SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSLOCP00000015372 from Lepisosteus oculatus 76

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSLOCP00000015372
Domain Number 1 Region: 5-90
Classification Level Classification E-value
Superfamily PDZ domain-like 1.31e-21
Family PDZ domain 0.00014
Further Details:      
 
Domain Number 2 Region: 544-608
Classification Level Classification E-value
Superfamily Glucocorticoid receptor-like (DNA-binding domain) 1.47e-18
Family LIM domain 0.0081
Further Details:      
 
Domain Number 3 Region: 485-547
Classification Level Classification E-value
Superfamily Glucocorticoid receptor-like (DNA-binding domain) 1.27e-16
Family LIM domain 0.025
Further Details:      
 
Domain Number 4 Region: 454-483
Classification Level Classification E-value
Superfamily Glucocorticoid receptor-like (DNA-binding domain) 0.00000976
Family LIM domain 0.002
Further Details:      
 
Domain Number 5 Region: 604-628
Classification Level Classification E-value
Superfamily Glucocorticoid receptor-like (DNA-binding domain) 0.0000143
Family LIM domain 0.029
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSLOCP00000015372   Gene: ENSLOCG00000012484   Transcript: ENSLOCT00000015401
Sequence length 635
Comment pep:known_by_projection chromosome:LepOcu1:LG5:35705635:35769038:-1 gene:ENSLOCG00000012484 transcript:ENSLOCT00000015401 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MSNYTVTLSGPAPWGFRLQGGKDFNMPLTISRITPGSKAAQANLNQGDIIIAIDGASTDG
MTHLDAQNKIKCASFNLNLTMQRSKRPAPVPTATPRMDSPMPVIPHQKKDQSLQINGSLS
AKQEINHFSNVSITEAGGPSPTKRLSGPVGKLAGQRGQYNTPIGLYSADTIREMAEAQGG
RRGRVSAVGLLQGTPIEHAPVSTSPAPASLPAASPSQPAAAPQSLAKQVSPSPPAALSPA
LSPAPPTPRRKSMGSHSSYFCSSHEEFPTQSPCLTRDLSCQRPLQQQKKRLGMYFPSHSP
VPLSCSPYSQPRLQQSSIEIPMGPPKPKVISTASIVPSVYPSAPVPFSVSVFASAPAPAQ
APAAPSPSSRPPWVTDDSFAQKFVPGKSTTTVTKHIHPLPQAAPPAPAYIPNPVAPSPAG
PSPAFNLSPAPFPAPAPSAARGVAQRAERFPAGSRTPMCACCNSIIRGPFLVALGRSWHP
EEFNCHYCHTSLADVCFVEEQSNVYCESCYGEFFAPTCARCNTKVMGEVMHALRQTWHTT
CFVCAACGKPFGNSLFHMEDGEPYCEKDYIALFSTKCHGCDFPVEAGDKFIEALGHTWHD
TCFVCAVCHINLEGQPFYSKKDKPLCKKHAHAINV
Download sequence
Identical sequences W5N413
ENSLOCP00000015372

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]