SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|226943724|ref|YP_002798797.1| from Azotobacter vinelandii DJ

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|226943724|ref|YP_002798797.1|
Domain Number 1 Region: 363-461
Classification Level Classification E-value
Superfamily Positive stranded ssRNA viruses 0.000000177
Family Tetraviridae-like VP 0.022
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|226943724|ref|YP_002798797.1|
Sequence length 752
Comment general secretion pathway protein D [Azotobacter vinelandii DJ]
Sequence
MTRRTRPAPPARRLPRHSLGPLALSLLLAGCAIDPNPEPLPGPLRPPMRQEAGESTLRAE
AVRGEQAPKIPRFQTTPGQHLQQGPSYVVASADKLGQDLTGEPITLNLNNFPLPAFINEV
FGNRLGLSFGISPELQGKTDLISLRLSEPQTPADLFATARFVLSEYGVAVTEREGVLFFQ
SAQNAPNDSLPLLVSGGALPEVPMSHRPVFQQIPMRVVRSDSMVAWLKDMFAGSSLKVSS
DPLSNAVMLRGPIDLIRQASQAIELFDRPALKGSHSLAISPVYASADELGTALVKVLQAE
GYDVSENPPLGGVVVLKLKELQRLIVFAADPAILATARQWVELLDRQSQEQVENGLFLYQ
VRNTQAAGIASMLGALGYSATIPDTGLNTSNTVTPTGASTGESLATSGPIRSVTGTGANA
RASAPTSIAGNPEQGSVVVDANRNAIIYKGSGQEWLKLRPLLEELDRPVPSVIIDVLLAE
VNLNDREGLGVDWQNITGSLGSKQLIFGTANGIGSSGLNISALNSAGQTKATLNAFYDNN
QAVIRSSPKLMVRSGEEATIEVGNEIPVVTGTTQSTDTDNAPITQTVQYRKTGVLLNIKP
TVQASGVVDLKISQELSESTDTGTGDTLTPIINNRRVETALTLRDGGSVMLAGLISSSKG
KGDNGVPLLGDLPWIGNLFKSQSNSETRTELIVMIIPYVVRDFDEAQDLSRTYREQLSLN
NSDSLERRGDHRLPPAYAPHATETPPAPAHRP
Download sequence
Identical sequences C1DRT4 M9YI48
gi|226943724|ref|YP_002798797.1| gi|482898115|ref|YP_007897656.1| gi|482893636|ref|YP_007892607.1| 322710.Avin_16070 WP_012700237.1.101714 WP_012700237.1.69821 WP_012700237.1.78925 WP_012700237.1.92556

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]