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  Home > Genomes > Lepisosteus oculatus 76 > ENSLOCP00000016332

Domain assignment for ENSLOCP00000016332 from Lepisosteus oculatus 76

Domain architecture

Domain assignment details

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Strong hits

Sequence:  ENSLOCP00000016332
Domain Number 1 Region: 2017-2122
Classification Level Classification E-value
Superfamily PDZ domain-like 2.63e-28
Family PDZ domain 0.00012
Further Details:      
 
Domain Number 2 Region: 1659-1767
Classification Level Classification E-value
Superfamily PDZ domain-like 6.31e-28
Family PDZ domain 0.022
Further Details:      
 
Domain Number 3 Region: 336-443
Classification Level Classification E-value
Superfamily PDZ domain-like 5.26e-26
Family PDZ domain 0.0016
Further Details:      
 
Domain Number 4 Region: 1140-1242
Classification Level Classification E-value
Superfamily PDZ domain-like 1.45e-24
Family PDZ domain 0.0000328
Further Details:      
 
Domain Number 5 Region: 221-322
Classification Level Classification E-value
Superfamily PDZ domain-like 1.84e-24
Family PDZ domain 0.011
Further Details:      
 
Domain Number 6 Region: 1774-1861
Classification Level Classification E-value
Superfamily PDZ domain-like 1.97e-24
Family PDZ domain 0.0076
Further Details:      
 
Domain Number 7 Region: 1913-2003
Classification Level Classification E-value
Superfamily PDZ domain-like 2.23e-23
Family PDZ domain 0.0023
Further Details:      
 
Domain Number 8 Region: 111-216
Classification Level Classification E-value
Superfamily PDZ domain-like 2.76e-23
Family PDZ domain 0.0099
Further Details:      
 
Domain Number 9 Region: 668-764
Classification Level Classification E-value
Superfamily PDZ domain-like 2.23e-21
Family PDZ domain 0.0083
Further Details:      
 
Domain Number 10 Region: 1516-1610
Classification Level Classification E-value
Superfamily PDZ domain-like 3.81e-20
Family PDZ domain 0.0069
Further Details:      
 
Domain Number 11 Region: 1382-1485
Classification Level Classification E-value
Superfamily PDZ domain-like 9.19e-20
Family PDZ domain 0.031
Further Details:      
 
Domain Number 12 Region: 530-614
Classification Level Classification E-value
Superfamily PDZ domain-like 2.63e-19
Family PDZ domain 0.037
Further Details:      
 
Domain Number 13 Region: 5-62
Classification Level Classification E-value
Superfamily L27 domain 3.45e-19
Family L27 domain 0.00066
Further Details:      
 
Domain Number 14 Region: 988-1064
Classification Level Classification E-value
Superfamily PDZ domain-like 4.6e-18
Family PDZ domain 0.0083
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSLOCP00000016332   Gene: ENSLOCG00000013247   Transcript: ENSLOCT00000016362
Sequence length 2123
Comment pep:known_by_projection chromosome:LepOcu1:LG4:64762821:64818763:1 gene:ENSLOCG00000013247 transcript:ENSLOCT00000016362 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence 
VLLNVDTQRALQAVERLQAKLKERGDVLTEEKLNMLKTVLQSPLFQQILTLQTSVQQLKE
QVGLSNIRGKDINSSRIAQQNGNYGIQRDTPALSITPQINGKPSVDEFEHLIRSMAQGRY
VMHIELVKPISGGLGFSVVGLKSENRGELGIFVQEIQPGSVTHCDGKLKEGDQILSINGQ
PLDQTITHQEAISILQKASEKVNLIVARGPIPQLASPVVSRTPSAASTLSAHSSATHWQH
METIELVNDGTGLGFGIVGGKSTGVIVKTILQGGVADQDGRLRSGDHILKIGDTDLHGMG
SEQVAQVLRQCGNRVKLVITRGAIEDSSAPPAPVLPPVVELQCEMTDYEEDDIDAFDVEL
TKNAQGLGITIAGYVGDKTSEPSGIFVKSITKGSAVEQDGRIHIGDQIIAVDGTNIQGFT
NQQAVEVLRHTGQTVHLKLMRRGFRPEEPLISEHKPLPKVVKELAVDRMDSDITIEDSDR
KQKPYPSICGSSSITPTEDEQIQSKEGTLLTAVEEEELKKKWQSLLGPSNEVVVAQVEKF
SESSGLGISLEASSGHHYIRSVLPEGPVGRSGRLFSGDELLEVNGISLIGENHKEVISIL
KELPVFVTLVCCRPALLLDSDSDIGGMQSMFYYTNYIMVHLDLGDCVGSSETDDIVKENV
TEETLGSSLAMWETEIQDIELEKGDMGLGFSILDYQDPVDPEKTVIVIRSLVPDGVAEVD
GRLLPGDRLMFVNDTNLENASLEDAVQALKGAPVGKVRIGVAKPLPAVVLESHSILPTPE
EGCSSAKDDSIFYTAQQFEDEEQADAAVFHAELAMIDSNEADLTDEKTFDSQYPGEEDDT
FQESMLALHGSTCSVDLDYQLSMHSSTPKQTYSMNEFDVCPSTEFADEAEPFFPEEKRIT
LFQPWKATSSALPFGATNKTPSPEQHINLMETDCVMPEVVQSSHQEGFVPVKHHKYILHI
FRSSGLERNEDMEDQGLVENIDNEMFSSGSSFERTITVVKGNSSLGMTVSAVKDGSGMII
RSIIHGGSISRDGRLAVGDCILAINGEPTTNLTNAQARAMLRRHSLIGPDIRSSCAPADD
QSPFYVITYVPSEYLEEYRISLVHLKDETTSGAPSTWFSAEAGELPEREDGEGEESEMQS
SAYSNWNQPRKVELFREAGKSLGISIVGGRGMGSRLNNGEVMRGIFIKHILEDSPAGRNG
TLKTGDRIVEVDGIDLRDASHEQAVEAIRKAGNPVVFMVQSIVHRPRKPPLPFLLPKPIP
EPAFSSTNPFVASFQPSLFQYMHQTMTTESNEEKCIPTSNGSESHSRLFLRLSPTNPFAP
TPFKVCGTLCVVVASPSIVPLVSSLPVVPPIGETETDTLMEPENLALPMDSPDEEEDEFG
YSWKKIIQRYGSLPGVLHMIELEKGKTGLGLSLAGNKDRSRMSVFVVGIDPSGAAGRDGR
ILVGDELLEQQINGQILYGRSHQNASSIIKSAPSKVKIIFIRNTDALNQMAAGPVKECGD
MLESQTELDMCAVSPSAIDFDLFKNIQHIILPKDQGGLGIAISEEDTSGGVVIKSLTDNG
AAGKDGRIKVNDKILAVDDETVVGCPVEKVINLLKRSKSTVKLTICSEDLSSLSSCVNLP
ESASDIITLDQGCLHFCSLRSTTSSSADKSSSDTAFDASRSSTPATMASDPVTCPIIPGC
ETTIDISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAASKDGRLWAGDQILEVNGIDLR
NATHDEAINVLRQTPQKVRLTVYRDEAQYKEDDMWDVFFLELQKKPGEGLGLSIVGKRND
TGVFVSDIVKGGIADTDGRLMQGDQILSVNGEDVRSATQESVAALLKCCIGTITLEVGRY
KAGPFHSERRLSHSSQVSETGSFGASSCLSGSGSGLGDNFESRRKSLDCSDFQELRTVEF
TKGPLDSLGISIAGGVGSPLGDIPIFIAMMHPTGLAAQTQKLKIGDRIVSICGTSTEGMS
HSQAVTLLKNASGTIGLQVCAGGDASVTGSSHEQTASLSLSGLTASSIFHDDLGPPQYKT
ITLDRGHDGLGFSIVGGFGSPHGDLPIYVKTVFVKGAASEDGRLKRGDQIIAVNGQSLEG
VTHEEAVAILKRTKGTVNLTVLS
Download sequence
Identical sequences W5N6S3
ENSLOCP00000016332

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]
Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.