SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|113955282|ref|YP_730579.1| from Synechococcus sp. CC9311

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|113955282|ref|YP_730579.1|
Domain Number 1 Region: 139-399
Classification Level Classification E-value
Superfamily DNA breaking-rejoining enzymes 1.82e-39
Family Lambda integrase-like, catalytic core 0.013
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|113955282|ref|YP_730579.1|
Sequence length 402
Comment phage integrase [Synechococcus sp. CC9311]
Sequence
MGDWSLPKTTSSNPRYITRRKGRDGWYFIRSVPPKLRGAIGCSTWRRKAGKTLGEAKRNA
LVFLEETDQLIREAKGQQETPDQKLLSVVPWRGLFPDDLGTITPRYQQEFPGRPEKDLEG
TCKPPKTPDDLLTLATLMKSPAPSTKKEWERHLGKLMEHCQKQFITALTRDDALSYRHHL
LTTTAASTTKTRLRYLSGLFNVAVDEGWINSNPIEGLTKRVRGKAVVKQVVRLDQADERW
QNLPKHHQLLWHVLRWTGSHASEAAGLRWEDIDLNQGTISFKGHETRPLKNEFRQRTIPI
HHKLMEILRIESELSMDHSGLIFPWAYNPNRARWAEGMHWSDIIGVSPKATRDWAASCLS
TKNLNERAIRKLFGHSPSNTSISGIYGSVDLDTMRRTLDQLE
Download sequence
Identical sequences Q0IAE3
WP_011619297.1.57161 64471.sync_1372 gi|113955282|ref|YP_730579.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]