SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|123966439|ref|YP_001011520.1| from Prochlorococcus marinus str. MIT 9515

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|123966439|ref|YP_001011520.1|
Domain Number 1 Region: 5-342,465-502
Classification Level Classification E-value
Superfamily FAD/NAD(P)-binding domain 1.55e-54
Family FAD-linked reductases, N-terminal domain 0.028
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) gi|123966439|ref|YP_001011520.1|
Sequence length 514
Comment carotenoid isomerase [Prochlorococcus marinus str. MIT 9515]
Sequence
MQSYKESFDAIIIGSGIGGLVTASQLASKGAKVLVLEKYIIPGGSGGSFKRKGYTFDVGA
SMIFGFGETGYTNLLTRALKDVNEKCETIPDPVQLEYHLPDGFSISVDKSYEKFISKLSE
RFPHEKEGIKKFYKTCSNVFNCLDSMPLLSIEDPSYLFKVFFKAPLSCLGLARWLPINAG
DVARRFINDPELLKFIDIECFCWSVMPAIKTPMINAGMVFTDRHAGGINYPKGGVGKIAE
KLVSGLEKLGSKIRYRANVVEILLKDKKAIGVKLSNGEEIYSNIIVSNSTRWDTFGLDNQ
KKGLIKSDSVPKNEHKWSETYKPSPSFVSIHLGVNQDLIDKDFNCHHIIVENWNELENEK
GVIFISIPTLLDPSLAPKGKHIIHTFTPSSIDEWENLSRKDYIKKKELYYNFMIEKISKL
IPNLDQNIDHKEIGTPRTHKKFLGRFEGSYGPIPNKKLLGLLPMPFNTTKIRNLYCVGDS
CFPGQGLNAVAFSGYACAHKIGSKLNINSFNLPD
Download sequence
Identical sequences A2BXA2
167542.P9515_12061 WP_011820513.1.83733 gi|123966439|ref|YP_001011520.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]