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Domain assignment for gi|113954631|ref|YP_732094.1| from Synechococcus sp. CC9311

Domain architecture


Domain assignment details

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Strong hits

Sequence:  gi|113954631|ref|YP_732094.1|
Domain Number 1 Region: 49-180
Classification Level Classification E-value
Superfamily Sigma2 domain of RNA polymerase sigma factors 4.58e-47
Family Sigma2 domain of RNA polymerase sigma factors 0.0000594
Further Details:      
 
Domain Number 2 Region: 244-336
Classification Level Classification E-value
Superfamily Sigma3 and sigma4 domains of RNA polymerase sigma factors 5.61e-26
Family Sigma4 domain 0.0014
Further Details:      
 
Domain Number 3 Region: 183-257
Classification Level Classification E-value
Superfamily Sigma3 and sigma4 domains of RNA polymerase sigma factors 0.00000000000061
Family Sigma3 domain 0.034
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|113954631|ref|YP_732094.1|
Sequence length 340
Comment RNA polymerase sigma factor [Synechococcus sp. CC9311]
Sequence
MGIPLESKEVATKGSSKELLLPKANRRSATNRSSGTGSGRGNRSSGRLATDSIGHYLSSI
GRVPLLTAAEEIELAHHVQAMKELLDIQEEERTPKQRHRIRMGKRARDRMMAANLRLVVS
VAKKYQNQGLELLDLVQEGAIGLERAVDKFDPAMGYKFSTYAYWWIRQGMTRAIDNSART
IRLPIHISEKLSKMRKITRELSHRFGRQPNRLELAHAMGIEPRDLEELIAQSAPCASLDA
HARGEEDRSTLGELIPDPNGDEPMEGMDRSIQKEHLGGWLSQLNEREQKILRLRFGLGGE
EPLTLAEIGRQINVSRERVRQLESKAILKLRTMTNHQQAA
Download sequence
Identical sequences Q0I628
64471.sync_2907 gi|113954631|ref|YP_732094.1| WP_011620794.1.57161

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