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Candidatus Phytoplasma solani tobfin_28409 superfamily assignments

Taxonomy
Taxonomy browser entry

Bacteria; Terrabacteria group; Tenericutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Candidatus Phytoplasma; 16SrXII (Stolbur group); Candidatus Phytoplasma solani; Candidatus Phytoplasma solani 284/09

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Fasta format sequences
Domain assignments


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Assignment statistics

Sequences: 520 total
352 (68 %) with assignment
290 average length
66 % amino acid coverage
Domains: 536 total
249 unique superfamilies
124 unique families
281 average length
2.2 average superfamily size
54 % formed by duplication
Domain combinations: 129 domain pairs
246 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies

76 70 29 8 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
15 14 8 1 SCOP 50249 Nucleic acid-binding proteins
12 12 10 1 SCOP 52374 Nucleotidylyl transferase
12 12 9 2 SCOP 55681 Class II aaRS and biotin synthetases
11 11 3 0 SCOP 161098 MetI-like
9 9 3 1 SCOP 56784 HAD-like
9 9 3 0 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
9 9 4 0 SCOP 53850 Periplasmic binding protein-like II
8 7 6 4 SCOP 54211 Ribosomal protein S5 domain 2-like
7 7 5 0 SCOP 53098 Ribonuclease H-like
7 6 6 2 SCOP 50447 Translation proteins
6 4 4 2 SCOP 53067 Actin-like ATPase domain
6 6 5 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
6 6 4 1 SCOP 140990 FtsH protease domain-like
5 5 4 1 SCOP 50104 Translation proteins SH3-like domain
5 5 4 1 SCOP 109604 HD-domain/PDEase-like
5 5 2 0 SCOP 81665 Calcium ATPase, transmembrane domain M
5 5 2 0 SCOP 81653 Calcium ATPase, transduction domain A
4 3 3 0 SCOP 51905 FAD/NAD(P)-binding domain
4 4 2 3 SCOP 55120 Pseudouridine synthase
4 4 3 1 SCOP 55174 Alpha-L RNA-binding motif
4 4 1 0 SCOP 56672 DNA/RNA polymerases
4 4 3 1 SCOP 52954 Class II aaRS ABD-related
4 3 3 0 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
4 4 1 0 SCOP 48024 N-terminal domain of DnaB helicase
4 2 2 1 SCOP 54980 EF-G C-terminal domain-like
3 3 1 0 SCOP 57829 Zn-binding ribosomal proteins
3 3 3 2 SCOP 51735 NAD(P)-binding Rossmann-fold domains
3 3 3 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
3 3 2 0 SCOP 64182 DHH phosphoesterases
3 3 2 2 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
3 3 2 0 SCOP 82649 SufE/NifU
3 3 2 2 SCOP 75217 alpha/beta knot
3 3 3 1 SCOP 52402 Adenine nucleotide alpha hydrolases-like
3 3 2 1 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
3 3 3 2 SCOP 53187 Zn-dependent exopeptidases
3 3 1 0 SCOP 116734 DNA methylase specificity domain
3 1 1 0 SCOP 55979 DNA clamp
3 3 2 1 SCOP 48019 post-AAA+ oligomerization domain-like
3 3 1 0 SCOP 81660 Metal cation-transporting ATPase, ATP-binding domain N
3 3 3 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
2 2 2 1 SCOP 52317 Class I glutamine amidotransferase-like
2 2 1 0 SCOP 52833 Thioredoxin-like
2 2 1 0 SCOP 54197 HIT-like
2 2 1 1 SCOP 53137 Translational machinery components
2 2 2 1 SCOP 55920 Creatinase/aminopeptidase
2 2 2 1 SCOP 46946 S13-like H2TH domain
2 2 2 0 SCOP 46785 "Winged helix" DNA-binding domain
2 2 1 0 SCOP 143800 L28p-like
2 2 1 1 SCOP 75620 Release factor
2 2 1 1 SCOP 82549 DAK1/DegV-like
2 2 1 2 SCOP 53383 PLP-dependent transferases
2 2 1 0 SCOP 47729 IHF-like DNA-binding proteins
2 2 2 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
2 2 1 1 SCOP 111283 Putative modulator of DNA gyrase, PmbA/TldD
2 2 1 0 SCOP 56281 Metallo-hydrolase/oxidoreductase
2 2 1 0 SCOP 81345 ABC transporter involved in vitamin B12 uptake, BtuC
2 2 1 0 SCOP 55315 L30e-like
2 2 2 0 SCOP 54534 FKBP-like
2 2 2 0 SCOP 57783 Zinc beta-ribbon
2 2 2 2 SCOP 81301 Nucleotidyltransferase
2 1 1 0 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
2 2 1 1 SCOP 160537 SpoVG-like
2 2 1 0 SCOP 50331 MOP-like
2 2 2 0 SCOP 47781 RuvA domain 2-like
2 2 2 1 SCOP 55186 ThrRS/AlaRS common domain
2 2 2 1 SCOP 55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
2 2 1 0 SCOP 90123 ABC transporter transmembrane region
2 2 1 0 SCOP 46589 tRNA-binding arm
2 2 2 1 SCOP 56719 Type II DNA topoisomerase
2 2 2 1 SCOP 56037 PheT/TilS domain
2 2 2 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
2 2 2 0 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
2 2 2 0 SCOP 46600 C-terminal UvrC-binding domain of UvrB
2 2 2 0 SCOP 54768 dsRNA-binding domain-like
2 1 1 1 SCOP 56053 Ribosomal protein L6
2 2 2 1 SCOP 81271 TGS-like
2 1 1 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
2 1 1 0 SCOP 55666 Ribonuclease PH domain 2-like
1 1 1 1 SCOP 51556 Metallo-dependent hydrolases
1 1 1 1 SCOP 56731 DNA primase core
1 1 1 1 SCOP 51569 Aldolase
1 1 1 0 SCOP 48013 NusB-like
1 1 1 0 SCOP 53927 Cytidine deaminase-like
1 1 1 0 SCOP 53790 Tetrapyrrole methylase
1 1 1 1 SCOP 74982 Small protein B (SmpB)
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 0 SCOP 53178 Peptidyl-tRNA hydrolase-like
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 0 SCOP 46911 Ribosomal protein S18
1 1 1 1 SCOP 52141 Uracil-DNA glycosylase-like
1 1 1 1 SCOP 143597 YojJ-like
1 1 1 1 SCOP 53697 SIS domain
1 1 1 0 SCOP 82607 YbaB-like
1 1 1 0 SCOP 64376 YlxR-like
1 1 1 0 SCOP 89919 Ribosome-binding factor A, RbfA
1 1 1 1 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
1 1 1 1 SCOP 54570 Ribosomal protein S19
1 1 1 1 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 1 SCOP 55282 RL5-like
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 1 SCOP 52080 Ribosomal proteins L15p and L18e
1 1 1 0 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 0 SCOP 57840 Ribosomal protein L36
1 1 1 0 SCOP 64263 Prokaryotic ribosomal protein L17
1 1 1 0 SCOP 143034 L35p-like
1 1 1 1 SCOP 74731 Ribosomal protein L20
1 1 1 0 SCOP 56300 Metallo-dependent phosphatases
1 1 1 0 SCOP 56214 4'-phosphopantetheinyl transferase
1 1 1 0 SCOP 69593 Glycerol-3-phosphate (1)-acyltransferase
1 1 1 1 SCOP 53784 Phosphofructokinase
1 1 1 1 SCOP 55831 Thymidylate synthase/dCMP hydroxymethylase
1 1 1 0 SCOP 53597 Dihydrofolate reductase-like
1 1 1 1 SCOP 47240 Ferritin-like
1 1 1 0 SCOP 52218 Flavoproteins
1 1 1 1 SCOP 141091 L21p-like
1 1 1 0 SCOP 118010 TM1457-like
1 1 1 0 SCOP 110324 Ribosomal L27 protein-like
1 1 1 1 SCOP 51658 Xylose isomerase-like
1 1 1 0 SCOP 47336 ACP-like
1 1 1 1 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
1 1 1 1 SCOP 53748 Phosphoglycerate kinase
1 1 1 1 SCOP 50324 Inorganic pyrophosphatase
1 1 1 0 SCOP 52980 Restriction endonuclease-like
1 1 1 0 SCOP 160369 Ribosomal protein L10-like
1 1 1 0 SCOP 46992 Ribosomal protein S20
1 1 1 0 SCOP 109998 Triger factor/SurA peptide-binding domain-like
1 1 1 0 SCOP 50129 GroES-like
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 0 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 0 SCOP 82784 OsmC-like
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 1 SCOP 53633 Carbamate kinase-like
1 1 1 1 SCOP 55194 Ribosome recycling factor, RRF
1 1 1 0 SCOP 54565 Ribosomal protein S16
1 1 1 0 SCOP 52821 Rhodanese/Cell cycle control phosphatase
1 1 1 0 SCOP 55821 YrdC/RibB
1 1 1 0 SCOP 51283 dUTPase-like
1 1 1 1 SCOP 50715 Ribosomal protein L25-like
1 1 1 1 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
1 1 1 0 SCOP 55811 Nudix
1 1 1 0 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 0 SCOP 46689 Homeodomain-like
1 1 1 0 SCOP 55129 Ribosomal protein L30p/L7e
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 0 SCOP 54995 Ribosomal protein S6
1 1 1 0 SCOP 49764 HSP20-like chaperones
1 1 1 0 SCOP 52949 Macro domain-like
1 1 1 0 SCOP 55469 FMN-dependent nitroreductase-like
1 1 1 1 SCOP 88723 PIN domain-like
1 1 1 1 SCOP 53649 Alkaline phosphatase-like
1 1 1 0 SCOP 56317 Carbon-nitrogen hydrolase
1 1 1 0 SCOP 51306 LexA/Signal peptidase
1 1 1 0 SCOP 55781 GAF domain-like
1 1 1 0 SCOP 55257 RBP11-like subunits of RNA polymerase
1 1 1 0 SCOP 63562 RPB6/omega subunit-like
1 1 1 0 SCOP 54631 CBS-domain pair
1 1 1 1 SCOP 51998 PFL-like glycyl radical enzymes
1 1 1 0 SCOP 46955 Putative DNA-binding domain
1 1 1 0 SCOP 50494 Trypsin-like serine proteases
1 1 1 1 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
1 1 1 0 SCOP 82771 GIY-YIG endonuclease
1 1 1 1 SCOP 53807 "Helical backbone" metal receptor
1 1 1 0 SCOP 51230 Single hybrid motif
1 1 1 1 SCOP 88946 Sigma2 domain of RNA polymerase sigma factors
1 1 1 0 SCOP 89550 PHP domain-like
1 1 1 0 SCOP 54913 GlnB-like
1 1 1 0 SCOP 54736 ClpS-like
1 1 1 0 SCOP 50800 PK beta-barrel domain-like
1 1 1 0 SCOP 69065 RNase III domain-like
1 1 1 0 SCOP 55200 Translation initiation factor IF3, C-terminal domain
1 1 1 0 SCOP 88697 PUA domain-like
1 1 1 0 SCOP 81330 Gated mechanosensitive channel
1 1 1 0 SCOP 48295 TrpR-like
1 1 1 0 SCOP 101473 DhaL-like
1 1 1 1 SCOP 51604 Enolase C-terminal domain-like
1 1 1 1 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
1 1 1 0 SCOP 46565 Chaperone J-domain
1 1 1 0 SCOP 143437 THUMP domain-like
1 1 1 1 SCOP 52777 CoA-dependent acyltransferases
1 1 1 0 SCOP 53092 Creatinase/prolidase N-terminal domain
1 1 1 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
1 1 1 0 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
1 1 1 0 SCOP 48592 GroEL equatorial domain-like
1 1 1 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
1 1 1 0 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
1 1 1 0 SCOP 56176 FAD-binding/transporter-associated domain-like
1 1 1 0 SCOP 55608 Homing endonucleases
1 1 1 0 SCOP 82114 Riboflavin kinase-like
1 1 1 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 1 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
1 1 1 1 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 0 SCOP 52922 TK C-terminal domain-like
1 1 1 0 SCOP 52935 PK C-terminal domain-like
1 1 1 0 SCOP 47789 C-terminal domain of RNA polymerase alpha subunit
1 1 1 0 SCOP 55658 L9 N-domain-like
1 1 1 0 SCOP 82679 N-utilization substance G protein NusG, N-terminal domain
1 1 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
1 1 1 0 SCOP 158499 DnaD domain-like
1 1 1 0 SCOP 58014 Coiled-coil domain of nucleotide exchange factor GrpE
1 1 1 1 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
1 1 1 1 SCOP 54719 Fe,Mn superoxide dismutase (SOD), C-terminal domain
1 1 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
1 1 1 1 SCOP 54826 Enolase N-terminal domain-like
1 1 1 1 SCOP 52029 GroEL apical domain-like
1 1 1 0 SCOP 81891 Poly A polymerase C-terminal region-like
1 1 1 0 SCOP 68912 Rho N-terminal domain-like
1 1 1 1 SCOP 101904 GyrA/ParC C-terminal domain-like
1 1 1 0 SCOP 48300 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
1 1 1 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
1 1 1 0 SCOP 46934 UBA-like
1 1 1 0 SCOP 52113 BRCT domain
1 1 1 0 SCOP 81624 N-terminal domain of MutM-like DNA repair proteins
1 1 1 0 SCOP 54752 RecA protein, C-terminal domain
1 1 1 0 SCOP 100934 Heat shock protein 70kD (HSP70), C-terminal subdomain
1 1 1 0 SCOP 102735 Trigger factor ribosome-binding domain
1 1 1 0 SCOP 55031 Bacterial exopeptidase dimerisation domain
1 1 1 0 SCOP 46557 GreA transcript cleavage protein, N-terminal domain
1 1 1 0 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
1 1 1 0 SCOP 47446 Signal peptide-binding domain
1 1 1 0 SCOP 54991 Anticodon-binding domain of PheRS
1 1 1 1 SCOP 82051 Obg GTP-binding protein N-terminal domain
1 1 1 0 SCOP 55261 GAD domain-like
1 1 1 0 SCOP 54713 Elongation factor Ts (EF-Ts), dimerisation domain
1 1 1 1 SCOP 64158 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
1 1 1 0 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 1 SCOP 46609 Fe,Mn superoxide dismutase (SOD), N-terminal domain
1 1 1 1 SCOP 48168 R1 subunit of ribonucleotide reductase, N-terminal domain
1 1 1 1 SCOP 81886 Helical scaffold and wing domains of SecA
1 1 1 0 SCOP 54849 GroEL-intermediate domain like
1 1 1 0 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 64586 C-terminal domain of ProRS
1 1 1 0 SCOP 51064 Head domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 47005 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
1 1 1 0 SCOP 55653 Ribosomal protein L9 C-domain
1 1 1 1 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 0 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 1 SCOP 101821 Aminopeptidase/glucanase lid domain
1 1 1 0 SCOP 54364 Translation initiation factor IF3, N-terminal domain
1 1 1 0 SCOP 69705 Transcription factor NusA, N-terminal domain
1 1 1 1 SCOP 81767 Pre-protein crosslinking domain of SecA
1 1 1 0 SCOP 81799 Putative methyltransferase TM0872, insert domain
1 1 1 0 SCOP 102741 Obg GTP-binding protein C-terminal domain
1 1 1 0 SCOP 103652 G protein-binding domain

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The following superfamilies have one or more weak hits:

SCOP superfamily Myosin rod fragments
SCOP superfamily BAH domain
SCOP superfamily Cytochrome c oxidase subunit I-like
SCOP superfamily Family A G protein-coupled receptor-like
SCOP superfamily Tricorn protease N-terminal domain
SCOP superfamily F1 ATPase inhibitor, IF1, C-terminal domain
SCOP superfamily Photosystem I subunit PsaD
SCOP superfamily Fibritin
SCOP superfamily Multimerization domain of the phosphoprotein from sendai virus
SCOP superfamily Tropomyosin
SCOP superfamily Inhibitor of apoptosis (IAP) repeat
SCOP superfamily Nucleotide cyclase
SCOP superfamily Chitinase insertion domain
SCOP superfamily Thiolase-like
SCOP superfamily Ribokinase-like
SCOP superfamily Phosphoglycerate mutase-like
SCOP superfamily Nicotinate/Quinolinate PRTase C-terminal domain-like
SCOP superfamily (Trans)glycosidases
SCOP superfamily Rap30/74 interaction domains
SCOP superfamily ADC-like
SCOP superfamily Cytochrome P450
SCOP superfamily t-snare proteins
SCOP superfamily EF-hand
SCOP superfamily RAP domain-like
SCOP superfamily Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
SCOP superfamily PspA lactotransferrin-binding region
SCOP superfamily AF1531-like
SCOP superfamily MalF N-terminal region-like
SCOP superfamily PH0156-like
SCOP superfamily NSP3A-like
SCOP superfamily Lipase chaperone-like
SCOP superfamily IpaD-like
SCOP superfamily MAST3 pre-PK domain-like
SCOP superfamily Cag-Z
SCOP superfamily BAR/IMD domain-like
SCOP superfamily Eukaryotic initiation factor 4f subunit eIF4g, eIF4e-binding domain
SCOP superfamily Staphylocoagulase
SCOP superfamily Lesion bypass DNA polymerase (Y-family), little finger domain

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