SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for jgi|Triha1|517840|estExt_fgenesh1_pm.C_3_t30032 from Trichoderma harzianum CBS 226.95 v1.0

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  jgi|Triha1|517840|estExt_fgenesh1_pm.C_3_t30032
Domain Number 1 Region: 8-157
Classification Level Classification E-value
Superfamily Sm-like ribonucleoproteins 1.03e-21
Family Sm motif of small nuclear ribonucleoproteins, SNRNP 0.00049
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) jgi|Triha1|517840|estExt_fgenesh1_pm.C_3_t30032
Sequence length 214
Sequence
MASNKLGKMAGYINYRMRVTLQDSRQLVGQMLAYDRHMNLVLADTEEFRRIKRKNKTAAP
GGAPVGQTIVQEEKRTLGLVIVRGAHIISLTVESPPPADPSARLGKATTGGIASTLQAGP
GVARPAGRGAAAPISLAGPAAGVGGGAPPPGFPSFPGAPGAPGAPGFGGRGGPPPGFPGQ
FPPPAGFPGAPGFPGAPGFPPGGPPPGFQPPPRR
Download sequence
Identical sequences A0A0F9XGA7 A0A1T3C924
jgi|Triha1|517840|estExt_fgenesh1_pm.C_3_t30032

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]