SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSLOCP00000015376 from Lepisosteus oculatus 76

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSLOCP00000015376
Domain Number 1 Region: 5-90
Classification Level Classification E-value
Superfamily PDZ domain-like 1.21e-21
Family PDZ domain 0.00014
Further Details:      
 
Domain Number 2 Region: 499-563
Classification Level Classification E-value
Superfamily Glucocorticoid receptor-like (DNA-binding domain) 1.43e-18
Family LIM domain 0.0081
Further Details:      
 
Domain Number 3 Region: 440-502
Classification Level Classification E-value
Superfamily Glucocorticoid receptor-like (DNA-binding domain) 1.27e-16
Family LIM domain 0.025
Further Details:      
 
Domain Number 4 Region: 409-438
Classification Level Classification E-value
Superfamily Glucocorticoid receptor-like (DNA-binding domain) 0.00000951
Family LIM domain 0.002
Further Details:      
 
Domain Number 5 Region: 559-583
Classification Level Classification E-value
Superfamily Glucocorticoid receptor-like (DNA-binding domain) 0.0000137
Family LIM domain 0.029
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSLOCP00000015376   Gene: ENSLOCG00000012484   Transcript: ENSLOCT00000015405
Sequence length 590
Comment pep:known_by_projection chromosome:LepOcu1:LG5:35705635:35769038:-1 gene:ENSLOCG00000012484 transcript:ENSLOCT00000015405 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MSNYTVTLSGPAPWGFRLQGGKDFNMPLTISRITPGSKAAQANLNQGDIIIAIDGASTDG
MTHLDAQNKIKCASFNLNLTMQRSKRPAPVPTATPRMDSPMPVIPHQKCRTCTTSPKPLG
VTNGTNSYFYTGGPSPTKRLSGPVGKLAGQRGQYNTPIGLYSADTIREMAEAQGGRRGNR
GGSSSQEYLNQSSGSCCFPGSVCCVCTSTPIEHAPVSTSPAPASLPAASPSQPAAAPQSL
AKQVSPSPPAALSPALSPAPPTPRRPRLQQSSIEIPMGPPKPKVISTASIVPSVYPSAPV
QKVYPGPQARAPAPAQAPAAPSPSSRPPWVTDDSFAQKFVPGKSTTTVTKHIHPLPQAAP
PAPAYIPNPAPSPAGPSPAFNLSPAPFPAPAPSAARGVAQRAERFPAGSRTPMCACCNSI
IRGPFLVALGRSWHPEEFNCHYCHTSLADVCFVEEQSNVYCESCYGEFFAPTCARCNTKV
MGEVMHALRQTWHTTCFVCAACGKPFGNSLFHMEDGEPYCEKDYIALFSTKCHGCDFPVE
AGDKFIEALGHTWHDTCFVCAVCHINLEGQPFYSKKDKPLCKKHAHAINV
Download sequence
Identical sequences W5N417
ENSLOCP00000015376

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]