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  Home > Genomes > Lepisosteus oculatus 76 > ENSLOCP00000012177

Domain assignment for ENSLOCP00000012177 from Lepisosteus oculatus 76

Domain architecture

Domain assignment details

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Strong hits

Sequence:  ENSLOCP00000012177
Domain Number 1 Region: 1729-1838
Classification Level Classification E-value
Superfamily PDZ domain-like 5.13e-29
Family PDZ domain 0.00035
Further Details:      
 
Domain Number 2 Region: 1457-1560
Classification Level Classification E-value
Superfamily PDZ domain-like 3.55e-27
Family PDZ domain 0.054
Further Details:      
 
Domain Number 3 Region: 1225-1315
Classification Level Classification E-value
Superfamily PDZ domain-like 1.58e-24
Family PDZ domain 0.027
Further Details:      
 
Domain Number 4 Region: 352-454
Classification Level Classification E-value
Superfamily PDZ domain-like 2.1e-24
Family PDZ domain 0.0057
Further Details:      
 
Domain Number 5 Region: 236-324
Classification Level Classification E-value
Superfamily PDZ domain-like 2.63e-24
Family PDZ domain 0.01
Further Details:      
 
Domain Number 6 Region: 1055-1153
Classification Level Classification E-value
Superfamily PDZ domain-like 1.45e-21
Family PDZ domain 0.00016
Further Details:      
 
Domain Number 7 Region: 120-224
Classification Level Classification E-value
Superfamily PDZ domain-like 7.62e-21
Family PDZ domain 0.0096
Further Details:      
 
Domain Number 8 Region: 1637-1720
Classification Level Classification E-value
Superfamily PDZ domain-like 2.1e-20
Family PDZ domain 0.0021
Further Details:      
 
Domain Number 9 Region: 1561-1641
Classification Level Classification E-value
Superfamily PDZ domain-like 3.81e-20
Family PDZ domain 0.0051
Further Details:      
 
Domain Number 10 Region: 727-823
Classification Level Classification E-value
Superfamily PDZ domain-like 1.08e-19
Family PDZ domain 0.022
Further Details:      
 
Domain Number 11 Region: 11-69
Classification Level Classification E-value
Superfamily L27 domain 6.67e-18
Family L27 domain 0.00047
Further Details:      
 
Domain Number 12 Region: 570-638
Classification Level Classification E-value
Superfamily PDZ domain-like 2.76e-16
Family PDZ domain 0.019
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSLOCP00000012177   Gene: ENSLOCG00000009943   Transcript: ENSLOCT00000012198
Sequence length 1839
Comment pep:known_by_projection chromosome:LepOcu1:LG10:24784041:25009446:1 gene:ENSLOCG00000009943 transcript:ENSLOCT00000012198 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence 
MLESIPSVSTSERQQVLQALERLQSKLKDRDDRTHSERLGALRDALRSPLLGHILTLQHS
IKQLKEQLNRLPPGTSSDFEFSKKGQLILSASQPVGSDYGSEKPTSPFGNGFSTPSHYAE
EFWKRIEAAAEGREVEHISLPKPVSGGLGFSVVGLKREDVGEHCVFIKQVQPGSIADRDG
RLKENDQVLAINGTPLDQNISYQQATALLQQCAGTMQLVVAKEPARSHGGVRVQTEVEWG
HVEELELVNDGSGLGFGIVGAKATGVVVRTLIPGSVADRDGRLRTGDHILAIGGTDVQGL
SSDQVVKVLQSCGSRVQMVVARDPLGDARPKPPAPAAAPVSALPPIPPHGQGEPDAQQLN
LEGYEIHDVPLQKKEGQSLGISIVEHTGRAGEESPGIFVKTVIPGSAAEQSGQIQVHDKI
VAIDGINVLGFSNREVLEVMKSTGRTVHLTVARKRSSQKHVPVERSLDKVVREPSRVSLR
RSAEIKVKLDAQKGPVFEPTDLMLSDIKPQITSSNDPEPLTLPQDHLRAKWESALGPEYE
VMVVELDPVIEGDAELQKYSKLLPIHTMRLGVELDSFDGHHYISTVAPGGPVAKHGLLRP
EDELLEVNGVQLYGKSRREAVAFLREVPPPFTLVCCRHLVEDGIEASVEEPPESLFPPLR
KQIRHNFSEILSSTRCLKYIMLFCTQLGSSFLQGQVILEEDEWEQMEVLAKRQEEDEDEE
EEEEGELAMWSPEVKVVELEKEDRGLGFSILDYQDPEDLRRSVIVIRSLVPGGVAECNGG
ILPGDRLVFVNDTHLDRCTLPEAVEVLKSVPPGKVHLGICKPLVIKGRASGVPQAWPFSS
ERAEPLVSTVLDRAVPPVPQCFDDETPLLEELVDEPEVYLRSSPFPWRGPGPAGGDTLEL
LQPSGALGRSEMVVDEEEEQQEGILTQEELVDPADLPPPYSRLQEEVFHSPTFSIFIEPS
IEQVRADDLLLGVRKFGIIPLRFSLIHLTRWVAEFNCFFSSFQDAISLSIWNGGREEEES
RGSALLFRNNQVPGSVSSELPEREEGEGEETPAYSHWGPPRRVEVWREPAESLGISIVGG
HTVIKKLKNGEELKGIFIKQVLEESPAGRTKALKTGDKILEVSGMDLQNASHNEAVQAIK
NAGNPVIFTVQSLSATPRPVSVMAPSYSKHKAKSKAMKKSPPTGVPPPMRLPPPYREPGG
DTEDREEKRGRAWGETEKIKQRYGELPGELHIIELEKDRNGLGLSLAGNRDRSCMSIFVV
GISPGGPAFRDGHLRVGDELLEINNQILYGRSHQNASAIIKSAPSKVKIVFIRNEDAINQ
MAVPPFPAPPASVSSNESHDFSGMLTAKEMSQGTEEFAHKKNIPEVSLGKEQTSLKAEAQ
GTEVVLKSLSEGEATSKKVKIYEKDAEAEIKSPRGQLHEQSASTPKPIFAKMAASSVDRT
VVSSAALPPSGSPPDFEYTGRDPATCPIVPGQETVIEISKGRSGLGLSIVGGKDTQLDAI
VIHEVYEEGAAARDGRLWAGDQILEVNGSDLRHASHEDAIAALRQTPPKVRLTVFRDEHQ
YKDEENLDVFSVELQKRAGRGLGLSIVGKRNGTGVFISDVVKGGAADLDGRLMQGDQILS
INREDMRSASQETVAAILKGPTDALGISIAGGKGSPLGDIPIFIAMIQASGVVARTHRLK
VGDRIVSINGQSLDGLAHGEVVNLLKNAFGSISLQVVADTNISAIASQLESMSASSALTS
ASEVPSEEPEPPQPKTITLEKGSEGLGFSIVGGYGSPHGDLPIYVKTVFSKGAAADDGRL
KRGDQILLVNGESLDGVTHEQAVAILKRQRGAVTLAILS
Download sequence
Identical sequences W5MUW8
ENSLOCP00000012177

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.