SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSLOCP00000015446 from Lepisosteus oculatus 76

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSLOCP00000015446
Domain Number 1 Region: 7-89
Classification Level Classification E-value
Superfamily PDZ domain-like 8.81e-19
Family PDZ domain 0.007
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSLOCP00000015446   Gene: ENSLOCG00000012536   Transcript: ENSLOCT00000015475
Sequence length 1275
Comment pep:known_by_projection chromosome:LepOcu1:LG4:58428059:58478978:1 gene:ENSLOCG00000012536 transcript:ENSLOCT00000015475 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MVTGDYICITVRGGAPWGFVLQGGKEFQLPLQISEVDEGSKAASAGLCKGDEVVSLNGEP
CADWALSEAMALIDGSADTLQVLVKRCRCGVHELSDPSSEKMYFDESIPNEGLASTTLQI
WPSRGAPPPRELYISESQDEAYYGETESDTDLSCATRQARAKSPNREKDHLRERSSLETS
CRGAKQGAVTPGTVVELQLSFSDHNQGDPSVTPGSNPWGEKHSTLGGLQKDRSLDISLGG
SKTELLHTTAVQSFCLPRNRGDITDQGQGREPVSSSSSLGQVEVTLEHPREGKRWGEIVV
CRTESSLSGCVDSQEEGGHIEAPPASVSFGISSEGAEQAEEWDSESEWDHSRPNKHRPRH
SRLRRSESLSEKQVKEAKSKCKRIALLLTAAPNPNNKGVLMFKKHRQRAKKFTLVSYGTG
EQEPEEEADEEEEEGDEDDAIEVTLLATSESEIDEDFFTDARGRTRIVTFDWDTGLLEIE
KKLDNQEEMERLPETKGKGALMFAKRRQRVDQITAEQEEMRRKGIPVEDPHEPATTESAQ
VTQHTSHQENFYTQSKAENQTHVSQGYIDVNVQKQQQQHHQQQYSLSQSVNGVVHHQTND
MQKSSVTNRTARPFTGVQNRMAAPFLPSKSVASPVSDQPSYSDNKYRVVLPPVPVNAQPQ
VWSPTGFGEQIASRDERISVPAIKTGILQETRKKNTAKPMFTFKEPPKVSPNPALLNLLN
KGDKRHPLTGFESGPEEDYLSLGAEACNFLQSPAIKQKTPPPVAPKPTINPASPPWSPAP
ATANQTPPSQPPLNEAPTPALNPAQAPPQQHPPSPVNMWSQPQPAPNAFVSLPAPRSVAS
AYTHTSKTPPSTPIGNVASAGGMGPAFEMPALRGRGAELFAKRQSRMEKFVVDSSTVQAS
KPRSISPTPSLPSSWKYSSNIRAPPPLAYNPIQSPSYPPGAIKSQPQSQTGPTGKTKTKG
KTTTKVLHALDVMKHQPYQLNSALFTYGPVSDPKGPPPKAFSAPPKQPPEYDAVAPMKPA
GQVNATYSVSHHQPYMARESSHGLPVSSPVTHDGSFSPAANTYVGPTTGSSLFIAPRPKF
SAKKSGVAAKGLGRSYSLSLPRRMPTLPGYDSPVSSPLFQPAKGPLERQTSWLDRGSKPP
TPWEAAARSPLGLVDEAFSFQNIQKSIASNVISAAQRKTLPEPPAEWKERVSYEPSLQSR
NRFYGQLGSMSPSRSIASAPASSSLYGFPFKYSYQPQKSVTESNIMDIRSDYGAYGRSIN
TPNYNVYPRAWKPQA
Download sequence
Identical sequences W5N487
ENSLOCP00000015446

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]