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Eubacterium siraeum family assignments

Taxonomy
Taxonomy browser entry

Bacteria; Terrabacteria group; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium; [Eubacterium] siraeum

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Fasta format sequences
Domain assignments


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Assignment statistics

Sequences: 2343 total
1368 (58 %) with assignment
306 average length
55 % amino acid coverage
Domains: 2000 total
542 unique superfamilies
317 unique families
286 average length
3.7 average superfamily size
73 % formed by duplication
Domain combinations: 334 domain pairs
751 unique architectures

Jump to [ Top of page · Assignment statistics ]

Family assignments

Domains

Proteins

SCOP link

Families

47 47 SCOP 52686 ABC transporter ATPase domain-like
13 13 SCOP 51487 beta-glycanases
11 7 SCOP 81268 Tandem AAA-ATPase domain
10 9 SCOP 52592 G proteins
10 10 SCOP 55682 Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
10 7 SCOP 81269 Extended AAA-ATPase domain
9 9 SCOP 51446 Amylase, catalytic domain
7 7 SCOP 52375 Class I aminoacyl-tRNA synthetases (RS), catalytic domain
7 7 SCOP 53851 Phosphate binding protein-like
6 6 SCOP 52670 RecA protein-like (ATPase-domain)
6 3 SCOP 53068 Actin/HSP70
6 4 SCOP 56067 BC ATP-binding domain-like
6 6 SCOP 58105 Methyl-accepting chemotaxis protein (MCP) signaling domain
5 5 SCOP 51751 Tyrosine-dependent oxidoreductases
5 3 SCOP 52441 BC N-terminal domain-like
5 5 SCOP 52652 Nitrogenase iron protein-like
5 5 SCOP 53272 Phosphoribosyltransferases (PRTases)
4 4 SCOP 52318 Class I glutamine amidotransferases (GAT)
4 4 SCOP 53204 Bacterial dinuclear zinc exopeptidases
4 4 SCOP 53384 AAT-like
4 4 SCOP 53687 Tryptophan synthase beta subunit-like PLP-dependent enzymes
4 4 SCOP 69892 Iron-containing alcohol dehydrogenase
4 3 SCOP 89572 Biotin dependent carboxylase carboxyltransferase domain
4 4 SCOP 90124 ABC transporter transmembrane region
3 3 SCOP 50678 ValRS/IleRS/LeuRS editing domain
3 3 SCOP 51570 Class I aldolase
3 3 SCOP 51883 Aminoacid dehydrogenase-like, C-terminal domain
3 3 SCOP 52541 Nucleotide and nucleoside kinases
3 3 SCOP 53402 Cystathionine synthase-like
3 3 SCOP 53417 GABA-aminotransferase-like
3 3 SCOP 53766 Oligosaccharide phosphorylase
3 3 SCOP 53823 L-arabinose binding protein-like
3 3 SCOP 54212 Translational machinery components
3 1 SCOP 55974 S-adenosylmethionine synthetase
3 3 SCOP 63818 Sortase
3 3 SCOP 88786 C5 cytosine-specific DNA methylase, DCM
3 3 SCOP 142721 PyrH-like
3 3 SCOP 161099 MetI-like
2 2 SCOP 47324 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
2 2 SCOP 47918 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 SCOP 48558 L-aspartase/fumarase
2 2 SCOP 50448 Elongation factors
2 2 SCOP 51367 Histidine biosynthesis enzymes
2 2 SCOP 51396 FMN-linked oxidoreductases
2 2 SCOP 51599 Class I DAHP synthetase
2 2 SCOP 51691 NadC C-terminal domain-like
2 2 SCOP 52173 CheY-related
2 2 SCOP 52397 Adenylyltransferase
2 2 SCOP 52403 N-type ATP pyrophosphatases
2 2 SCOP 52475 Pyruvate oxidase and decarboxylase, middle domain
2 1 SCOP 53080 Acetokinase-like
2 1 SCOP 53089 Glycerol kinase
2 2 SCOP 53138 Ribosomal protein L18 and S11
2 2 SCOP 53168 Purine and uridine phosphorylases
2 2 SCOP 53329 Formyltransferase
2 2 SCOP 53614 Ribokinase-like
2 2 SCOP 53620 Thiamin biosynthesis kinases
2 2 SCOP 53640 AraD-like aldolase/epimerase
2 2 SCOP 53660 Dimeric isocitrate & isopropylmalate dehydrogenases
2 2 SCOP 53672 Aspartate/ornithine carbamoyltransferase
2 2 SCOP 53733 Aconitase iron-sulfur domain
2 2 SCOP 53785 Phosphofructokinase
2 1 SCOP 53902 Thiolase-related
2 1 SCOP 54229 Ribonuclease PH domain 1-like
2 1 SCOP 54981 EF-G/eEF-2 domains III and V
2 2 SCOP 55299 YjgF/L-PSP
2 2 SCOP 55879 DNA gyrase/MutL, N-terminal domain
2 2 SCOP 55921 Creatinase/aminopeptidase
2 1 SCOP 56054 Ribosomal protein L6
2 2 SCOP 56236 Class II glutamine amidotransferases
2 2 SCOP 56713 Prokaryotic type I DNA topoisomerase
2 2 SCOP 68901 Cytidylytransferase
2 2 SCOP 69427 UDP-galactopyranose mutase, N-terminal domain
2 2 SCOP 75073 Hydantoinase (dihydropyrimidinase), catalytic domain
2 2 SCOP 75621 Release factor
2 2 SCOP 88724 Pyruvate oxidase and decarboxylase Pyr module
2 2 SCOP 88749 Pyruvate oxidase and decarboxylase PP module
2 2 SCOP 88760 TK-like PP module
2 2 SCOP 89559 NodB-like polysaccharide deacetylase
2 2 SCOP 110284 TM1225-like predicted glycosylases
2 1 SCOP 110297 Oligoxyloglucan reducing end-specific cellobiohydrolase
2 1 SCOP 143860 Polyphosphate kinase C-terminal domain
2 2 SCOP 161071 SNF-like
1 1 SCOP 46566 Chaperone J-domain
1 1 SCOP 46903 Spo0A
1 1 SCOP 46907 Ribosomal protein L11, C-terminal domain
1 1 SCOP 46947 Ribosomal protein S13
1 1 SCOP 47064 Ribosomal protein S15
1 1 SCOP 47241 Ferritin
1 1 SCOP 47447 Signal peptide-binding domain
1 1 SCOP 47730 Prokaryotic DNA-bending protein
1 1 SCOP 47786 NAD+-dependent DNA ligase, domain 3
1 1 SCOP 47790 C-terminal domain of RNA polymerase alpha subunit
1 1 SCOP 47974 Ribosomal protein S7
1 1 SCOP 48030 FliG
1 1 SCOP 48151 Endonuclease III
1 1 SCOP 48184 Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI)
1 1 SCOP 48257 Citrate synthase
1 1 SCOP 48335 DNA repair protein MutS, domain III
1 1 SCOP 48577 Isoprenyl diphosphate synthases
1 1 SCOP 48593 GroEL chaperone, ATPase domain
1 1 SCOP 49803 beta-Galactosidase/glucuronidase, N-terminal domain
1 1 SCOP 50114 C-terminal domain of ribosomal protein L2
1 1 SCOP 50194 Ribosomal protein L14
1 1 SCOP 50282 Cold shock DNA-binding domain-like
1 1 SCOP 50325 Inorganic pyrophosphatase
1 1 SCOP 50444 L-fucose isomerase, C-terminal domain
1 1 SCOP 50461 Ribosomal protein L3
1 1 SCOP 50466 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
1 1 SCOP 50495 Prokaryotic proteases
1 1 SCOP 50892 Cyclophilin (peptidylprolyl isomerase)
1 1 SCOP 51168 Galactoside acetyltransferase-like
1 1 SCOP 51183 dTDP-sugar isomerase
1 1 SCOP 51191 Type I phosphomannose isomerase
1 1 SCOP 51231 Biotinyl/lipoyl-carrier proteins and domains
1 1 SCOP 51247 BC C-terminal domain-like
1 1 SCOP 51284 dUTPase-like
1 1 SCOP 51352 Triosephosphate isomerase (TIM)
1 1 SCOP 51372 D-ribulose-5-phosphate 3-epimerase
1 1 SCOP 51392 Thiamin phosphate synthase
1 1 SCOP 51413 Inosine monophosphate dehydrogenase (IMPDH)
1 1 SCOP 51431 Aldo-keto reductases (NADP)
1 1 SCOP 51553 NagZ-like
1 1 SCOP 51591 Class II FBP aldolase
1 1 SCOP 51622 Pyruvate kinase
1 1 SCOP 51629 Pyruvate phosphate dikinase, C-terminal domain
1 1 SCOP 51714 tRNA-guanine transglycosylase
1 1 SCOP 51731 Methylenetetrahydrofolate reductase
1 1 SCOP 51800 Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
1 1 SCOP 51830 Formate/glycerate dehydrogenases, NAD-domain
1 1 SCOP 51868 6-phosphogluconate dehydrogenase-like, N-terminal domain
1 1 SCOP 51934 Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
1 1 SCOP 51999 PFL-like
1 1 SCOP 52005 Class III anaerobic ribonucleotide reductase NRDD subunit
1 1 SCOP 52010 Pyruvate phosphate dikinase, central domain
1 1 SCOP 52022 Carbamoyl phosphate synthetase, small subunit N-terminal domain
1 1 SCOP 52030 GroEL-like chaperone, apical domain
1 1 SCOP 52097 Clp protease, ClpP subunit
1 1 SCOP 52142 Uracil-DNA glycosylase
1 1 SCOP 52152 FabD-like
1 1 SCOP 52162 Ribosomal protein L13
1 1 SCOP 52167 Ribosomal protein L4
1 1 SCOP 52256 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
1 1 SCOP 52300 S-adenosylhomocystein hydrolase
1 1 SCOP 52305 Type II 3-dehydroquinate dehydratase
1 1 SCOP 52314 Ribosomal protein S2
1 1 SCOP 52339 Methylglyoxal synthase, MgsA
1 1 SCOP 52491 Tubulin, GTPase domain
1 1 SCOP 52931 Pyruvate-ferredoxin oxidoreductase, PFOR, domain II
1 1 SCOP 52944 ATP synthase (F1-ATPase), gamma subunit
1 1 SCOP 52955 Anticodon-binding domain of Class II aaRS
1 1 SCOP 52976 Maf-like
1 1 SCOP 53023 Very short patch repair (VSR) endonuclease
1 1 SCOP 53045 5' to 3' exonuclease catalytic domain
1 1 SCOP 53099 Ribonuclease H
1 1 SCOP 53134 RuvC resolvase
1 1 SCOP 53179 Peptidyl-tRNA hydrolase-like
1 1 SCOP 53224 Aminoacid dehydrogenases
1 1 SCOP 53240 Malic enzyme N-domain
1 1 SCOP 53324 Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
1 1 SCOP 53464 glucose-1-phosphate thymidylyltransferase
1 1 SCOP 53624 MurCDEF
1 1 SCOP 53629 Folylpolyglutamate synthetase
1 1 SCOP 53698 double-SIS domain
1 1 SCOP 53701 Phosphoglucose isomerase, PGI
1 1 SCOP 53721 ALDH-like
1 1 SCOP 53744 L-fucose isomerase, N-terminal and second domains
1 1 SCOP 53749 Phosphoglycerate kinase
1 1 SCOP 53760 Peptidoglycan biosynthesis glycosyltransferase MurG
1 1 SCOP 53775 Glutaminase/Asparaginase
1 1 SCOP 53796 PEP carboxykinase C-terminal domain
1 1 SCOP 53914 Chalcone synthase-like
1 1 SCOP 53921 Fe-only hydrogenase
1 1 SCOP 54224 DNA gyrase/MutL, second domain
1 1 SCOP 54535 FKBP immunophilin/proline isomerase
1 1 SCOP 54571 Ribosomal protein S19
1 1 SCOP 54714 Elongation factor Ts (EF-Ts), dimerisation domain
1 1 SCOP 54748 Ribosomal L11/L12e N-terminal domain
1 1 SCOP 54811 GMP synthetase C-terminal dimerisation domain
1 1 SCOP 54815 Prokaryotic type KH domain (KH-domain type II)
1 1 SCOP 54822 Ribosomal protein S3 C-terminal domain
1 1 SCOP 55000 Ribosomal protein S10
1 1 SCOP 55121 Pseudouridine synthase I TruA
1 1 SCOP 55178 Ribosomal protein S4
1 1 SCOP 55187 Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
1 1 SCOP 55195 Ribosome recycling factor, RRF
1 1 SCOP 55209 Enolpyruvate transferase, EPT
1 1 SCOP 55272 DNA repair protein MutS, domain I
1 1 SCOP 55283 Ribosomal protein L5
1 1 SCOP 55327 PurM N-terminal domain-like
1 1 SCOP 55348 GAPDH-like
1 1 SCOP 55827 YbaK/ProRS associated domain
1 1 SCOP 55832 Thymidylate synthase/dCMP hydroxymethylase
1 1 SCOP 55875 Heat shock protein 90, HSP90, N-terminal domain
1 1 SCOP 56038 B3/B4 domain of PheRS, PheT
1 1 SCOP 56043 PurM C-terminal domain-like
1 1 SCOP 56048 Ribosomal protein S8
1 1 SCOP 56085 Pyruvate phosphate dikinase, N-terminal domain
1 1 SCOP 56096 Adenylation domain of NAD+-dependent DNA ligase
1 1 SCOP 56248 Penicillin V acylase
1 1 SCOP 56421 Peptide deformylase
1 1 SCOP 56426 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
1 1 SCOP 56554 Insert subdomain of RNA polymerase alpha subunit
1 1 SCOP 56575 Serpins
1 1 SCOP 56602 beta-Lactamase/D-ala carboxypeptidase
1 1 SCOP 56673 DNA polymerase I
1 1 SCOP 56720 Type II DNA topoisomerase
1 1 SCOP 56732 DNA primase DnaG catalytic core
1 1 SCOP 56753 D-aminoacid aminotransferase-like PLP-dependent enzymes
1 1 SCOP 56797 Dehydroquinate synthase, DHQS
1 1 SCOP 56802 Acetyl-CoA synthetase-like
1 1 SCOP 56809 Ribosomal protein L1
1 1 SCOP 56822 Hybrid cluster protein (prismane protein)
1 1 SCOP 57939 DnaJ/Hsp40 cysteine-rich domain
1 1 SCOP 63588 Glycosyltransferase family 36 C-terminal domain
1 1 SCOP 63733 Glycosyltransferase family 36 N-terminal domain
1 1 SCOP 63984 Sir2 family of transcriptional regulators
1 1 SCOP 64006 Undecaprenyl diphosphate synthase
1 1 SCOP 64159 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
1 1 SCOP 64162 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, catalytic domain
1 1 SCOP 64186 HPr kinase HprK C-terminal domain
1 1 SCOP 64198 AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
1 1 SCOP 64264 Prokaryotic ribosomal protein L17
1 1 SCOP 64398 Hsp33 domain
1 1 SCOP 64485 RNA-polymerase beta
1 1 SCOP 64519 Phase 1 flagellin
1 1 SCOP 68924 PEP carboxykinase N-terminal domain
1 1 SCOP 69066 RNase III catalytic domain-like
1 1 SCOP 69501 DTD-like
1 1 SCOP 69557 Spermidine synthase
1 1 SCOP 69602 L-histidinol dehydrogenase HisD
1 1 SCOP 69746 Pseudouridine synthase II TruB
1 1 SCOP 69766 IpsF-like
1 1 SCOP 69865 Argininosuccinate synthetase, C-terminal domain
1 1 SCOP 74732 Ribosomal protein L20
1 1 SCOP 74911 Aldose 1-epimerase (mutarotase)
1 1 SCOP 74983 Small protein B (SmpB)
1 1 SCOP 75006 alpha-L-arabinanase-like
1 1 SCOP 75218 SpoU-like RNA 2'-O ribose methyltransferase
1 1 SCOP 75264 Glucose-inhibited division protein B (GidB)
1 1 SCOP 75292 YjeF C-terminal domain-like
1 1 SCOP 75297 N-acetyl-l-glutamate kinase
1 1 SCOP 75305 Amidase signature (AS) enzymes
1 1 SCOP 75323 Exonuclease RecJ
1 1 SCOP 75459 Pseudouridine synthase RsuA/RluD
1 1 SCOP 75554 Smc hinge domain
1 1 SCOP 75626 YebC-like
1 1 SCOP 81605 PP2C-like
1 1 SCOP 81656 Meta-cation ATPase, catalytic domain P
1 1 SCOP 81664 Calcium ATPase, transmembrane domain M
1 1 SCOP 81800 Putative methyltransferase TM0872, insert domain
1 1 SCOP 82052 Obg GTP-binding protein N-terminal domain
1 1 SCOP 82258 SAH/MTA deaminase-like
1 1 SCOP 82267 TatD Mg-dependent DNase-like
1 1 SCOP 82283 Homocysteine S-methyltransferase
1 1 SCOP 82359 PP-loop ATPase
1 1 SCOP 82371 YbeA-like
1 1 SCOP 82550 DegV-like
1 1 SCOP 82583 G domain-linked domain
1 1 SCOP 82661 Poly A polymerase head domain-like
1 1 SCOP 88665 Sigma4 domain
1 1 SCOP 88746 PFOR Pyr module
1 1 SCOP 88771 PFOR PP module
1 1 SCOP 88788 N6 adenine-specific DNA methylase, DAM
1 1 SCOP 88854 Protein kinases, catalytic subunit
1 1 SCOP 88947 Sigma2 domain of RNA polymerase sigma factors
1 1 SCOP 89494 HMGL-like
1 1 SCOP 89551 PHP domain
1 1 SCOP 89624 Ribose/Galactose isomerase RpiB/AlsB
1 1 SCOP 89629 tRNA(m1G37)-methyltransferase TrmD
1 1 SCOP 89724 Macro domain
1 1 SCOP 100921 Heat shock protein 70kD (HSP70), peptide-binding domain
1 1 SCOP 101340 HD domain
1 1 SCOP 101354 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 SCOP 101822 Aminopeptidase/glucanase lid domain
1 1 SCOP 101905 GyrA/ParC C-terminal domain-like
1 1 SCOP 102575 NOL1/NOP2/sun
1 1 SCOP 102660 PlsX-like
1 1 SCOP 102706 NIF3 (NGG1p interacting factor 3)-like
1 1 SCOP 102755 Hsp90 middle domain
1 1 SCOP 102769 ATP-dependent protease Lon (La), catalytic domain
1 1 SCOP 102928 NifU/IscU domain
1 1 SCOP 102945 RelA/SpoT domain
1 1 SCOP 103040 CheC-like
1 1 SCOP 103264 Chorismate synthase, AroC
1 1 SCOP 109756 PhoU-like
1 1 SCOP 110520 Methenyltetrahydrofolate synthetase
1 1 SCOP 110734 Glycosyl transferases group 1
1 1 SCOP 111219 ArgJ-like
1 1 SCOP 111305 Recombination protein RecR
1 1 SCOP 111353 Ammonium transporter
1 1 SCOP 117139 YicI N-terminal domain-like
1 1 SCOP 117372 YicI catalytic domain-like
1 1 SCOP 117375 Glycosyl hydrolases family 35 catalytic domain
1 1 SCOP 117888 Ribosomal protein L16p
1 1 SCOP 140991 FtsH protease domain-like
1 1 SCOP 141245 Ribosomal protein L19
1 1 SCOP 141735 HisI-like
1 1 SCOP 141755 PdxS-like
1 1 SCOP 142077 HTS-like
1 1 SCOP 142093 ThiI-like
1 1 SCOP 142434 CinA-like
1 1 SCOP 142755 NadA-like
1 1 SCOP 143632 ApbE-like
1 1 SCOP 143812 GatB/GatE catalytic domain-like
1 1 SCOP 143976 lvD/EDD N-terminal domain-like
1 1 SCOP 143979 Type I restriction modification DNA specificity domain
1 1 SCOP 144053 Thermophilic metalloprotease (M29)
1 1 SCOP 158600 MgsA/YrvN C-terminal domain-like
1 1 SCOP 158833 Tex N-terminal region-like
1 1 SCOP 159436 HI0933 N-terminal domain-like
1 1 SCOP 159444 SP0239-like
1 1 SCOP 159584 PTS system, Fructose specific IIB subunit-like
1 1 SCOP 159635 Tex RuvX-like domain-like
1 1 SCOP 159832 PBP transglycosylase domain-like
1 1 SCOP 160370 Ribosomal protein L10-like
1 1 SCOP 160984 Diacylglycerol kinase-like

Jump to [ Top of page · Assignment statistics ]


The following families have one or more weak hits:

SCOP family Cation efflux protein transmembrane domain-like
SCOP family HI0933 insert domain-like
SCOP family MalF N-terminal region-like
SCOP family CorC/HlyC domain-like
SCOP family EscU C-terminal domain-like
SCOP family SpoVG-like
SCOP family V-type ATPase subunit E
SCOP family Smr domain
SCOP family TM1266-like
SCOP family Iojap/YbeB-like
SCOP family GSPII protein E N-terminal domain-like
SCOP family Cation efflux protein cytoplasmic domain-like
SCOP family FkbM-like
SCOP family YpsA-like
SCOP family AtpF-like
SCOP family AlaX-M N-terminal domain-like
SCOP family AadK C-terminal domain-like
SCOP family Tex HhH-containing domain-like
SCOP family DnaD domain
SCOP family HAMP domain
SCOP family YznC-like
SCOP family NOB1 zinc finger-like
SCOP family Magnesium transport protein CorA, transmembrane region
SCOP family CorA soluble domain-like
SCOP family Ribosomal protein L31p
SCOP family PPK middle domain-like
SCOP family TRCF domain
SCOP family THUMP domain
SCOP family Transposase IS200-like
SCOP family BT0572-like
SCOP family Aspartokinase allosteric domain-like
SCOP family SP0238-like
SCOP family IlvH-like
SCOP family Acyl-ACP thioesterase-like
SCOP family Ribosomal protein L35p
SCOP family RelE-like
SCOP family YjbR-like
SCOP family NlpC/P60
SCOP family YhhF-like
SCOP family N-6 DNA Methylase-like
SCOP family CoaX-like
SCOP family NQO2-like
SCOP family Nqo1 FMN-binding domain-like
SCOP family IlvD/EDD C-terminal domain-like
SCOP family EAL domain
SCOP family LON domain-like
SCOP family Pentapeptide repeats
SCOP family BH3618-like
SCOP family RimM N-terminal domain-like
SCOP family CarD-like
SCOP family Beta-D-xylosidase C-terminal domain-like
SCOP family CBM11
SCOP family Ribosomal protein L21p
SCOP family Glu-tRNAGln amidotransferase C subunit
SCOP family Fic-like
SCOP family HisE-like (PRA-PH)
SCOP family TyrA dimerization domain-like
SCOP family GatB/GatE C-terminal domain-like
SCOP family SP0561-like
SCOP family PPK N-terminal domain-like
SCOP family FtsK C-terminal domain-like
SCOP family HSP33 redox switch-like
SCOP family Tpt1/KptA
SCOP family Hypothetical protein aq 1666
SCOP family DNA mismatch repair protein MutL
SCOP family TM1457-like
SCOP family GGDEF domain
SCOP family Band 7/SPFH domain
SCOP family CAC2371-like
SCOP family Putative glucosidase YicI, domain 3
SCOP family Flagellar hook protein flgE
SCOP family CsrA-like
SCOP family Putative glucosidase YicI, C-terminal domain
SCOP family ProC C-terminal domain-like
SCOP family TrmE connector domain
SCOP family XseB-like
SCOP family PadR-like
SCOP family TrkA C-terminal domain-like
SCOP family NAD kinase-like
SCOP family YfcE-like
SCOP family YjbQ-like
SCOP family HSP90 C-terminal domain
SCOP family 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
SCOP family FabZ-like
SCOP family ParB-like nuclease domain
SCOP family ROK
SCOP family YeaZ-like
SCOP family MoCo biosynthesis proteins
SCOP family Serine acetyltransferase
SCOP family TF C-terminus
SCOP family KorB DNA-binding domain-like
SCOP family YlxM/p13-like
SCOP family Heat-inducible transcription repressor HrcA, N-terminal domain
SCOP family Sec-C motif
SCOP family Preprotein translocase SecY subunit
SCOP family Multidrug resistance efflux transporter EmrE
SCOP family NADH pyrophosphatase
SCOP family Predicted metal-dependent hydrolase
SCOP family OmpA-like
SCOP family Holliday junction resolvase RusA
SCOP family Galactokinase
SCOP family Imidazole glycerol phosphate dehydratase
SCOP family Obg GTP-binding protein C-terminal domain
SCOP family Trigger factor ribosome-binding domain
SCOP family Endonuclease I
SCOP family (Uracil-5-)-methyltransferase
SCOP family Ribosomal protein L11 methyltransferase PrmA
SCOP family RbsD-like
SCOP family N-acetylmuramoyl-L-alanine amidase-like
SCOP family Putative Holliday junction resolvase RuvX
SCOP family Oxygen-independent coproporphyrinogen III oxidase HemN
SCOP family Biotin synthase
SCOP family Peptidoglycan hydrolase LytM
SCOP family Adhesin YadA, collagen-binding domain
SCOP family Stabilizer of iron transporter SufD
SCOP family Hypothetical protein YwiB
SCOP family Surface presentation of antigens (SPOA)
SCOP family TRAM domain
SCOP family Supernatant protein factor (SPF), C-terminal domain
SCOP family Anti-sigma factor FlgM
SCOP family ADP-ribosylglycohydrolase
SCOP family DhaL-like
SCOP family CMD-like
SCOP family Flagellar export chaperone FliS
SCOP family Isochorismatase-like hydrolases
SCOP family Heat shock protein 70kD (HSP70), C-terminal subdomain
SCOP family Myosin rod fragments
SCOP family Ran binding protein zinc finger-like
SCOP family Ribosome-binding factor A, RbfA
SCOP family PaaI/YdiI-like
SCOP family Deoxycytidylate deaminase-like
SCOP family YggJ C-terminal domain-like
SCOP family YggJ N-terminal domain-like
SCOP family TM1287-like
SCOP family Antibiotic binding domain of TipA-like multidrug resistance regulators
SCOP family DmpG/LeuA communication domain-like
SCOP family LysR-like transcriptional regulators
SCOP family rRNA adenine dimethylase-like
SCOP family TK-like Pyr module
SCOP family Eukaryotic ODC-like
SCOP family Alanine racemase
SCOP family Sigma3 domain
SCOP family Multidrug efflux transporter AcrB transmembrane domain
SCOP family GIY-YIG endonuclease
SCOP family N-utilization substance G protein NusG, N-terminal domain
SCOP family YbaB-like
SCOP family MraW-like putative methyltransferases
SCOP family Predicted hydrolases Cof
SCOP family 5'(3')-deoxyribonucleotidase (dNT-2)
SCOP family Shikimate dehydrogenase-like
SCOP family Kid/PemK
SCOP family N-utilization substance G protein NusG, C-terminal domain
SCOP family Double Clp-N motif
SCOP family HCP-like
SCOP family Poly A polymerase C-terminal region-like
SCOP family Helical scaffold and wing domains of SecA
SCOP family Pre-protein crosslinking domain of SecA
SCOP family Chromosomal replication initiation factor DnaA C-terminal domain IV
SCOP family Metal cation-transporting ATPase, ATP-binding domain N
SCOP family Calcium ATPase, transduction domain A
SCOP family F1F0 ATP synthase subunit B, membrane domain
SCOP family F1F0 ATP synthase subunit A
SCOP family F1F0 ATP synthase subunit C
SCOP family Gated mechanosensitive channel
SCOP family Cellulosomal scaffoldin protein CipC, module x2.1
SCOP family E-set domains of sugar-utilizing enzymes
SCOP family TGS domain
SCOP family Hypothetical protein TM0269
SCOP family Archaeal IMP cyclohydrolase PurO
SCOP family RNA 2'-O ribose methyltransferase substrate binding domain
SCOP family YhbY-like
SCOP family Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain
SCOP family YjeE-like
SCOP family beta-Phosphoglucomutase-like
SCOP family HPr kinase/phoshatase HprK N-terminal domain
SCOP family Hydantoinase (dihydropyrimidinase)
SCOP family Clc chloride channel
SCOP family Ribosome binding protein Y (YfiA homologue)
SCOP family Lrp/AsnC-like transcriptional regulator C-terminal domain
SCOP family Transcription factor NusA, N-terminal domain
SCOP family UDP-galactopyranose mutase
SCOP family mono-SIS domain
SCOP family ArsC-like
SCOP family Alpha subunit of glutamate synthase, C-terminal domain
SCOP family RecG "wedge" domain
SCOP family Family 6 carbohydrate binding module, CBM6
SCOP family PBP5 C-terminal domain-like
SCOP family Carbamilase
SCOP family Manganese-dependent inorganic pyrophosphatase (family II)
SCOP family YjeF N-terminal domain-like
SCOP family Germination protease
SCOP family BadF/BadG/BcrA/BcrD-like
SCOP family Thiamin pyrophosphokinase, catalytic domain
SCOP family Potassium channel NAD-binding domain
SCOP family 1,4-beta-N-acetylmuraminidase
SCOP family Cell-division inhibitor MinC, C-terminal domain
SCOP family TS-N domain
SCOP family MurE/MurF N-terminal domain
SCOP family MPP-like
SCOP family Ferredoxin reductase FAD-binding domain-like
SCOP family MarR-like transcriptional regulators
SCOP family Ribosomal protein L36
SCOP family Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
SCOP family Rubredoxin
SCOP family DNA primase zinc finger
SCOP family Ribosomal protein S14
SCOP family Major capsid protein gp5
SCOP family Penicillin binding protein dimerisation domain
SCOP family Lambda integrase-like, catalytic core
SCOP family Protein serine/threonine phosphatase
SCOP family Purple acid phosphatase-like
SCOP family ROO N-terminal domain-like
SCOP family Glyoxalase II (hydroxyacylglutathione hydrolase)
SCOP family 4'-Phosphopantetheinyl transferase SFP
SCOP family ATP-binding domain of peptide synthetases
SCOP family Nitrite and sulphite reductase 4Fe-4S domain-like
SCOP family DNA polymerase III, beta subunit
SCOP family Phosphoglucomutase, C-terminal domain
SCOP family DNA repair glycosylase, N-terminal domain
SCOP family Glutamine synthetase catalytic domain
SCOP family Histidine kinase
SCOP family MutT-like
SCOP family IIA domain of mannitol-specific and ntr phosphotransferase EII
SCOP family PR-1-like
SCOP family N-acetyl transferase, NAT
SCOP family Biotin holoenzyme synthetase
SCOP family Ribonuclease PH domain 2-like
SCOP family Ribosomal protein L9 N-domain
SCOP family Ribosomal protein L9 C-domain
SCOP family HPr-like
SCOP family Glucose 6-phosphate dehydrogenase-like
SCOP family Dihydrodipicolinate reductase-like
SCOP family Homoserine dehydrogenase-like
SCOP family L30e/L7ae ribosomal proteins
SCOP family Tubulin, C-terminal domain
SCOP family GAD domain
SCOP family RNA polymerase alpha subunit dimerisation domain
SCOP family Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
SCOP family Ribosomal protein L30p/L7e
SCOP family Probable ACP-binding domain of malonyl-CoA ACP transacylase
SCOP family Bacterial exopeptidase dimerisation domain
SCOP family HMA, heavy metal-associated domain
SCOP family Ribosomal protein S6
SCOP family Anticodon-binding domain of PheRS
SCOP family Acylphosphatase-like
SCOP family Prokaryotic signal transducing protein
SCOP family Ferredoxin domains from multidomain proteins
SCOP family Short-chain ferredoxins
SCOP family GroEL-like chaperone, intermediate domain
SCOP family Ribosomal protein L22
SCOP family Eukaryotic type KH-domain (KH-domain type I)
SCOP family Double-stranded RNA-binding domain (dsRBD)
SCOP family RecA protein, C-terminal domain
SCOP family AbrB N-terminal domain-like
SCOP family Ribosomal protein L7/12, C-terminal domain
SCOP family NadC N-terminal domain-like
SCOP family 4HBT-like
SCOP family CBS-domain pair
SCOP family Ribosomal protein S16
SCOP family GreA transcript cleavage factor, C-terminal domain
SCOP family Pilin
SCOP family 2Fe-2S ferredoxin domains from multidomain proteins
SCOP family GHMP Kinase, N-terminal domain
SCOP family RNase P protein
SCOP family L23p
SCOP family Penicillin-binding protein 2x (pbp-2x), c-terminal domain
SCOP family DNA-binding domain from tn916 integrase
SCOP family LysM domain
SCOP family Papain-like
SCOP family Bacterial muramidase, catalytic domain
SCOP family TroA-like
SCOP family Tetrapyrrole methylase
SCOP family Phosphoglucomutase, first 3 domains
SCOP family Dihydrofolate reductases
SCOP family Haloperoxidase
SCOP family Carboxylesterase
SCOP family Spore coat polysaccharide biosynthesis protein SpsA
SCOP family Chemotaxis receptor methyltransferase CheR, C-terminal domain
SCOP family Phosphoribosylpyrophosphate synthetase-like
SCOP family Cofactor-dependent phosphoglycerate mutase
SCOP family MurCDEF C-terminal domain
SCOP family Tetrahydrofolate dehydrogenase/cyclohydrolase
SCOP family DNA repair protein MutS, domain II
SCOP family MTH1175-like
SCOP family DnaQ-like 3'-5' exonuclease
SCOP family Creatinase/prolidase N-terminal domain
SCOP family gamma,delta resolvase, catalytic domain
SCOP family Pyruvate kinase, C-terminal domain
SCOP family Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
SCOP family Thioredoxin-like 2Fe-2S ferredoxin
SCOP family Thioltransferase
SCOP family CAT-like
SCOP family Phosphoribulokinase/pantothenate kinase
SCOP family Shikimate kinase (AroK)
SCOP family D-Alanine ligase N-terminal domain
SCOP family Dihydroorotate dehydrogenase B, PyrK subunit
SCOP family Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain
SCOP family DJ-1/PfpI
SCOP family Formate/glycerate dehydrogenases, substrate-binding domain
SCOP family Beta-D-glucan exohydrolase, C-terminal domain
SCOP family Flavodoxin-related
SCOP family Initiation factor IF2/eIF5b, domain 3
SCOP family Mug-like
SCOP family DNA ligase
SCOP family Tail specific protease, catalytic domain
SCOP family LeuD-like
SCOP family N-terminal domain of enzyme I of the PEP:sugar phosphotransferase system
SCOP family MurCD N-terminal domain
SCOP family N-terminal domain of adrenodoxin reductase-like
SCOP family FAD/NAD-linked reductases, N-terminal and central domains
SCOP family Endonuclease IV
SCOP family "Hypothetical" protein ybl036c
SCOP family Alanine racemase-like, N-terminal domain
SCOP family Decarboxylase
SCOP family Epsilon subunit of F1F0-ATP synthase N-terminal domain
SCOP family LexA-related
SCOP family Regulatory protein AraC
SCOP family alpha-Amylases, C-terminal beta-sheet domain
SCOP family Quinoprotein alcohol dehydrogenase-like
SCOP family Pyruvate kinase beta-barrel domain
SCOP family N-terminal domain of alpha and beta subunits of F1 ATP synthase
SCOP family Post formyltransferase domain
SCOP family PNP-oxidase like
SCOP family CheW-like
SCOP family ABC-transporter additional domain
SCOP family DNA ligase/mRNA capping enzyme postcatalytic domain
SCOP family Myf domain
SCOP family Single strand DNA-binding domain, SSB
SCOP family DNA helicase RuvA subunit, N-terminal domain
SCOP family Anticodon-binding domain
SCOP family eIF5a N-terminal domain-like
SCOP family Ribosomal proteins L24p and L21e
SCOP family SH3-domain
SCOP family FeoA-like
SCOP family Biotin repressor (BirA)
SCOP family beta-Galactosidase, domain 5
SCOP family HSP40/DnaJ peptide-binding domain
SCOP family Cellulose-binding domain family II
SCOP family Invasin/intimin cell-adhesion fragments
SCOP family Purple acid phosphatase, N-terminal domain
SCOP family beta-Galactosidase/glucuronidase domain
SCOP family Fibronectin type III
SCOP family Dimeric chorismate mutase
SCOP family Ribosomal protein L7/12, oligomerisation (N-terminal) domain
SCOP family N-acylglucosamine (NAG) epimerase
SCOP family C-terminal domain of glutamyl-tRNA synthetase (GluRS)
SCOP family DNA repair glycosylase, 2 C-terminal domains
SCOP family Carbamoyl phosphate synthetase, large subunit connection domain
SCOP family N-terminal domain of DnaB helicase
SCOP family Antitermination factor NusB
SCOP family Iron-dependent repressor protein, dimerization domain
SCOP family Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
SCOP family 5' to 3' exonuclease, C-terminal subdomain
SCOP family DNA helicase RuvA subunit, middle domain
SCOP family Chemotaxis receptor methyltransferase CheR, N-terminal domain
SCOP family GalR/LacI-like bacterial regulator
SCOP family SinR domain-like
SCOP family Homodimeric domain of signal transducing histidine kinase
SCOP family Domain of the SRP/SRP receptor G-proteins
SCOP family Acyl-carrier protein (ACP)
SCOP family DNA-binding N-terminal domain of transcription activators
SCOP family Domains B1 and B5 of PheRS-beta, PheT
SCOP family DNA helicase RuvA subunit, C-terminal domain
SCOP family Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
SCOP family Ribosomal protein S18
SCOP family GerE-like (LuxR/UhpA family of transcriptional regulators)
SCOP family PhoB-like
SCOP family Helicase DNA-binding domain
SCOP family ArsR-like transcriptional regulators
SCOP family Methylated DNA-protein cysteine methyltransferase, C-terminal domain
SCOP family Tetracyclin repressor-like, N-terminal domain
SCOP family Epsilon subunit of F1F0-ATP synthase C-terminal domain
SCOP family C-terminal UvrC-binding domain of UvrB
SCOP family Phenylalanyl-tRNA synthetase (PheRS)
SCOP family Seryl-tRNA synthetase (SerRS)
SCOP family Ribosomal protein L29 (L29p)
SCOP family GreA transcript cleavage protein, N-terminal domain
SCOP family Dihydropyrimidine dehydrogenase, N-terminal domain

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