SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|113955311|ref|YP_729850.1| from Synechococcus sp. CC9311

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|113955311|ref|YP_729850.1|
Domain Number 1 Region: 106-340
Classification Level Classification E-value
Superfamily MurD-like peptide ligases, catalytic domain 1.57e-74
Family MurCDEF 0.0000225
Further Details:      
 
Domain Number 2 Region: 341-500
Classification Level Classification E-value
Superfamily MurD-like peptide ligases, peptide-binding domain 4.88e-50
Family MurCDEF C-terminal domain 0.0000165
Further Details:      
 
Domain Number 3 Region: 16-105
Classification Level Classification E-value
Superfamily MurE/MurF N-terminal domain 4.32e-18
Family MurE/MurF N-terminal domain 0.0024
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|113955311|ref|YP_729850.1|
Sequence length 503
Comment UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Synechococcus sp. CC9311]
Sequence
MTQRLHALLHSVGLPVPQGLSDAVIESITCDSRCVGPGSVFIGLPGGRVDGGSFWPKALV
DGASAVLIGSAAAATLPPEQSDAVLVVPDPVARWAGELAAAFWNHPSERIGLIGVTGTNG
KTTTTHLIEHLSSACGRPSALFGTLLNRWPGHSVTATHTTAVADRLQAQLAEAYAAGAQL
TAMEVSSHALDQHRVAGCRFSGAVFTNLTQDHLDYHETMASYFEAKARLFAPPLVADQGA
QFVVNIDDPWGKHLAERLGDRCWRSSLSEGSAHAELTMSDLVMGSSGVEGRLLSPLGEGS
FQSPLLGRFNVMNLLQAVGVLLQQGLPLEALLEAISTFRGVPGRMERVVVDGKGGELPTV
LVDYAHTPDGLSSALNACRPFADGKLICVFGCGGDRDRGKRSQMAAIAAELADAVVVTSD
NPRTEDPQQILNDVVEGIPSGTALTVMLDRAEAIAGAIKDAGSHDLVLIAGKGHEDYQIL
GTQKVHFDDREQALKALQDKLIF
Download sequence
Identical sequences Q0ICH2
WP_011618577.1.57161 64471.sync_0632 gi|113955311|ref|YP_729850.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]