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Domain assignment for gi|156937006|ref|YP_001434802.1| from Ignicoccus hospitalis KIN4/I

Domain architecture


Domain assignment details

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Strong hits

Sequence:  gi|156937006|ref|YP_001434802.1|
Domain Number 1 Region: 64-155
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 5.55e-20
Family Cold shock DNA-binding domain-like 0.00015
Further Details:      
 
Domain Number 2 Region: 151-230
Classification Level Classification E-value
Superfamily Eukaryotic type KH-domain (KH-domain type I) 1.33e-16
Family Eukaryotic type KH-domain (KH-domain type I) 0.00012
Further Details:      
 
Domain Number 3 Region: 9-63
Classification Level Classification E-value
Superfamily Ribosomal L27 protein-like 0.0000000011
Family ECR1 N-terminal domain-like 0.0052
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) gi|156937006|ref|YP_001434802.1|
Sequence length 239
Comment exosome complex RNA-binding protein Rrp4 [Ignicoccus hospitalis KIN4/I]
Sequence
MNKQSNEVQRKIVMPGDLVVKGNYTINPKSIMYLYKVGDAVYAAVAGMAEITNGTVSLIP
FEGTYIPKPGDLVIGVVENFVVTHWQVDINSPYIGILHVSNLLGRPYNPAKDNLKEYLDI
GDYIIAKVESFDRTKDPILNVQGKGLGRVVEGKIVEIKPSRVPRVIGKKKSMLNVIKGDT
GCEIIVGANGRIWIKCPNKDLEDIVTLAIKLIEREAFATGLTEKVRVLIATEKHERGLL
Download sequence
Identical sequences A8A8Z3
gi|156937006|ref|YP_001434802.1| 453591.Igni_0211 WP_011998247.1.33635

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