300 vWA-like
67 46 16 0 SCOP 90123 ABC transporter transmembrane region
67 49 35 1 SCOP 49562 C2 domain (Calcium/lipid-binding domain, CaLB)
66 59 34 5 SCOP 50249 Nucleic acid-binding proteins
66 62 27 1 SCOP 55550 SH2 domain
63 62 19 2 SCOP 54695 POZ domain
61 53 33 1 SCOP 57903 FYVE/PHD zinc finger
60 30 18 1 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
59 59 24 9 SCOP 56784 HAD-like
58 57 10 8 SCOP 53448 Nucleotide-diphospho-sugar transferases
58 15 9 0 SCOP 63829 Calcium-dependent phosphotriesterase
58 54 28 1 SCOP 55073 Nucleotide cyclase
57 55 22 12 SCOP 51445 (Trans)glycosidases
54 52 14 2 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
49 49 18 5 SCOP 53187 Zn-dependent exopeptidases
45 41 10 0 SCOP 55797 PR-1-like
45 13 10 0 SCOP 57535 Complement control module/SCR domain
44 41 15 1 SCOP 56801 Acetyl-CoA synthetase-like
44 43 5 1 SCOP 48264 Cytochrome P450
44 29 28 1 SCOP 57184 Growth factor receptor domain
42 10 9 0 SCOP 57625 Invertebrate chitin-binding proteins
41 19 12 0 SCOP 57414 Hairpin loop containing domain-like
40 38 10 2 SCOP 53254 Phosphoglycerate mutase-like
39 39 4 1 SCOP 47113 Histone-fold
39 39 11 1 SCOP 47616 GST C-terminal domain-like
38 20 9 1 SCOP 47923 Ypt/Rab-GAP domain of gyp1p
38 30 27 0 SCOP 57889 Cysteine-rich domain
37 34 28 7 SCOP 54211 Ribosomal protein S5 domain 2-like
37 37 6 1 SCOP 103506 Mitochondrial carrier
36 31 21 3 SCOP 52374 Nucleotidylyl transferase
35 35 14 6 SCOP 51556 Metallo-dependent hydrolases
35 34 8 4 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
35 24 9 0 SCOP 103481 Multidrug resistance efflux transporter EmrE
34 32 9 2 SCOP 47413 lambda repressor-like DNA-binding domains
34 17 11 2 SCOP 52777 CoA-dependent acyltransferases
34 9 6 1 SCOP 90257 Myosin rod fragments
34 29 8 0 SCOP 47862 Saposin
33 25 13 4 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
33 21 12 2 SCOP 47954 Cyclin-like
32 28 14 2 SCOP 52096 ClpP/crotonase
32 28 6 1 SCOP 51430 NAD(P)-linked oxidoreductase
32 30 8 3 SCOP 53649 Alkaline phosphatase-like
32 30 13 3 SCOP 52047 RNI-like
32 21 15 0 SCOP 52113 BRCT domain
31 27 9 5 SCOP 100950 NagB/RpiA/CoA transferase-like
31 18 7 2 SCOP 53901 Thiolase-like
31 31 5 0 SCOP 47459 HLH, helix-loop-helix DNA-binding domain
31 31 8 3 SCOP 49417 p53-like transcription factors
30 29 12 1 SCOP 47576 Calponin-homology domain, CH-domain
30 25 14 1 SCOP 54631 CBS-domain pair
30 28 9 2 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
30 29 18 1 SCOP 81665 Calcium ATPase, transmembrane domain M
30 24 13 0 SCOP 54160 Chromo domain-like
29 29 8 1 SCOP 56349 DNA breaking-rejoining enzymes
29 29 19 1 SCOP 46565 Chaperone J-domain
28 28 7 1 SCOP 53720 ALDH-like
28 28 10 2 SCOP 54495 UBC-like
28 28 5 1 SCOP 46458 Globin-like
28 22 8 2 SCOP 47203 Acyl-CoA dehydrogenase C-terminal domain-like
28 27 15 1 SCOP 47031 Second domain of FERM
27 25 9 1 SCOP 50129 GroES-like
27 26 21 3 SCOP 49785 Galactose-binding domain-like
27 27 11 1 SCOP 54373 FAD-linked reductases, C-terminal domain
27 19 8 0 SCOP 90229 CCCH zinc finger
26 25 19 4 SCOP 56059 Glutathione synthetase ATP-binding domain-like
26 26 10 2 SCOP 56645 Acyl-CoA dehydrogenase NM domain-like
26 25 6 1 SCOP 50814 Lipocalins
26 26 19 2 SCOP 48350 GTPase activation domain, GAP
26 14 8 0 SCOP 57567 Serine protease inhibitors
26 16 13 0 SCOP 51045 WW domain
25 25 10 8 SCOP 51182 RmlC-like cupins
25 25 10 0 SCOP 82199 SET domain
25 6 6 0 SCOP 100895 Kazal-type serine protease inhibitors
24 24 9 1 SCOP 51197 Clavaminate synthase-like
24 24 21 3 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
24 20 10 0 SCOP 51338 Composite domain of metallo-dependent hydrolases
24 14 6 1 SCOP 63411 LuxS/MPP-like metallohydrolase
24 23 5 0 SCOP 57959 Leucine zipper domain
23 23 19 2 SCOP 55681 Class II aaRS and biotin synthetases
23 21 16 1 SCOP 50447 Translation proteins
23 22 7 1 SCOP 50494 Trypsin-like serine proteases
23 13 11 1 SCOP 47370 Bromodomain
23 15 8 0 SCOP 55394 Bactericidal permeability-increasing protein, BPI
22 22 12 2 SCOP 103657 BAR/IMD domain-like
22 22 13 1 SCOP 48065 DBL homology domain (DH-domain)
22 19 14 0 SCOP 47769 SAM/Pointed domain
22 22 12 1 SCOP 81653 Calcium ATPase, transduction domain A
21 20 8 2 SCOP 56281 Metallo-hydrolase/oxidoreductase
21 15 6 1 SCOP 54637 Thioesterase/thiol ester dehydrase-isomerase
21 21 9 2 SCOP 56601 beta-lactamase/transpeptidase-like
21 14 11 0 SCOP 55785 PYP-like sensor domain (PAS domain)
21 8 8 1 SCOP 63825 YWTD domain
21 21 12 0 SCOP 81383 F-box domain
21 14 12 0 SCOP 54768 dsRNA-binding domain-like
21 21 6 1 SCOP 47895 Transducin (alpha subunit), insertion domain
20 19 5 1 SCOP 49764 HSP20-like chaperones
20 20 6 2 SCOP 50182 Sm-like ribonucleoproteins
20 14 10 0 SCOP 51126 Pectin lyase-like
20 17 8 1 SCOP 48113 Heme-dependent peroxidases
20 16 13 1 SCOP 51206 cAMP-binding domain-like
20 19 5 1 SCOP 161070 SNF-like
20 15 9 0 SCOP 63748 Tudor/PWWP/MBT
19 19 8 1 SCOP 55811 Nudix
19 18 11 1 SCOP 51395 FMN-linked oxidoreductases
19 18 8 0 SCOP 52151 FabD/lysophospholipase-like
19 19 12 1 SCOP 49879 SMAD/FHA domain
19 18 13 1 SCOP 56176 FAD-binding/transporter-associated domain-like
19 19 12 0 SCOP 46934 UBA-like
19 19 5 1 SCOP 57501 Cystine-knot cytokines
18 16 9 1 SCOP 47095 HMG-box
18 8 6 2 SCOP 55753 Actin depolymerizing proteins
18 18 7 1 SCOP 50891 Cyclophilin-like
18 17 6 2 SCOP 52768 Arginase/deacetylase
18 17 12 1 SCOP 52172 CheY-like
18 14 9 0 SCOP 141571 Pentapeptide repeat-like
18 17 12 2 SCOP 81301 Nucleotidyltransferase
18 13 7 1 SCOP 111369 HlyD-like secretion proteins
18 10 5 1 SCOP 56024 Phospholipase D/nuclease
18 18 10 1 SCOP 81660 Metal cation-transporting ATPase, ATP-binding domain N
18 16 10 1 SCOP 101690 PAZ domain
17 12 6 0 SCOP 52821 Rhodanese/Cell cycle control phosphatase
17 15 10 1 SCOP 58038 SNARE fusion complex
17 16 8 1 SCOP 64356 SNARE-like
17 15 13 1 SCOP 48097 Regulator of G-protein signaling, RGS
17 10 8 0 SCOP 64593 Intermediate filament protein, coiled coil region
16 16 4 4 SCOP 51569 Aldolase
16 16 4 1 SCOP 75304 Amidase signature (AS) enzymes
16 10 9 0 SCOP 47336 ACP-like
16 16 9 2 SCOP 52402 Adenine nucleotide alpha hydrolases-like
16 15 12 0 SCOP 50998 Quinoprotein alcohol dehydrogenase-like
16 16 6 0 SCOP 48008 GntR ligand-binding domain-like
16 15 7 1 SCOP 63737 Leukotriene A4 hydrolase N-terminal domain
16 4 4 1 SCOP 47220 alpha-catenin/vinculin-like
15 14 10 2 SCOP 52317 Class I glutamine amidotransferase-like
15 15 5 1 SCOP 48208 Six-hairpin glycosidases
15 15 5 0 SCOP 50331 MOP-like
15 13 4 1 SCOP 56574 Serpins
15 15 6 1 SCOP 52490 Tubulin nucleotide-binding domain-like
15 12 11 1 SCOP 117281 Kelch motif
15 15 4 0 SCOP 117892 Band 7/SPFH domain
15 15 8 2 SCOP 49599 TRAF domain-like
14 14 3 2 SCOP 53613 Ribokinase-like
14 14 8 1 SCOP 55920 Creatinase/aminopeptidase
14 14 11 1 SCOP 51695 PLC-like phosphodiesterases
14 13 4 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
14 10 6 1 SCOP 54534 FKBP-like
14 14 7 2 SCOP 55781 GAF domain-like
14 14 10 3 SCOP 52467 DHS-like NAD/FAD-binding domain
14 13 3 0 SCOP 48652 Tetraspanin
14 14 7 1 SCOP 101447 Formin homology 2 domain (FH2 domain)
14 11 6 0 SCOP 82927 Cysteine-rich DNA binding domain, (DM domain)
13 13 3 1 SCOP 81338 Aquaporin-like
13 13 4 1 SCOP 56935 Porins
13 12 4 2 SCOP 69572 Activating enzymes of the ubiquitin-like proteins
13 12 10 1 SCOP 64268 PX domain
13 12 8 3 SCOP 55931 Glutamine synthetase/guanido kinase
13 13 6 0 SCOP 161111 Cation efflux protein transmembrane domain-like
13 13 6 1 SCOP 48592 GroEL equatorial domain-like
13 13 10 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
13 13 4 1 SCOP 55307 Tubulin C-terminal domain-like
13 13 6 4 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
13 12 7 1 SCOP 81631 PAP/OAS1 substrate-binding domain
13 13 7 1 SCOP 52087 CRAL/TRIO domain
13 13 9 0 SCOP 161008 Viral glycoprotein ectodomain-like
12 11 7 2 SCOP 53271 PRTase-like
12 12 5 1 SCOP 81606 PP2C-like
12 12 6 2 SCOP 53697 SIS domain
12 11 7 0 SCOP 111331 NAD kinase/diacylglycerol kinase-like
12 12 7 1 SCOP 50104 Translation proteins SH3-like domain
12 12 4 0 SCOP 69593 Glycerol-3-phosphate (1)-acyltransferase
12 11 6 2 SCOP 51161 Trimeric LpxA-like enzymes
12 8 5 2 SCOP 46626 Cytochrome c
12 12 2 2 SCOP 54593 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
12 11 10 1 SCOP 51230 Single hybrid motif
12 12 8 0 SCOP 46894 C-terminal effector domain of the bipartite response regulators
12 11 6 2 SCOP 53955 Lysozyme-like
12 12 5 1 SCOP 55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
12 11 7 0 SCOP 55103 FAD-linked oxidases, C-terminal domain
12 12 11 1 SCOP 101898 NHL repeat
12 12 11 0 SCOP 47384 Homodimeric domain of signal transducing histidine kinase
12 12 5 2 SCOP 52029 GroEL apical domain-like
12 11 10 2 SCOP 63380 Riboflavin synthase domain-like
12 6 6 0 SCOP 57610 Thyroglobulin type-1 domain
12 12 4 0 SCOP 144232 HIT/MYND zinc finger-like
12 12 4 0 SCOP 55031 Bacterial exopeptidase dimerisation domain
12 6 1 0 SCOP 56968 Lipovitellin-phosvitin complex; beta-sheet shell regions
12 8 7 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
12 4 4 0 SCOP 81698 FF domain
11 5 5 0 SCOP 47060 S15/NS1 RNA-binding domain
11 10 4 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
11 10 4 0 SCOP 50985 RCC1/BLIP-II
11 11 4 2 SCOP 56104 SAICAR synthase-like
11 11 7 2 SCOP 109604 HD-domain/PDEase-like
11 11 6 1 SCOP 88723 PIN domain-like
11 11 5 0 SCOP 54897 Protease propeptides/inhibitors
11 9 5 1 SCOP 57997 Tropomyosin
11 11 7 0 SCOP 55856 Cytochrome b5-like heme/steroid binding domain
11 11 7 3 SCOP 55961 Bet v1-like
11 11 4 2 SCOP 52283 Formate/glycerate dehydrogenase catalytic domain-like
11 10 4 0 SCOP 54909 Dimeric alpha+beta barrel
11 9 4 1 SCOP 118215 Proton glutamate symport protein
11 11 9 1 SCOP 82171 DPP6 N-terminal domain-like
11 8 7 1 SCOP 54980 EF-G C-terminal domain-like
11 10 10 1 SCOP 52440 PreATP-grasp domain
11 4 4 1 SCOP 53738 Phosphoglucomutase, first 3 domains
11 11 5 3 SCOP 48464 ENTH/VHS domain
11 11 4 0 SCOP 54849 GroEL-intermediate domain like
11 6 2 1 SCOP 141739 MFPT repeat-like
10 10 6 2 SCOP 53927 Cytidine deaminase-like
10 10 7 2 SCOP 55120 Pseudouridine synthase
10 9 7 1 SCOP 81345 ABC transporter involved in vitamin B12 uptake, BtuC
10 10 4 1 SCOP 54427 NTF2-like
10 10 7 2 SCOP 74650 Galactose mutarotase-like
10 9 3 1 SCOP 51679 Bacterial luciferase-like
10 8 6 1 SCOP 49503 Cupredoxins
10 10 6 1 SCOP 81340 Clc chloride channel
10 10 3 0 SCOP 48619 Phospholipase A2, PLA2
10 7 5 0 SCOP 54106 LysM domain
10 9 7 0 SCOP 74853 Lamin A/C globular tail domain
10 10 5 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
10 10 4 1 SCOP 100934 Heat shock protein 70kD (HSP70), C-terminal subdomain
10 4 4 0 SCOP 57256 Elafin-like
10 1 1 0 SCOP 75399 Plakin repeat
9 8 3 2 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
9 5 3 0 SCOP 81333 F1F0 ATP synthase subunit C
9 8 7 3 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
9 9 6 2 SCOP 55315 L30e-like
9 8 5 1 SCOP 111126 Ligand-binding domain in the NO signalling and Golgi transport
9 9 8 2 SCOP 88713 Glycoside hydrolase/deacetylase
9 4 4 0 SCOP 55008 HMA, heavy metal-associated domain
9 9 3 0 SCOP 52266 SGNH hydrolase
9 9 5 0 SCOP 144091 Rhomboid-like
9 9 5 0 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
9 9 4 0 SCOP 53092 Creatinase/prolidase N-terminal domain
9 5 4 0 SCOP 50199 Staphylococcal nuclease
9 9 3 0 SCOP 50370 Ricin B-like lectins
9 9 5 1 SCOP 47661 t-snare proteins
9 8 5 1 SCOP 51971 Nucleotide-binding domain
9 9 7 0 SCOP 51011 Glycosyl hydrolase domain
9 9 1 1 SCOP 49870 Osmotin, thaumatin-like protein
9 8 5 1 SCOP 48225 Seven-hairpin glycosidases
9 9 4 0 SCOP 52075 Outer arm dynein light chain 1
9 9 3 0 SCOP 90250 Troponin coil-coiled subunits
9 9 8 1 SCOP 48366 Ras GEF
9 9 4 0 SCOP 101576 Supernatant protein factor (SPF), C-terminal domain
9 9 2 0 SCOP 57302 Snake toxin-like
8 8 6 1 SCOP 102114 Radical SAM enzymes
8 7 5 2 SCOP 54506 Diaminopimelate epimerase-like
8 7 3 2 SCOP 55909 Pentein
8 8 7 1 SCOP 52954 Class II aaRS ABD-related
8 8 3 0 SCOP 52091 SpoIIaa-like
8 7 5 0 SCOP 57783 Zinc beta-ribbon
8 8 6 0 SCOP 81901 HCP-like
8 6 5 0 SCOP 143990 YbiA-like
8 8 8 1 SCOP 88697 PUA domain-like
8 8 4 0 SCOP 103515 Autotransporter
8 8 6 0 SCOP 100939 SPOC domain-like
8 8 4 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
8 8 3 0 SCOP 48498 Tetracyclin repressor-like, C-terminal domain
8 8 7 2 SCOP 52343 Ferredoxin reductase-like, C-terminal NADP-linked domain
8 8 3 0 SCOP 51294 Hedgehog/intein (Hint) domain
8 8 6 1 SCOP 74788 Cullin repeat-like
8 8 8 1 SCOP 47986 DEATH domain
8 8 5 1 SCOP 56204 Hect, E3 ligase catalytic domain
8 5 5 0 SCOP 69179 Integrin domains
8 7 5 0 SCOP 55666 Ribonuclease PH domain 2-like
7 6 4 3 SCOP 54197 HIT-like
7 7 6 1 SCOP 52218 Flavoproteins
7 7 7 0 SCOP 54292 2Fe-2S ferredoxin-like
7 7 2 2 SCOP 50475 FMN-binding split barrel
7 7 4 0 SCOP 46579 Prefoldin
7 7 2 1 SCOP 52499 Isochorismatase-like hydrolases
7 7 4 1 SCOP 47027 Acyl-CoA binding protein
7 7 6 0 SCOP 141868 EAL domain-like
7 7 6 2 SCOP 53807 "Helical backbone" metal receptor
7 7 3 0 SCOP 88946 Sigma2 domain of RNA polymerase sigma factors
7 7 5 1 SCOP 103025 Folate-binding domain
7 5 5 0 SCOP 55021 ACT-like
7 7 5 0 SCOP 69322 Tricorn protease domain 2
7 5 5 0 SCOP 47781 RuvA domain 2-like
7 5 5 1 SCOP 52743 Subtilisin-like
7 7 4 1 SCOP 52922 TK C-terminal domain-like
7 7 5 0 SCOP 81995 beta-sandwich domain of Sec23/24
7 6 6 0 SCOP 47090 PGBD-like
7 7 2 1 SCOP 54826 Enolase N-terminal domain-like
7 7 5 0 SCOP 57863 ArfGap/RecO-like zinc finger
7 6 6 0 SCOP 90209 Ran binding protein zinc finger-like
7 7 2 0 SCOP 160240 Cation efflux protein cytoplasmic domain-like
7 6 5 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
7 7 7 0 SCOP 57845 B-box zinc-binding domain
7 7 5 1 SCOP 101912 Sema domain
7 6 4 1 SCOP 89837 Doublecortin (DC)
7 2 2 0 SCOP 57603 FnI-like domain
6 6 3 0 SCOP 57829 Zn-binding ribosomal proteins
6 6 4 1 SCOP 53790 Tetrapyrrole methylase
6 6 5 2 SCOP 53137 Translational machinery components
6 6 2 3 SCOP 47240 Ferritin-like
6 6 2 3 SCOP 51658 Xylose isomerase-like
6 6 5 1 SCOP 75217 alpha/beta knot
6 6 6 2 SCOP 54862 4Fe-4S ferredoxins
6 6 2 1 SCOP 56655 Carbohydrate phosphatase
6 6 3 1 SCOP 48576 Terpenoid synthases
6 6 3 0 SCOP 56019 The spindle assembly checkpoint protein mad2
6 6 3 0 SCOP 51306 LexA/Signal peptidase
6 6 4 1 SCOP 49777 PEBP-like
6 6 4 1 SCOP 51069 Carbonic anhydrase
6 6 3 3 SCOP 69118 AhpD-like
6 6 5 1 SCOP 53795 PEP carboxykinase-like
6 5 5 0 SCOP 46955 Putative DNA-binding domain
6 5 3 1 SCOP 111352 Ammonium transporter
6 6 1 2 SCOP 51604 Enolase C-terminal domain-like
6 6 6 1 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
6 6 2 0 SCOP 141523 L,D-transpeptidase catalytic domain-like
6 6 6 1 SCOP 51246 Rudiment single hybrid motif
6 5 4 0 SCOP 50965 Galactose oxidase, central domain
6 2 2 1 SCOP 55973 S-adenosylmethionine synthetase
6 5 3 0 SCOP 48056 Di-copper centre-containing domain
6 3 2 0 SCOP 161093 MgtE membrane domain-like
6 6 1 0 SCOP 48431 Lipovitellin-phosvitin complex, superhelical domain
6 6 3 0 SCOP 46938 CRAL/TRIO N-terminal domain
6 3 3 1 SCOP 49742 PHM/PNGase F
6 3 2 1 SCOP 141072 CalX-like
6 6 6 1 SCOP 56366 SMAD MH1 domain
6 6 2 0 SCOP 56994 Insulin-like
6 6 4 0 SCOP 103575 Plexin repeat
6 6 5 1 SCOP 49447 Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
6 6 5 1 SCOP 75632 Cullin homology domain
6 6 5 0 SCOP 54556 Chitinase insertion domain
6 3 2 1 SCOP 82615 Polo-box domain
6 6 3 1 SCOP 49758 Calpain large subunit, middle domain (domain III)
5 5 2 1 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
5 5 3 3 SCOP 51316 Mss4-like
5 5 2 1 SCOP 56796 Dehydroquinate synthase-like
5 5 3 1 SCOP 144122 Tim10-like
5 5 1 1 SCOP 56815 Sec1/munc18-like (SM) proteins
5 5 1 1 SCOP 48317 Acid phosphatase/Vanadium-dependent haloperoxidase
5 5 3 1 SCOP 54648 DLC
5 5 3 2 SCOP 48239 Terpenoid cyclases/Protein prenyltransferases
5 4 3 1 SCOP 56317 Carbon-nitrogen hydrolase
5 5 5 1 SCOP 47819 HRDC-like
5 5 4 1 SCOP 56529 FAH
5 5 3 0 SCOP 55718 SCP-like
5 5 3 2 SCOP 50692 ADC-like
5 5 4 1 SCOP 53218 Molybdenum cofactor biosynthesis proteins
5 5 3 2 SCOP 50800 PK beta-barrel domain-like
5 3 3 0 SCOP 69065 RNase III domain-like
5 5 2 1 SCOP 89796 CoA-transferase family III (CaiB/BaiF)
5 5 3 1 SCOP 55804 Phoshotransferase/anion transport protein
5 5 3 0 SCOP 56925 OMPA-like
5 3 3 1 SCOP 56003 Molybdenum cofactor-binding domain
5 3 3 1 SCOP 55979 DNA clamp
5 5 3 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
5 5 4 0 SCOP 50960 TolB, C-terminal domain
5 5 3 0 SCOP 54403 Cystatin/monellin
5 5 4 0 SCOP 50405 Actin-crosslinking proteins
5 4 2 0 SCOP 49344 CBD9-like
5 5 2 1 SCOP 48019 post-AAA+ oligomerization domain-like
5 5 3 1 SCOP 52210 Succinyl-CoA synthetase domains
5 5 3 1 SCOP 140990 FtsH protease domain-like
5 5 3 0 SCOP 49363 Purple acid phosphatase, N-terminal domain
5 4 4 0 SCOP 55060 GHMP Kinase, C-terminal domain
5 5 4 0 SCOP 68906 SAP domain
5 5 4 1 SCOP 56425 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
5 5 3 1 SCOP 56496 Fibrinogen C-terminal domain-like
5 3 3 0 SCOP 55124 Nitrite/Sulfite reductase N-terminal domain-like
5 5 4 1 SCOP 74924 Cap-Gly domain
5 5 4 0 SCOP 50923 Hemopexin-like domain
5 4 3 0 SCOP 140741 RUN domain-like
5 3 3 1 SCOP 109905 Surp module (SWAP domain)
5 5 3 0 SCOP 63707 Ganglioside M2 (gm2) activator
5 5 2 0 SCOP 54368 Glutamine synthetase, N-terminal domain
5 5 4 0 SCOP 75553 Smc hinge domain
5 5 3 1 SCOP 63501 Frizzled cysteine-rich domain
4 4 3 3 SCOP 51366 Ribulose-phoshate binding barrel
4 2 1 0 SCOP 56214 4'-phosphopantetheinyl transferase
4 2 1 1 SCOP 53784 Phosphofructokinase
4 4 2 0 SCOP 55174 Alpha-L RNA-binding motif
4 4 2 2 SCOP 48557 L-aspartase-like
4 4 4 0 SCOP 51261 Duplicated hybrid motif
4 4 4 2 SCOP 48150 DNA-glycosylase
4 4 2 1 SCOP 51412 Inosine monophosphate dehydrogenase (IMPDH)
4 4 4 1 SCOP 52949 Macro domain-like
4 4 3 1 SCOP 55469 FMN-dependent nitroreductase-like
4 4 4 1 SCOP 56752 D-aminoacid aminotransferase-like PLP-dependent enzymes
4 4 4 0 SCOP 53639 AraD/HMP-PK domain-like
4 4 1 2 SCOP 52972 ITPase-like
4 4 3 0 SCOP 110849 ParB/Sulfiredoxin
4 4 2 0 SCOP 55257 RBP11-like subunits of RNA polymerase
4 4 2 1 SCOP 55418 eIF4e-like
4 4 4 0 SCOP 47598 Ribbon-helix-helix
4 4 3 1 SCOP 52016 LeuD/IlvD-like
4 4 1 0 SCOP 55331 Tautomerase/MIF
4 4 4 1 SCOP 50022 ISP domain
4 4 3 0 SCOP 89733 L-sulfolactate dehydrogenase-like
4 4 3 1 SCOP 54518 Tubby C-terminal domain-like
4 3 3 0 SCOP 50952 Soluble quinoprotein glucose dehydrogenase
4 4 1 1 SCOP 82544 GckA/TtuD-like
4 4 3 0 SCOP 48295 TrpR-like
4 4 4 0 SCOP 140931 Fic-like
4 4 3 0 SCOP 109709 KorB DNA-binding domain-like
4 4 3 1 SCOP 50346 PRC-barrel domain
4 4 4 0 SCOP 55186 ThrRS/AlaRS common domain
4 4 4 1 SCOP 69318 Integrin alpha N-terminal domain
4 3 3 0 SCOP 56014 Nitrite and sulphite reductase 4Fe-4S domain-like
4 3 2 1 SCOP 142877 EndoU-like
4 3 3 0 SCOP 55658 L9 N-domain-like
4 4 3 1 SCOP 68923 PEP carboxykinase N-terminal domain
4 2 1 0 SCOP 53681 Aspartate/glutamate racemase
4 4 4 0 SCOP 48334 DNA repair protein MutS, domain III
4 2 2 0 SCOP 101967 Adhesin YadA, collagen-binding domain
4 4 4 1 SCOP 56042 PurM C-terminal domain-like
4 4 4 1 SCOP 55326 PurM N-terminal domain-like
4 4 4 0 SCOP 117289 Nucleoporin domain
4 3 3 0 SCOP 158702 Sec63 N-terminal domain-like
4 3 3 0 SCOP 118310 AN1-like Zinc finger
4 2 2 0 SCOP 82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
4 4 4 2 SCOP 49348 Clathrin adaptor appendage domain
4 4 4 1 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
4 4 3 1 SCOP 82708 R3H domain
4 4 3 0 SCOP 111418 Hormone receptor domain
4 3 3 0 SCOP 49723 Lipase/lipooxygenase domain (PLAT/LH2 domain)
4 4 2 1 SCOP 101152 Mob1/phocein
4 4 3 0 SCOP 54277 CAD & PB1 domains
4 4 3 0 SCOP 48670 Transducin (heterotrimeric G protein), gamma chain
4 4 3 1 SCOP 46774 ARID-like
4 4 2 1 SCOP 47874 Annexin
4 4 3 1 SCOP 111347 Rap/Ran-GAP
4 4 3 0 SCOP 158573 GINS helical bundle-like
4 3 3 1 SCOP 82109 MIR domain
4 4 3 1 SCOP 116846 MIT domain
4 4 4 0 SCOP 57440 Kringle-like
4 4 3 1 SCOP 82754 C-terminal, gelsolin-like domain of Sec23/24
4 4 2 1 SCOP 52025 PA domain
4 4 4 1 SCOP 48425 Sec7 domain
4 4 4 0 SCOP 103107 Hypothetical protein c14orf129, hspc210
4 2 2 1 SCOP 109885 I/LWEQ domain
4 4 2 0 SCOP 57552 Blood coagulation inhibitor (disintegrin)
4 4 2 1 SCOP 81382 Skp1 dimerisation domain-like
4 2 2 0 SCOP 110035 GDNF receptor-like
4 4 2 0 SCOP 63763 SAND domain-like
4 4 4 0 SCOP 55277 GYF domain
4 4 2 0 SCOP 140612 EB1 dimerisation domain-like
4 4 2 1 SCOP 54585 Cdc48 domain 2-like
4 4 4 0 SCOP 101790 Aminomethyltransferase beta-barrel domain
3 3 2 1 SCOP 53167 Purine and uridine phosphorylases
3 3 3 0 SCOP 56808 Ribosomal protein L1
3 3 3 0 SCOP 46911 Ribosomal protein S18
3 3 3 0 SCOP 52080 Ribosomal proteins L15p and L18e
3 3 3 0 SCOP 110324 Ribosomal L27 protein-like
3 3 2 1 SCOP 82549 DAK1/DegV-like
3 3 3 0 SCOP 52980 Restriction endonuclease-like
3 3 3 0 SCOP 160369 Ribosomal protein L10-like
3 3 3 0 SCOP 53633 Carbamate kinase-like
3 3 1 0 SCOP 89360 HesB-like domain
3 3 1 1 SCOP 55298 YjgF-like
3 3 3 1 SCOP 51419 PLP-binding barrel
3 3 2 1 SCOP 48256 Citrate synthase
3 3 1 1 SCOP 56634 Heme-dependent catalase-like
3 3 2 1 SCOP 53590 Nucleoside hydrolase
3 3 3 1 SCOP 144000 Oxysterol-binding protein-like
3 2 2 1 SCOP 53774 Glutaminase/Asparaginase
3 2 2 0 SCOP 140959 Indolic compounds 2,3-dioxygenase-like
3 3 3 1 SCOP 54919 Nucleoside diphosphate kinase, NDK
3 2 2 0 SCOP 53056 beta-carbonic anhydrase, cab
3 3 3 0 SCOP 58113 Apolipoprotein A-I
3 3 1 1 SCOP 55770 Profilin (actin-binding protein)
3 3 2 2 SCOP 55620 Tetrahydrobiopterin biosynthesis enzymes-like
3 3 2 0 SCOP 102712 JAB1/MPN domain
3 3 2 0 SCOP 110857 Gamma-glutamyl cyclotransferase-like
3 3 1 1 SCOP 56762 HydB/Nqo4-like
3 3 3 0 SCOP 50242 TIMP-like
3 3 3 0 SCOP 82689 Mechanosensitive channel protein MscS (YggB), C-terminal domain
3 3 3 0 SCOP 160935 VPA0735-like
3 1 1 0 SCOP 82153 FAS1 domain
3 3 2 1 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
3 3 2 1 SCOP 52242 Cobalamin (vitamin B12)-binding domain
3 3 2 1 SCOP 101473 DhaL-like
3 3 2 0 SCOP 75011 3-carboxy-cis,cis-mucoante lactonizing enzyme
3 3 1 1 SCOP 103196 Roadblock/LC7 domain
3 3 2 1 SCOP 56534 Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
3 3 1 1 SCOP 89124 Nop domain
3 3 3 1 SCOP 111321 AF1104-like
3 3 3 2 SCOP 46548 alpha-helical ferredoxin
3 3 2 0 SCOP 102462 Peptidyl-tRNA hydrolase II
3 3 3 0 SCOP 56563 Major capsid protein gp5
3 3 3 0 SCOP 158832 Tex N-terminal region-like
3 3 3 1 SCOP 53706 Formate dehydrogenase/DMSO reductase, domains 1-3
3 3 2 1 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
3 3 3 0 SCOP 141255 YccV-like
3 3 3 3 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
3 3 2 0 SCOP 58026 Delta-sleep-inducing peptide immunoreactive peptide
3 3 3 1 SCOP 142921 WGR domain-like
3 3 3 1 SCOP 56719 Type II DNA topoisomerase
3 3 3 1 SCOP 52129 Caspase-like
3 3 2 0 SCOP 49464 Carboxypeptidase regulatory domain-like
3 3 3 1 SCOP 52418 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
3 3 2 0 SCOP 141673 MOSC N-terminal domain-like
3 3 2 1 SCOP 54719 Fe,Mn superoxide dismutase (SOD), C-terminal domain
3 3 3 1 SCOP 53623 MurD-like peptide ligases, catalytic domain
3 3 3 1 SCOP 54665 CO dehydrogenase molybdoprotein N-domain-like
3 3 2 0 SCOP 46977 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
3 3 3 0 SCOP 47648 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
3 3 2 0 SCOP 47823 lambda integrase-like, N-terminal domain
3 2 2 1 SCOP 55945 TATA-box binding protein-like
3 3 3 1 SCOP 47741 CO dehydrogenase ISP C-domain like
3 3 2 0 SCOP 52413 UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
3 3 3 1 SCOP 55957 Phosphoglucomutase, C-terminal domain
3 3 2 1 SCOP 81837 BEACH domain
3 2 2 0 SCOP 82714 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
3 3 3 1 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
3 3 2 0 SCOP 81271 TGS-like
3 2 2 1 SCOP 48445 14-3-3 protein
3 3 2 0 SCOP 69000 FAD-dependent thiol oxidase
3 3 2 0 SCOP 47396 Transcription factor IIA (TFIIA), alpha-helical domain
3 3 3 0 SCOP 47391 Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit
3 3 3 0 SCOP 82671 SEA domain
3 2 2 0 SCOP 117839 WWE domain
3 3 1 1 SCOP 110004 Glycolipid transfer protein, GLTP
3 2 2 0 SCOP 82051 Obg GTP-binding protein N-terminal domain
3 3 2 1 SCOP 144074 E2F-DP heterodimerization region
3 3 1 0 SCOP 47672 Transferrin receptor-like dimerisation domain
3 3 3 1 SCOP 88688 Families 57/38 glycoside transferase middle domain
3 2 2 0 SCOP 50911 Mannose 6-phosphate receptor domain
3 2 2 0 SCOP 56487 SRCR-like
3 3 2 0 SCOP 55149 Pepsin inhibitor-3
3 3 3 0 SCOP 110942 HSP90 C-terminal domain
3 2 2 1 SCOP 47040 Kix domain of CBP (creb binding protein)
3 3 3 0 SCOP 140111 Endosomal sorting complex assembly domain
3 3 2 0 SCOP 50784 Transcription factor IIA (TFIIA), beta-barrel domain
3 2 2 1 SCOP 57933 TAZ domain
3 3 3 1 SCOP 48034 Guanido kinase N-terminal domain
3 1 1 0 SCOP 47045 RAP domain-like
3 3 1 1 SCOP 81327 Small-conductance potassium channel
3 3 3 2 SCOP 55711 Subdomain of clathrin and coatomer appendage domain
3 2 2 1 SCOP 100909 IP3 receptor type 1 binding core, domain 2
3 3 3 0 SCOP 47005 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
3 1 1 0 SCOP 90193 Notch domain
3 3 2 1 SCOP 89009 GAT-like domain
3 3 2 1 SCOP 81811 Helical domain of Sec23/24
3 3 3 1 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
3 3 2 0 SCOP 82919 Zn-finger domain of Sec23/24
2 2 1 1 SCOP 47973 Ribosomal protein S7
2 2 1 2 SCOP 52141 Uracil-DNA glycosylase-like
2 2 2 0 SCOP 54999 Ribosomal protein S10
2 2 2 1 SCOP 52166 Ribosomal protein L4
2 2 2 0 SCOP 54843 Ribosomal protein L22
2 2 1 1 SCOP 54686 Ribosomal protein L16p/L10e
2 2 1 1 SCOP 50193 Ribosomal protein L14
2 2 1 1 SCOP 55282 RL5-like
2 2 1 1 SCOP 103491 Preprotein translocase SecY subunit
2 2 1 0 SCOP 46946 S13-like H2TH domain
2 2 1 0 SCOP 75620 Release factor
2 2 1 1 SCOP 50324 Inorganic pyrophosphatase
2 2 1 0 SCOP 55068 Peptide methionine sulfoxide reductase
2 2 1 0 SCOP 52161 Ribosomal protein L13
2 2 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
2 2 2 0 SCOP 54565 Ribosomal protein S16
2 2 2 1 SCOP 51730 FAD-linked oxidoreductase
2 2 2 1 SCOP 51283 dUTPase-like
2 2 2 1 SCOP 51713 tRNA-guanine transglycosylase
2 2 2 1 SCOP 50715 Ribosomal protein L25-like
2 2 2 1 SCOP 52313 Ribosomal protein S2
2 2 2 0 SCOP 82657 BolA-like
2 2 2 0 SCOP 54060 His-Me finger endonucleases
2 2 1 0 SCOP 143744 GlcG-like
2 2 1 0 SCOP 54762 Signal recognition particle alu RNA binding heterodimer, SRP9/14
2 2 2 0 SCOP 140718 Mediator hinge subcomplex-like
2 2 2 1 SCOP 53328 Formyltransferase
2 2 1 1 SCOP 57798 Casein kinase II beta subunit
2 2 1 0 SCOP 159468 AtpF-like
2 2 1 2 SCOP 90096 Subunits of heterodimeric actin filament capping protein Capz
2 2 1 1 SCOP 48439 Protein prenylyltransferase
2 2 1 0 SCOP 81508 Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
2 2 1 1 SCOP 49329 Cu,Zn superoxide dismutase-like
2 2 2 1 SCOP 82282 Homocysteine S-methyltransferase
2 2 2 0 SCOP 47694 Cytochrome c oxidase subunit h
2 2 2 0 SCOP 53032 tRNA-intron endonuclease catalytic domain-like
2 2 2 1 SCOP 64153 YjeF N-terminal domain-like
2 2 2 0 SCOP 55159 eIF1-like
2 2 2 1 SCOP 143113 NAP-like
2 2 2 1 SCOP 56399 ADP-ribosylation
2 2 2 0 SCOP 48690 Epsilon subunit of mitochondrial F1F0-ATP synthase
2 2 2 0 SCOP 81342 Transmembrane di-heme cytochromes
2 2 2 0 SCOP 143120 YefM-like
2 2 1 1 SCOP 56266 DmpA/ArgJ-like
2 2 2 1 SCOP 117916 Fe-S cluster assembly (FSCA) domain-like
2 2 2 1 SCOP 56524 Oxidoreductase molybdopterin-binding domain
2 2 2 1 SCOP 46767 Methylated DNA-protein cysteine methyltransferase, C-terminal domain
2 2 2 0 SCOP 89550 PHP domain-like
2 2 2 0 SCOP 56954 Outer membrane efflux proteins (OEP)
2 2 2 0 SCOP 55154 CYTH-like phosphatases
2 2 2 1 SCOP 52507 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
2 2 1 1 SCOP 54690 Molybdopterin synthase subunit MoaE
2 2 1 1 SCOP 53732 Aconitase iron-sulfur domain
2 2 2 0 SCOP 50969 YVTN repeat-like/Quinoprotein amine dehydrogenase
2 2 2 1 SCOP 89028 Cobalamin adenosyltransferase-like
2 2 2 0 SCOP 89095 GatB/YqeY motif
2 2 1 0 SCOP 102588 LmbE-like
2 2 1 0 SCOP 56747 Prim-pol domain
2 1 1 1 SCOP 56507 Methionine synthase activation domain-like
2 2 1 1 SCOP 51703 Cobalamin (vitamin B12)-dependent enzymes
2 2 2 1 SCOP 111326 Urocanase
2 2 2 1 SCOP 50486 FMT C-terminal domain-like
2 2 1 0 SCOP 101874 YceI-like
2 2 2 1 SCOP 64076 MTH938-like
2 2 2 0 SCOP 89562 RraA-like
2 2 2 1 SCOP 47592 SWIB/MDM2 domain
2 2 2 0 SCOP 82704 AlbA-like
2 2 2 1 SCOP 54984 eEF-1beta-like
2 2 2 0 SCOP 63867 MoeA C-terminal domain-like
2 2 2 0 SCOP 46589 tRNA-binding arm
2 2 2 0 SCOP 52200 Toll/Interleukin receptor TIR domain
2 2 2 2 SCOP 51690 Nicotinate/Quinolinate PRTase C-terminal domain-like
2 2 2 0 SCOP 82114 Riboflavin kinase-like
2 2 2 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
2 2 2 0 SCOP 160991 CV3147-like
2 2 2 1 SCOP 102645 CoaB-like
2 1 1 0 SCOP 82185 Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
2 2 1 1 SCOP 52935 PK C-terminal domain-like
2 2 2 0 SCOP 52009 Phosphohistidine domain
2 1 1 0 SCOP 116726 TrkA C-terminal domain-like
2 1 1 0 SCOP 48029 FliG
2 2 2 0 SCOP 51215 Regulatory protein AraC
2 2 1 0 SCOP 58014 Coiled-coil domain of nucleotide exchange factor GrpE
2 2 2 1 SCOP 50621 Alanine racemase C-terminal domain-like
2 1 1 1 SCOP 110019 ERO1-like
2 2 2 1 SCOP 52021 Carbamoyl phosphate synthetase, small subunit N-terminal domain
2 2 2 0 SCOP 54171 DNA-binding domain
2 2 2 1 SCOP 54810 GMP synthetase C-terminal dimerisation domain
2 2 2 0 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
2 2 2 1 SCOP 55447 CO dehydrogenase flavoprotein C-terminal domain-like
2 2 1 1 SCOP 56327 LDH C-terminal domain-like
2 2 1 1 SCOP 101887 Apyrase
2 2 2 0 SCOP 100879 Lesion bypass DNA polymerase (Y-family), little finger domain
2 2 2 0 SCOP 75689 Zinc-binding domain of translation initiation factor 2 beta
2 2 2 0 SCOP 100966 Translation initiation factor 2 beta, aIF2beta, N-terminal domain
2 2 1 1 SCOP 55637 Cell cycle regulatory proteins
2 2 2 0 SCOP 82861 Mechanosensitive channel protein MscS (YggB), transmembrane region
2 2 1 0 SCOP 56973 Aerolisin/ETX pore-forming domain
2 1 1 1 SCOP 56053 Ribosomal protein L6
2 2 2 0 SCOP 55545 beta-N-acetylhexosaminidase-like domain
2 2 2 1 SCOP 54675 Nicotinate/Quinolinate PRTase N-terminal domain-like
2 2 2 1 SCOP 56542 Substrate-binding domain of HMG-CoA reductase
2 2 2 0 SCOP 55048 Probable ACP-binding domain of malonyl-CoA ACP transacylase
2 2 2 0 SCOP 160696 BTG domain-like
2 2 1 1 SCOP 50353 Cytokine
2 2 2 1 SCOP 56854 Bcl-2 inhibitors of programmed cell death
2 2 2 0 SCOP 57492 Trefoil
2 2 1 0 SCOP 118359 Expressed protein At2g23090/F21P24.15
2 2 2 0 SCOP 47676 Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
2 2 1 1 SCOP 63570 PABC (PABP) domain
2 2 2 1 SCOP 55455 SRF-like
2 2 2 1 SCOP 109993 VPS9 domain
2 2 2 0 SCOP 49303 beta-Galactosidase/glucuronidase domain
2 2 2 1 SCOP 140984 PTPA-like
2 2 1 1 SCOP 88798 N-terminal, heterodimerisation domain of RBP7 (RpoE)
2 2 2 0 SCOP 101288 L27 domain
2 2 2 0 SCOP 48340 Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
2 2 2 0 SCOP 63451 LEM domain
2 2 1 1 SCOP 143875 ERH-like
2 2 2 0 SCOP 64602 F1 ATPase inhibitor, IF1, C-terminal domain
2 2 2 0 SCOP 47050 VHP, Villin headpiece domain
2 2 2 1 SCOP 47454 A DNA-binding domain in eukaryotic transcription factors
2 2 2 0 SCOP 143791 DUSP-like
2 2 2 1 SCOP 101233 PWI domain
2 1 1 0 SCOP 46585 HR1 repeat
2 1 1 0 SCOP 57262 Leech antihemostatic proteins
2 2 1 0 SCOP 81778 Crustacean CHH/MIH/GIH neurohormone
2 1 1 0 SCOP 54713 Elongation factor Ts (EF-Ts), dimerisation domain
2 1 1 0 SCOP 57277 Granulin repeat
2 1 1 0 SCOP 64158 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
2 2 1 0 SCOP 161060 ATP synthase B chain-like
2 2 2 0 SCOP 47762 PAH2 domain
2 2 2 1 SCOP 103243 KA1-like
2 2 2 1 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 1 0 SCOP 47157 Mitochondrial import receptor subunit Tom20
2 2 2 1 SCOP 50916 Rap30/74 interaction domains
2 2 2 0 SCOP 46942 Elongation factor TFIIS domain 2
2 2 1 0 SCOP 48678 Moesin tail domain
2 2 2 0 SCOP 143575 GAS2 domain-like
2 1 1 0 SCOP 103637 CCHHC domain
2 2 2 0 SCOP 140996 Hermes dimerisation domain
2 1 1 1 SCOP 50886 D-aminopeptidase, middle and C-terminal domains
2 2 2 0 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
2 2 2 1 SCOP 63887 P-domain of calnexin/calreticulin
2 2 1 0 SCOP 51064 Head domain of nucleotide exchange factor GrpE
2 2 1 0 SCOP 140383 BSD domain-like
2 2 1 1 SCOP 160219 AMPKBI-like
2 2 2 0 SCOP 158235 SOCS box-like
2 2 2 1 SCOP 55035 NAD-binding domain of HMG-CoA reductase
2 2 1 1 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
2 2 1 0 SCOP 101821 Aminopeptidase/glucanase lid domain
2 2 2 1 SCOP 47587 Domain of poly(ADP-ribose) polymerase
2 2 2 0 SCOP 101238 XPC-binding domain
2 2 1 0 SCOP 111469 Geminin coiled-coil domain
1 1 1 1 SCOP 74982 Small protein B (SmpB)
1 1 1 0 SCOP 89919 Ribosome-binding factor A, RbfA
1 1 1 0 SCOP 54570 Ribosomal protein S19
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 0 SCOP 57840 Ribosomal protein L36
1 1 1 0 SCOP 64263 Prokaryotic ribosomal protein L17
1 1 1 1 SCOP 64182 DHH phosphoesterases
1 1 1 0 SCOP 74731 Ribosomal protein L20
1 1 1 1 SCOP 55831 Thymidylate synthase/dCMP hydroxymethylase
1 1 1 1 SCOP 53597 Dihydrofolate reductase-like
1 1 1 0 SCOP 141091 L21p-like
1 1 1 0 SCOP 143800 L28p-like
1 1 1 1 SCOP 53748 Phosphoglycerate kinase
1 1 1 0 SCOP 75625 YebC-like
1 1 1 1 SCOP 82649 SufE/NifU
1 1 1 0 SCOP 46992 Ribosomal protein S20
1 1 1 0 SCOP 109998 Triger factor/SurA peptide-binding domain-like
1 1 1 1 SCOP 52943 ATP synthase (F1-ATPase), gamma subunit
1 1 1 0 SCOP 109755 PhoU-like
1 1 1 0 SCOP 82784 OsmC-like
1 1 1 0 SCOP 55194 Ribosome recycling factor, RRF
1 1 1 0 SCOP 55821 YrdC/RibB
1 1 1 1 SCOP 103263 Chorismate synthase, AroC
1 1 1 0 SCOP 56770 HydA/Nqo6-like
1 1 1 1 SCOP 56276 S-adenosylmethionine decarboxylase
1 1 1 0 SCOP 64005 Undecaprenyl diphosphate synthase
1 1 1 0 SCOP 54285 MoaD/ThiS
1 1 1 0 SCOP 101908 Putative isomerase YbhE
1 1 1 0 SCOP 55205 EPT/RTPC-like
1 1 1 0 SCOP 64518 Phase 1 flagellin
1 1 1 0 SCOP 64307 SirA-like
1 1 1 0 SCOP 50685 Barwin-like endoglucanases
1 1 1 0 SCOP 52121 Lumazine synthase
1 1 1 0 SCOP 55129 Ribosomal protein L30p/L7e
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 0 SCOP 54995 Ribosomal protein S6
1 1 1 1 SCOP 55387 Frataxin/Nqo15-like
1 1 1 1 SCOP 48140 Ribosomal protein L19 (L19e)
1 1 1 0 SCOP 144217 CSL zinc finger
1 1 1 0 SCOP 52042 Ribosomal protein L32e
1 1 1 1 SCOP 48613 Heme oxygenase-like
1 1 1 0 SCOP 141678 MAL13P1.257-like
1 1 1 0 SCOP 54575 Ribosomal protein L31e
1 1 1 1 SCOP 69500 DTD-like
1 1 1 0 SCOP 103456 Preprotein translocase SecE subunit
1 1 1 0 SCOP 81524 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
1 1 1 0 SCOP 81411 Mitochondrial cytochrome c oxidase subunit VIa
1 1 1 0 SCOP 81406 Mitochondrial cytochrome c oxidase subunit IV
1 1 1 0 SCOP 63393 RNA polymerase subunits
1 1 1 0 SCOP 81514 Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
1 1 1 0 SCOP 55144 LigT-like
1 1 1 1 SCOP 55248 PCD-like
1 1 1 0 SCOP 144210 Nop10-like SnoRNP
1 1 1 0 SCOP 89895 FYSH domain
1 1 1 0 SCOP 69103 Arp2/3 complex 16 kDa subunit ARPC5
1 1 1 0 SCOP 51645 Malate synthase G
1 1 1 0 SCOP 48662 Ribosomal protein L39e
1 1 1 1 SCOP 69645 Arp2/3 complex subunits
1 1 1 1 SCOP 118203 Vacuolar ATP synthase subunit C
1 1 1 1 SCOP 69060 Arp2/3 complex 21 kDa subunit ARPC3
1 1 1 0 SCOP 81427 Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
1 1 1 0 SCOP 103486 V-type ATP synthase subunit C
1 1 1 0 SCOP 143870 PF0523-like
1 1 1 0 SCOP 103111 Activator of Hsp90 ATPase, Aha1
1 1 1 1 SCOP 46924 RNA polymerase subunit RPB10
1 1 1 0 SCOP 46988 Tubulin chaperone cofactor A
1 1 1 0 SCOP 143447 AMMECR1-like
1 1 1 0 SCOP 103378 2-methylcitrate dehydratase PrpD
1 1 1 0 SCOP 52788 Phosphotyrosine protein phosphatases I
1 1 1 1 SCOP 63562 RPB6/omega subunit-like
1 1 1 0 SCOP 53800 Chelatase
1 1 1 1 SCOP 63965 Precorrin-8X methylmutase CbiC/CobH
1 1 1 1 SCOP 101546 ASF1-like
1 1 1 1 SCOP 55040 Molybdenum cofactor biosynthesis protein C, MoaC
1 1 1 1 SCOP 102405 MCP/YpsA-like
1 1 1 0 SCOP 143243 Nqo5-like
1 1 1 1 SCOP 51717 Dihydropteroate synthetase-like
1 1 1 1 SCOP 51998 PFL-like glycyl radical enzymes
1 1 1 1 SCOP 64438 CNF1/YfiH-like putative cysteine hydrolases
1 1 1 0 SCOP 52255 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
1 1 1 1 SCOP 142754 NadA-like
1 1 1 0 SCOP 75712 Rad50 coiled-coil Zn hook
1 1 1 0 SCOP 101744 Rof/RNase P subunit-like
1 1 1 0 SCOP 54447 ssDNA-binding transcriptional regulator domain
1 1 1 1 SCOP 55166 Hedgehog/DD-peptidase
1 1 1 0 SCOP 158682 TerB-like
1 1 1 1 SCOP 63892 Pyridoxine 5'-phosphate synthase
1 1 1 0 SCOP 54913 GlnB-like
1 1 1 0 SCOP 116842 XseB-like
1 1 1 0 SCOP 54736 ClpS-like
1 1 1 1 SCOP 117856 AF0104/ALDC/Ptd012-like
1 1 1 1 SCOP 103365 Hypothetical protein PH1602
1 1 1 0 SCOP 50993 Peptidase/esterase 'gauge' domain
1 1 1 1 SCOP 54111 Urease, gamma-subunit
1 1 1 1 SCOP 51278 Urease, beta-subunit
1 1 1 0 SCOP 117396 TM1631-like
1 1 1 0 SCOP 160719 gpW/gp25-like
1 1 1 0 SCOP 158997 Trm112p-like
1 1 1 0 SCOP 51391 Thiamin phosphate synthase
1 1 1 0 SCOP 143456 VC0467-like
1 1 1 1 SCOP 48173 Cryptochrome/photolyase FAD-binding domain
1 1 1 0 SCOP 52425 Cryptochrome/photolyase, N-terminal domain
1 1 1 0 SCOP 109910 YgfY-like
1 1 1 0 SCOP 110087 DR1885-like metal-binding protein
1 1 1 0 SCOP 103088 OmpA-like
1 1 1 0 SCOP 49472 Transthyretin (synonym: prealbumin)
1 1 1 1 SCOP 158694 UraD-Like
1 1 1 0 SCOP 110916 Peptidyl-tRNA hydrolase domain-like
1 1 1 0 SCOP 159664 CobE/GbiG C-terminal domain-like
1 1 1 0 SCOP 160909 ATP12-like
1 1 1 0 SCOP 110069 ApaG-like
1 1 1 0 SCOP 159594 XCC0632-like
1 1 1 0 SCOP 159888 YdhG-like
1 1 1 1 SCOP 52335 Methylglyoxal synthase-like
1 1 1 1 SCOP 110581 Indigoidine synthase A-like
1 1 1 0 SCOP 57802 Rubredoxin-like
1 1 1 0 SCOP 50037 C-terminal domain of transcriptional repressors
1 1 1 0 SCOP 111384 OmpH-like
1 1 1 0 SCOP 53182 Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
1 1 1 0 SCOP 64288 Chorismate lyase-like
1 1 1 0 SCOP 101801 Surface presentation of antigens (SPOA)
1 1 1 0 SCOP 53041 Resolvase-like
1 1 1 1 SCOP 141130 Acetamidase/Formamidase-like
1 1 1 1 SCOP 101738 SspB-like
1 1 1 0 SCOP 69786 YggU-like
1 1 1 0 SCOP 81593 Nucleotidyltransferase substrate binding subunit/domain
1 1 1 1 SCOP 142764 YgbK-like
1 1 1 0 SCOP 74863 Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha)
1 1 1 1 SCOP 110395 CutC-like
1 1 1 0 SCOP 74653 TolA/TonB C-terminal domain
1 1 1 0 SCOP 49452 Starch-binding domain-like
1 1 1 0 SCOP 160904 Jann2411-like
1 1 1 0 SCOP 55136 Probable bacterial effector-binding domain
1 1 1 0 SCOP 47175 Cytochromes
1 1 1 0 SCOP 56726 DNA topoisomerase IV, alpha subunit
1 1 1 0 SCOP 69349 Phage fibre proteins
1 1 1 1 SCOP 102546 RbsD-like
1 1 1 0 SCOP 46950 Double-stranded DNA-binding domain
1 1 1 0 SCOP 160350 Rnp2-like
1 1 1 0 SCOP 69819 MTH1598-like
1 1 1 0 SCOP 55287 RPB5-like RNA polymerase subunit
1 1 1 0 SCOP 143437 THUMP domain-like
1 1 1 0 SCOP 116820 Rps17e-like
1 1 1 0 SCOP 160374 RplX-like
1 1 1 1 SCOP 69695 SRP19
1 1 1 1 SCOP 55895 Ribonuclease Rh-like
1 1 1 0 SCOP 53244 MurD-like peptide ligases, peptide-binding domain
1 1 1 0 SCOP 143865 CorA soluble domain-like
1 1 1 1 SCOP 69336 Alpha subunit of glutamate synthase, C-terminal domain
1 1 1 0 SCOP 52794 PTS system IIB component-like
1 1 1 0 SCOP 141318 TM0957-like
1 1 1 1 SCOP 144064 Heme iron utilization protein-like
1 1 1 0 SCOP 141488 YdhA-like
1 1 1 1 SCOP 49772 Ecotin, trypsin inhibitor
1 1 1 0 SCOP 69304 Tricorn protease N-terminal domain
1 1 1 0 SCOP 69989 C-terminal domain of PLC-beta
1 1 1 0 SCOP 103190 Sensory domain-like
1 1 1 0 SCOP 159034 Mib/herc2 domain-like
1 1 1 0 SCOP 58104 Methyl-accepting chemotaxis protein (MCP) signaling domain
1 1 1 0 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 0 SCOP 49468 VHL
1 1 1 0 SCOP 160481 BRK domain-like
1 1 1 0 SCOP 118116 DNA mismatch repair protein MutL
1 1 1 0 SCOP 81336 F1F0 ATP synthase subunit A
1 1 1 0 SCOP 51344 Epsilon subunit of F1F0-ATP synthase N-terminal domain
1 1 1 0 SCOP 160059 PriA/YqbF domain
1 1 1 0 SCOP 158472 HAMP domain-like
1 1 1 0 SCOP 82679 N-utilization substance G protein NusG, N-terminal domain
1 1 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
1 1 1 0 SCOP 49373 Invasin/intimin cell-adhesion fragments
1 1 1 0 SCOP 56037 PheT/TilS domain
1 1 1 0 SCOP 63999 Thiamin pyrophosphokinase, catalytic domain
1 1 1 1 SCOP 57884 Ada DNA repair protein, N-terminal domain (N-Ada 10)
1 1 1 0 SCOP 142984 Nqo1 middle domain-like
1 1 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
1 1 1 1 SCOP 110111 Ctag/Cox11
1 1 1 1 SCOP 143968 UbiD C-terminal domain-like
1 1 1 0 SCOP 51120 beta-Roll
1 1 1 1 SCOP 81891 Poly A polymerase C-terminal region-like
1 1 1 0 SCOP 53920 Fe-only hydrogenase
1 1 1 0 SCOP 48300 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
1 1 1 0 SCOP 110997 Sporulation related repeat
1 1 1 0 SCOP 90002 Hypothetical protein YjiA, C-terminal domain
1 1 1 0 SCOP 47144 HSC20 (HSCB), C-terminal oligomerisation domain
1 1 1 0 SCOP 144083 Magnesium transport protein CorA, transmembrane region
1 1 1 0 SCOP 110836 Hypothetical protein SAV1430
1 1 1 0 SCOP 63418 MurE/MurF N-terminal domain
1 1 1 1 SCOP 63882 MoeA N-terminal region -like
1 1 1 0 SCOP 101278 N-terminal domain of adenylylcyclase associated protein, CAP
1 1 1 0 SCOP 47794 Rad51 N-terminal domain-like
1 1 1 0 SCOP 53155 Methylated DNA-protein cysteine methyltransferase domain
1 1 1 0 SCOP 69979 Eea1 homodimerisation domain
1 1 1 0 SCOP 75516 Pheromone-binding domain of LuxR-like quorum-sensing transcription factors
1 1 1 0 SCOP 54782 Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
1 1 1 0 SCOP 140490 Nqo1C-terminal domain-like
1 1 1 0 SCOP 143975 IlvD/EDD N-terminal domain-like
1 1 1 0 SCOP 144284 Sec2 N-terminal region
1 1 1 0 SCOP 69189 Penicillin-binding protein associated domain
1 1 1 1 SCOP 47446 Signal peptide-binding domain
1 1 1 0 SCOP 54991 Anticodon-binding domain of PheRS
1 1 1 0 SCOP 55271 DNA repair protein MutS, domain I
1 1 1 0 SCOP 116742 eIF2alpha middle domain-like
1 1 1 0 SCOP 47928 N-terminal domain of the delta subunit of the F1F0-ATP synthase
1 1 1 0 SCOP 46596 Eukaryotic DNA topoisomerase I, dispensable insert domain
1 1 1 0 SCOP 48108 Carbamoyl phosphate synthetase, large subunit connection domain
1 1 1 0 SCOP 111357 Mitochondrial ATP synthase coupling factor 6
1 1 1 0 SCOP 69761 GTP cyclohydrolase I feedback regulatory protein, GFRP
1 1 1 0 SCOP 81790 Myosin phosphatase inhibitor 17kDa protein, CPI-17
1 1 1 1 SCOP 89817 Mago nashi protein
1 1 1 0 SCOP 81518 Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
1 1 1 1 SCOP 47798 Barrier-to-autointegration factor, BAF
1 1 1 0 SCOP 81415 Mitochondrial cytochrome c oxidase subunit VIc
1 1 1 0 SCOP 50723 Core binding factor beta, CBF
1 1 1 0 SCOP 57924 Inhibitor of apoptosis (IAP) repeat
1 1 1 1 SCOP 69012 alpha-ketoacid dehydrogenase kinase, N-terminal domain
1 1 1 1 SCOP 55481 N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
1 1 1 0 SCOP 143724 PHP14-like
1 1 1 0 SCOP 161065 ATP synthase D chain-like
1 1 1 1 SCOP 47668 N-terminal domain of cbl (N-cbl)
1 1 1 0 SCOP 81730 beta-catenin-interacting protein ICAT
1 1 1 0 SCOP 140102 ISY1 domain-like
1 1 1 0 SCOP 81531 Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
1 1 1 0 SCOP 116907 Hook domain
1 1 1 1 SCOP 140864 TROVE domain-like
1 1 1 1 SCOP 47216 Proteasome activator
1 1 1 1 SCOP 48479 Cytochrome c oxidase subunit E
1 1 1 0 SCOP 90188 Somatomedin B domain
1 1 1 1 SCOP 142019 Nqo1 FMN-binding domain-like
1 1 1 0 SCOP 55261 GAD domain-like
1 1 1 0 SCOP 109925 Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
1 1 1 0 SCOP 57774 Microbial and mitochondrial ADK, insert "zinc finger" domain
1 1 1 0 SCOP 54529 Mitochondrial glycoprotein MAM33-like
1 1 1 1 SCOP 54511 GFP-like
1 1 1 0 SCOP 110014 Her-1
1 1 1 0 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 1 SCOP 46609 Fe,Mn superoxide dismutase (SOD), N-terminal domain
1 1 1 0 SCOP 144292 occludin/ELL-like
1 1 1 1 SCOP 117018 ATP-dependent DNA ligase DNA-binding domain
1 1 1 1 SCOP 110993 eIF-2-alpha, C-terminal domain
1 1 1 1 SCOP 89942 eEF1-gamma domain
1 1 1 0 SCOP 143885 RGC domain-like
1 1 1 0 SCOP 75615 Siroheme synthase middle domains-like
1 1 1 0 SCOP 102848 NSFL1 (p97 ATPase) cofactor p47, SEP domain
1 1 1 0 SCOP 48168 R1 subunit of ribonucleotide reductase, N-terminal domain
1 1 1 0 SCOP 160527 V-type ATPase subunit E-like
1 1 1 1 SCOP 82215 C-terminal autoproteolytic domain of nucleoporin nup98
1 1 1 0 SCOP 53036 Eukaryotic RPB5 N-terminal domain
1 1 1 1 SCOP 50989 Clathrin heavy-chain terminal domain
1 1 1 1 SCOP 101391 Hsp90 co-chaperone CDC37
1 1 1 0 SCOP 140427 VPS28 C-terminal domain-like
1 1 1 0 SCOP 159065 Dom34/Pelota N-terminal domain-like
1 1 1 1 SCOP 110217 DNA-binding protein LAG-1 (CSL)
1 1 1 0 SCOP 143503 PUG domain-like
1 1 1 0 SCOP 101931 Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain
1 1 1 1 SCOP 69340 C-terminal domain of adenylylcyclase associated protein
1 1 1 1 SCOP 102031 AXH domain
1 1 1 0 SCOP 89000 post-HMGL domain-like
1 1 1 0 SCOP 89811 Amyloid beta a4 protein copper binding domain (domain 2)
1 1 1 1 SCOP 159042 Plus3-like
1 1 1 1 SCOP 88802 Pre-PUA domain
1 1 1 0 SCOP 47655 STAT
1 1 1 1 SCOP 56741 Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
1 1 1 0 SCOP 69687 Integrin beta tail domain
1 1 1 0 SCOP 158553 TAFH domain-like
1 1 1 0 SCOP 68993 FAT domain of focal adhesion kinase
1 1 1 0 SCOP 63862 Thiamin pyrophosphokinase, substrate-binding domain
1 1 1 0 SCOP 55003 PAP/Archaeal CCA-adding enzyme, C-terminal domain
1 1 1 0 SCOP 102860 mRNA decapping enzyme DcpS N-terminal domain
1 1 1 0 SCOP 101420 C-terminal domain of Ku80
1 1 1 0 SCOP 160897 Taf5 N-terminal domain-like
1 1 1 0 SCOP 116878 TrmE connector domain
1 1 1 0 SCOP 64586 C-terminal domain of ProRS
1 1 1 0 SCOP 56491 A heparin-binding domain
1 1 1 0 SCOP 144270 Eferin C-derminal domain-like
1 1 1 1 SCOP 109843 CAPPD, an extracellular domain of amyloid beta A4 protein
1 1 1 0 SCOP 140586 Dcp2 domain-like
1 1 1 0 SCOP 55653 Ribosomal protein L9 C-domain
1 1 1 0 SCOP 75445 D-ribose-5-phosphate isomerase (RpiA), lid domain
1 1 1 0 SCOP 81496 Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
1 1 1 0 SCOP 81502 ISP transmembrane anchor
1 1 1 0 SCOP 111479 Fzo-like conserved region
1 1 1 1 SCOP 63433 Fumarylacetoacetate hydrolase, FAH, N-terminal domain
1 1 1 0 SCOP 47644 Methionine synthase domain
1 1 1 0 SCOP 46929 DNA helicase RuvA subunit, C-terminal domain
1 1 1 0 SCOP 47802 DNA polymerase beta, N-terminal domain-like
1 1 1 1 SCOP 81799 Putative methyltransferase TM0872, insert domain
1 1 1 0 SCOP 161256 RILP dimerisation region
1 1 1 0 SCOP 109728 Hypothetical protein AF0491, middle domain
1 1 1 0 SCOP 46915 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
1 1 1 0 SCOP 103661 Proline/betaine transporter ProP, C-terminal cytoplasmic domain
1 1 1 0 SCOP 109736 FGAM synthase PurL, linker domain
1 1 1 0 SCOP 160996 HI0933 insert domain-like
1 1 1 0 SCOP 57770 Methionyl-tRNA synthetase (MetRS), Zn-domain
1 1 1 0 SCOP 140125 Rabenosyn-5 Rab-binding domain-like
1 1 1 0 SCOP 101283 GRIP domain
1 1 1 0 SCOP 103652 G protein-binding domain
1 1 1 0 SCOP 109880 A middle domain of Talin 1
1 1 1 0 SCOP 140482 MAST3 pre-PK domain-like
1 1 1 0 SCOP 158230 PRP4-like
1 1 1 0 SCOP 158851 Lag-3 N-terminal region

Jump to [ Top of page · Assignment statistics ]


The following superfamilies have one or more weak hits:

SCOP superfamily Zinc finger domain of DNA polymerase-alpha
SCOP superfamily Mollusk pheromone
SCOP superfamily DPY module
SCOP superfamily DNA-binding protein Tfx
SCOP superfamily AbrB/MazE/MraZ-like
SCOP superfamily Gametocyte protein Pfg27
SCOP superfamily ssDNA viruses
SCOP superfamily Positive stranded ssRNA viruses
SCOP superfamily Apolipoprotein A-II
SCOP superfamily GIY-YIG endonuclease
SCOP superfamily Probable GTPase Der, C-terminal domain
SCOP superfamily BAH domain
SCOP superfamily N-terminal domain of bifunctional PutA protein
SCOP superfamily Double Clp-N motif
SCOP superfamily Helical scaffold and wing domains of SecA
SCOP superfamily BRCA2 tower domain
SCOP superfamily SopE-like GEF domain
SCOP superfamily RuBisCo LSMT C-terminal, substrate-binding domain
SCOP superfamily F1F0 ATP synthase subunit B, membrane domain
SCOP superfamily Photosystem I subunits PsaA/PsaB
SCOP superfamily Bacterial photosystem II reaction centre, L and M subunits
SCOP superfamily Bacterial ba3 type cytochrome c oxidase subunit IIa
SCOP superfamily Bacterial aa3 type cytochrome c oxidase subunit IV
SCOP superfamily Cytochrome c oxidase subunit II-like, transmembrane region
SCOP superfamily Cytochrome c oxidase subunit III-like
SCOP superfamily Cytochrome c oxidase subunit I-like
SCOP superfamily Mitochondrial cytochrome c oxidase subunit VIIa
SCOP superfamily Fumarate reductase respiratory complex transmembrane subunits
SCOP superfamily Gated mechanosensitive channel
SCOP superfamily H-NS histone-like proteins
SCOP superfamily Chemotaxis phosphatase CheZ
SCOP superfamily Mitotic arrest deficient-like 1, Mad1
SCOP superfamily Rotavirus NSP2 fragment, C-terminal domain
SCOP superfamily Dipeptidyl peptidase I (cathepsin C), exclusion domain
SCOP superfamily V-region of surface antigen I/II (SA I/II, PAC)
SCOP superfamily Translin
SCOP superfamily Variable surface antigen VlsE
SCOP superfamily Head and neck region of the ectodomain of NDV fusion glycoprotein
SCOP superfamily Membrane penetration protein mu1
SCOP superfamily NSP3 homodimer
SCOP superfamily Argininosuccinate synthetase, C-terminal domain
SCOP superfamily Thymidylate synthase-complementing protein Thy1
SCOP superfamily IpsF-like
SCOP superfamily Cell wall binding repeat
SCOP superfamily Hypothetical protein MTH865
SCOP superfamily RecG, N-terminal domain
SCOP superfamily Protein-L-isoaspartyl O-methyltransferase, C-terminal domain
SCOP superfamily Recombination endonuclease VII, C-terminal and dimerization domains
SCOP superfamily Satiety factor CART (cocaine and amphetamine regulated transcript)
SCOP superfamily YlxR-like
SCOP superfamily Sortase
SCOP superfamily Outer surface protein C (OspC)
SCOP superfamily BAG domain
SCOP superfamily Bacterial hemolysins
SCOP superfamily Colicin Ia, N-terminal domain
SCOP superfamily Influenza hemagglutinin (stalk)
SCOP superfamily N-terminal coiled coil domain from apc
SCOP superfamily Fibritin
SCOP superfamily Outer membrane lipoprotein
SCOP superfamily Multimerization domain of the phosphoprotein from sendai virus
SCOP superfamily Rotavirus nonstructural proteins
SCOP superfamily XRCC4, C-terminal oligomerization domain
SCOP superfamily Coiled-coil dimerization domain from cortexillin I
SCOP superfamily Fibrinogen coiled-coil and central regions
SCOP superfamily Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
SCOP superfamily Hypothetical protein MTH1184
SCOP superfamily HIPIP (high potential iron protein)
SCOP superfamily HIV-1 VPU cytoplasmic domain
SCOP superfamily Carboxypeptidase inhibitor
SCOP superfamily TNF receptor-like
SCOP superfamily Crisp domain-like
SCOP superfamily Crambin-like
SCOP superfamily Bowman-Birk inhibitor, BBI
SCOP superfamily Scorpion toxin-like
SCOP superfamily Plant lectins/antimicrobial peptides
SCOP superfamily Viral glycoprotein, central and dimerisation domains
SCOP superfamily Leukocidin-like
SCOP superfamily delta-Endotoxin (insectocide), N-terminal domain
SCOP superfamily DNA primase core
SCOP superfamily Nitric oxide (NO) synthase oxygenase domain
SCOP superfamily gp120 core
SCOP superfamily ADC synthase
SCOP superfamily Methenyltetrahydromethanopterin cyclohydrolase
SCOP superfamily Monooxygenase (hydroxylase) regulatory protein
SCOP superfamily N-acetylmuramoyl-L-alanine amidase-like
SCOP superfamily CytB endotoxin-like
SCOP superfamily Homing endonucleases
SCOP superfamily Origin of replication-binding domain, RBD-like
SCOP superfamily RNA bacteriophage capsid protein
SCOP superfamily Formiminotransferase domain of formiminotransferase-cyclodeaminase.
SCOP superfamily Formylmethanofuran:tetrahydromethanopterin formyltransferase
SCOP superfamily CheY-binding domain of CheA
SCOP superfamily Viral DNA-binding domain
SCOP superfamily MHC antigen-recognition domain
SCOP superfamily Amine oxidase N-terminal region
SCOP superfamily Interleukin 8-like chemokines
SCOP superfamily RNase A-like
SCOP superfamily FucI/AraA N-terminal and middle domains
SCOP superfamily Aspartate/ornithine carbamoyltransferase
SCOP superfamily Peptidyl-tRNA hydrolase-like
SCOP superfamily DNA repair protein MutS, domain II
SCOP superfamily TolB, N-terminal domain
SCOP superfamily Methylesterase CheB, C-terminal domain
SCOP superfamily RuBisCo, C-terminal domain
SCOP superfamily E2 regulatory, transactivation domain
SCOP superfamily TRAP-like
SCOP superfamily An insect antifreeze protein
SCOP superfamily Insect cysteine-rich antifreeze protein
SCOP superfamily alpha-D-mannose-specific plant lectins
SCOP superfamily Mannose-binding lectins
SCOP superfamily delta-Endotoxin (insectocide), middle domain
SCOP superfamily Carbohydrate binding domain
SCOP superfamily Nitrous oxide reductase, N-terminal domain
SCOP superfamily Sialidases
SCOP superfamily Oncogene products
SCOP superfamily Herpes virus serine proteinase, assemblin
SCOP superfamily DNA-binding domain of retroviral integrase
SCOP superfamily Myosin S1 fragment, N-terminal domain
SCOP superfamily TNF-like
SCOP superfamily ENV polyprotein, receptor-binding domain
SCOP superfamily gamma-Crystallin-like
SCOP superfamily Neurophysin II
SCOP superfamily Cna protein B-type domain
SCOP superfamily Cytochrome f, large domain
SCOP superfamily Bacterial adhesins
SCOP superfamily Carbohydrate-binding domain
SCOP superfamily Multiheme cytochromes
SCOP superfamily Fungal elicitin
SCOP superfamily Chorismate mutase II
SCOP superfamily Serum albumin-like
SCOP superfamily Phospholipase C/P1 nuclease
SCOP superfamily Lipoxigenase
SCOP superfamily Bacterial muramidases
SCOP superfamily Aldehyde ferredoxin oxidoreductase, C-terminal domains
SCOP superfamily Class II MHC-associated invariant chain ectoplasmic trimerization domain
SCOP superfamily Uteroglobin-like
SCOP superfamily Transcription factor STAT-4 N-domain
SCOP superfamily LigA subunit of an aromatic-ring-opening dioxygenase LigAB
SCOP superfamily Hemocyanin, N-terminal domain
SCOP superfamily Scaffolding protein gpD of bacteriophage procapsid
SCOP superfamily N-terminal domain of DnaB helicase
SCOP superfamily Retrovirus capsid protein, N-terminal core domain
SCOP superfamily Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
SCOP superfamily Apolipophorin-III
SCOP superfamily Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
SCOP superfamily Chemotaxis receptor methyltransferase CheR, N-terminal domain
SCOP superfamily IHF-like DNA-binding proteins
SCOP superfamily Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
SCOP superfamily Anaphylotoxins (complement system)
SCOP superfamily Insect pheromone/odorant-binding proteins
SCOP superfamily Colicin E immunity proteins
SCOP superfamily 4-helical cytokines
SCOP superfamily Histidine-containing phosphotransfer domain, HPT domain
SCOP superfamily TMV-like viral coat proteins
SCOP superfamily Aspartate receptor, ligand-binding domain
SCOP superfamily Apolipoprotein
SCOP superfamily Methane monooxygenase hydrolase, gamma subunit
SCOP superfamily Fertilization protein
SCOP superfamily Cysteine alpha-hairpin motif
SCOP superfamily N-terminal Zn binding domain of HIV integrase
SCOP superfamily Epsilon subunit of F1F0-ATP synthase C-terminal domain
SCOP superfamily C-terminal UvrC-binding domain of UvrB
SCOP superfamily GreA transcript cleavage protein, N-terminal domain
SCOP superfamily PspA lactotransferrin-binding region
SCOP superfamily Gam-like
SCOP superfamily Zinc hairpin stack
SCOP superfamily E6 C-terminal domain-like
SCOP superfamily CHY zinc finger-like
SCOP superfamily YfgJ-like
SCOP superfamily MAPEG domain-like
SCOP superfamily Photosystem II antenna protein-like
SCOP superfamily PsbZ-like
SCOP superfamily Photosystem II 10 kDa phosphoprotein PsbH
SCOP superfamily AF1531-like
SCOP superfamily MalF N-terminal region-like
SCOP superfamily Poly(A) polymerase catalytic subunit-like
SCOP superfamily YacF-like
SCOP superfamily Api92-like
SCOP superfamily FlhC-like
SCOP superfamily YehR-like
SCOP superfamily SMI1/KNR4-like
SCOP superfamily MbtH-like
SCOP superfamily YueI-like
SCOP superfamily NMB0513-like
SCOP superfamily BLRF2-like
SCOP superfamily Bacterial polysaccharide co-polymerase-like
SCOP superfamily Shew3726-like
SCOP superfamily NMB0488-like
SCOP superfamily CPE0013-like
SCOP superfamily NRDP1 C-terminal domain-like
SCOP superfamily MM3350-like
SCOP superfamily PH1570-like
SCOP superfamily YdgH-like
SCOP superfamily XkdW-like
SCOP superfamily Cgl1923-like
SCOP superfamily PA1994-like
SCOP superfamily SO1590-like
SCOP superfamily FomD-like
SCOP superfamily YkvR-like
SCOP superfamily YopX-like
SCOP superfamily NEAT domain-like
SCOP superfamily Lipase chaperone-like
SCOP superfamily PMT central region-like
SCOP superfamily AGR C 984p-like
SCOP superfamily LanC-like
SCOP superfamily PSPTO4464-like
SCOP superfamily MtlR-like
SCOP superfamily YheA/YmcA-like
SCOP superfamily BH3980-like
SCOP superfamily FLJ32549 domain-like
SCOP superfamily PG0775 C-terminal domain-like
SCOP superfamily TM1646-like
SCOP superfamily YvfG-like
SCOP superfamily MPN010-like
SCOP superfamily Viral leader polypeptide zinc finger
SCOP superfamily Peptidoglycan deacetylase N-terminal noncatalytic region
SCOP superfamily XisI-like
SCOP superfamily Phage tail protein-like
SCOP superfamily STIV B116-like
SCOP superfamily YojJ-like
SCOP superfamily Transposase IS200-like
SCOP superfamily L35p-like
SCOP superfamily YktB/PF0168-like
SCOP superfamily CinA-like
SCOP superfamily CofD-like
SCOP superfamily LD-carboxypeptidase A C-terminal domain-like
SCOP superfamily HisI-like
SCOP superfamily Extracellular hemoglobin linker subunit, receptor domain
SCOP superfamily Kinase-associated protein B-like
SCOP superfamily Glu-tRNAGln amidotransferase C subunit
SCOP superfamily Duffy binding domain-like
SCOP superfamily PriB N-terminal domain-like
SCOP superfamily Pseudo ankyrin repeat-like
SCOP superfamily YidB-like
SCOP superfamily PA2201 C-terminal domain-like
SCOP superfamily IpaD-like
SCOP superfamily SP0561-like
SCOP superfamily Type III secretion system domain
SCOP superfamily HIV integrase-binding domain
SCOP superfamily FlgN-like
SCOP superfamily BAS1536-like
SCOP superfamily EsxAB dimer-like
SCOP superfamily MW0975(SA0943)-like
SCOP superfamily Vng1086c-like
SCOP superfamily MxiH-like
SCOP superfamily Calcyclin-binding protein-like
SCOP superfamily Synuclein
SCOP superfamily Vasodilator-stimulated phosphoprotein, VASP, tetramerisation domain
SCOP superfamily Viral ssDNA binding protein
SCOP superfamily YehU-like
SCOP superfamily YbeD/HP0495-like
SCOP superfamily YbjQ-like
SCOP superfamily GTF2I-like repeat
SCOP superfamily Flagellar hook protein flgE
SCOP superfamily Putative glucosidase YicI, C-terminal domain
SCOP superfamily DNA primase DnaG, C-terminal domain
SCOP superfamily RNA-binding protein She2p
SCOP superfamily YugE-like
SCOP superfamily DNA methylase specificity domain
SCOP superfamily Coronavirus S2 glycoprotein
SCOP superfamily YAP1 redox domain
SCOP superfamily Pollen allergen ole e 6
SCOP superfamily Tsx-like channel
SCOP superfamily Recombination protein RecR
SCOP superfamily YggX-like
SCOP superfamily Hypothetical protein MTH677
SCOP superfamily ThiG-like
SCOP superfamily Coronavirus RNA-binding domain
SCOP superfamily Oligoxyloglucan reducing end-specific cellobiohydrolase
SCOP superfamily DinB/YfiT-like putative metalloenzymes
SCOP superfamily Cag-Z
SCOP superfamily Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain
SCOP superfamily DEK C-terminal domain
SCOP superfamily SBT domain
SCOP superfamily Necrosis inducing protein 1, NIP1
SCOP superfamily Respiratory nitrate reductase 1 gamma chain
SCOP superfamily 39 kda initiator binding protein, IBP39, C-terminal domains
SCOP superfamily Virulence-associated V antigen
SCOP superfamily Antivirulence factor
SCOP superfamily Tombusvirus P19 core protein, VP19
SCOP superfamily Holliday junction resolvase RusA
SCOP superfamily Hypothetical protein YoaG
SCOP superfamily Cell division protein ZapA-like
SCOP superfamily NIF3 (NGG1p interacting factor 3)-like
SCOP superfamily Alpha-2,3/8-sialyltransferase CstII
SCOP superfamily F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)
SCOP superfamily Stabilizer of iron transporter SufD
SCOP superfamily NAC domain
SCOP superfamily DNA-binding pseudobarrel domain
SCOP superfamily Hypothetical protein ST1625
SCOP superfamily all-alpha NTP pyrophosphatases
SCOP superfamily Superantigen MAM
SCOP superfamily YcfC-like
SCOP superfamily HAND domain of the nucleosome remodeling ATPase ISWI
SCOP superfamily KaiA/RbsU domain
SCOP superfamily Nonstructural protein ns2, Nep, M1-binding domain
SCOP superfamily Oxygen-evolving enhancer protein 3,
SCOP superfamily Typo IV secretion system protein TraC
SCOP superfamily Plant proteinase inhibitors

Jump to [ Top of page · Assignment statistics ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.