SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|256395578|ref|YP_003117142.1| from Catenulispora acidiphila DSM 44928

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|256395578|ref|YP_003117142.1|
Domain Number 1 Region: 86-220
Classification Level Classification E-value
Superfamily GntR ligand-binding domain-like 2.59e-24
Family GntR ligand-binding domain-like 0.011
Further Details:      
 
Domain Number 2 Region: 13-89
Classification Level Classification E-value
Superfamily "Winged helix" DNA-binding domain 0.00000000000114
Family GntR-like transcriptional regulators 0.04
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|256395578|ref|YP_003117142.1|
Sequence length 236
Comment GntR family transcriptional regulator [Catenulispora acidiphila DSM 44928]
Sequence
MDSAVDTLQDPAPSNMSPSESAYRQLRDRLLIGGFPLTRQLAEKRLAAMFGVSRTPVRHA
LIRLHGEGLVSQHAQGGYRPAVPDPNDIACLYEARRALEIGALWRPEEAGTSHDRGKLDA
LREDWEALRRDPPPADAEFVTTDEDFHIRLAQAAGNEVVADLLRSVNARIRVIRIHDFLS
DDRIEVTIGEHLGILQAVAADDPAGAEKLFRAHLAKSKEIAEERALRAIARMATLD
Download sequence
Identical sequences C7PWM1
gi|256395578|ref|YP_003117142.1| 479433.Caci_6449

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]