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Domain assignment for gi|125972768|ref|YP_001036678.1| from Clostridium thermocellum ATCC 27405

Domain architecture


Domain assignment details

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Strong hits

Sequence:  gi|125972768|ref|YP_001036678.1|
Domain Number 1 Region: 109-232
Classification Level Classification E-value
Superfamily Galactose-binding domain-like 4.25e-27
Family Family 6 carbohydrate binding module, CBM6 0.011
Further Details:      
 
Domain Number 2 Region: 350-641,734-785
Classification Level Classification E-value
Superfamily Integrin alpha N-terminal domain 1.44e-17
Family Integrin alpha N-terminal domain 0.0069
Further Details:      
 
Domain Number 3 Region: 29-99
Classification Level Classification E-value
Superfamily Type I dockerin domain 3.04e-17
Family Type I dockerin domain 0.00073
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) gi|125972768|ref|YP_001036678.1|
Sequence length 820
Comment carbohydrate-binding family 6 protein [Clostridium thermocellum ATCC 27405]
Sequence
MKKTLVFLTALSLIFTLFISYSLSAGPASTKYGDLNADGKINSTDYNLGKRLILRTISEL
PISNGSVAFDLNGDSKVDSTDLTALKRYLLGVIDKFPVGTDIPSQTQKTRYQAEDAMLYK
AFEETIHAGYDGRSYVNYDNEPGGYIEWNVNVSSSGTYKLIFRYANGSNNNRPMEIRVNS
NLVAGSLDFYPTSAWTVWNDQSIVVTLNAGNNVIRATGIASDGGPNVDYLEVIPTNEPPA
PTPSPTPTVGPTPAGARQMERLDRGLVAVKVNNGVFLSWRMFGTDPSNIAFNLYRNGTKI
NSTPITGATNYVDTGGTTSSTYTVRAVINGQEQEASKPVSVWAQNYLQIPIQPPSSAYEA
NDCSAADLDGDGEYEIVLKWEPNNAKDNSQSGYTDNVYLDAYKLNGTRLWRIDLGRNIRA
GAHYTQFMVYDLDGDGKAEVACKTADGTRDGKGNVIGNPNADYRNSSGYILSGPEYLTVF
DGQTGAAITTVDYDPPRGNVSSWGDNYGNRVDRFLACIAYLDGQRPSLVMCRGYYTRSVL
VAWDFRNGRLTKRWVFDGNNYSGYNGQGNHNLSVADVDGDGRDEIIYGACTIDDNGKGLY
TSGLGHGDALHVGDLNPNRPGLEIWSCFESSGGAALRDARTGEVLFRWHRSSDTGRACAA
DITASSPGAELWAAGSPLFSCTGQNIGTAPSQINFAIWWDGDELRELLDGITISKYGVGT
LFTATGCASNNGTKSTPCLQADLLGDWREEVIFRTSDNRYLRIYTTTATTNRRIYTLMHD
PVYRLGIAWQNVAYNQPPHTSFFIGAGMAEPPKPNIYLVP
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Identical sequences A3DC06
WP_011837785.1.31213 Cth-1006 203119.Cthe_0246 gi|125972768|ref|YP_001036678.1|

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