SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|251797929|ref|YP_003012660.1| from Paenibacillus sp. JDR-2

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|251797929|ref|YP_003012660.1|
Domain Number 1 Region: 628-912
Classification Level Classification E-value
Superfamily Pectin lyase-like 2.69e-34
Family iota-carrageenase 0.035
Further Details:      
 
Domain Number 2 Region: 172-308
Classification Level Classification E-value
Superfamily Galactose-binding domain-like 1.49e-23
Family Galactose-binding domain 0.02
Further Details:      
 
Domain Number 3 Region: 32-164
Classification Level Classification E-value
Superfamily Galactose-binding domain-like 5.1e-22
Family Family 6 carbohydrate binding module, CBM6 0.0045
Further Details:      
 
Domain Number 4 Region: 316-447
Classification Level Classification E-value
Superfamily Galactose-binding domain-like 6.59e-21
Family Family 6 carbohydrate binding module, CBM6 0.015
Further Details:      
 
Weak hits

Sequence:  gi|251797929|ref|YP_003012660.1|
Domain Number - Region: 467-565
Classification Level Classification E-value
Superfamily Galactose-binding domain-like 0.0283
Family Family 6 carbohydrate binding module, CBM6 0.035
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|251797929|ref|YP_003012660.1|
Sequence length 1022
Comment coagulation factor 5/8 type domain-containing protein [Paenibacillus sp. JDR-2]
Sequence
MPRKTRSSRLFIYVLTLALLVLQLPYSAIVSAASATYEAESAARSGGVVVATDHTGYSGS
GFAGGYTDANKGNAATAFAVSASTAGSYTTALRYSNGTGSAKTLSLYVNGAKLKQISLSA
TPDWNSWSTQTETVSLNSGSNAITYKFDATDSGNVNLDNIVVSDTSTGTTPSGTNLALNK
PIASNNNYAGFAATNAVDGNISTYYEGAANSYSNILTVDLGSAQSVNSVVLKLPASWGTR
TQTLSVAASADNNTFNTAAASNTYTFNPSSGNTVTLSFTATSARYIRVNFTANSGSTGGQ
VSELEVYGSGGTVTPPTSPAGTYEAEAAVLSGGASVATDHADYSGTGFVGGFIDTNKGNA
SAIFNVNVAAAGSYTVTLKYANGSTAAQTLSLYTNGTKSLQTSLQATANWDTWSTKADTV
TLNAGNNTIMYRYDTTDTGNVNIDKIDVAIVETPPVTPPPSGTYGATMPYDTYEAESLTY
TGTVVGPNTTFGNLASEASGRKAVQLAAAGQYVQFTLAKAAKGVTIRYSIPDNAAGTGID
SAISMYIGGTLFKDINLTSKYSWNYGAWGTEGGEIRWSNNPNATPTTPHHLYDEVSVVLN
QEYPAGTVIKLQRNASNLNFSSTANVTIDLIETEAIPAALTMPSNYVSITSYGAVANDGA
DDTTAINNAINAVKNSGGTYKGVWIPSGTFTLNNGNKGAGYDGSGTRLYLDSGVSMKGAG
IWYSTLSGNYAGLYLRGGNVTVSDFKISANDIIRDDYNGVSGVEGNGTNSALTNLWIEHA
KVGFWLTNQTNNATISNSRIRDVWADGLNLHYGTSNSTVTNNSVRNSGDDGLAMWSDTYL
DTNNTFSYNTVQIPTLANNIAIYGGKDNKVIGNLLTDTVVNGSGISFGTNFNPPSMTGTL
TVQDNVLIRTGSYHKDYGYQIGAIWAYWLNNAGKAQNLTVAVSGNAIQDSIYSGIFIEEP
APSISVTYASNTITNSGTYGVYIRGTATGSSVFNNNTVNGAPSGKFSNTSSSFTVTGSGN
NW
Download sequence
Identical sequences C6D5M9
WP_015845514.1.29859 gi|251797929|ref|YP_003012660.1| 324057.Pjdr2_3944

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]