SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSLOCP00000020887 from Lepisosteus oculatus 76

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSLOCP00000020887
Domain Number 1 Region: 5-259
Classification Level Classification E-value
Superfamily L domain-like 1.03e-49
Family Leucine rich effector protein YopM 0.029
Further Details:      
 
Domain Number 2 Region: 189-391
Classification Level Classification E-value
Superfamily L domain-like 1.77e-37
Family Leucine rich effector protein YopM 0.074
Further Details:      
 
Domain Number 3 Region: 710-795
Classification Level Classification E-value
Superfamily PDZ domain-like 8.81e-24
Family PDZ domain 0.00041
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSLOCP00000020887   Gene: ENSLOCG00000016898   Transcript: ENSLOCT00000020923
Sequence length 795
Comment pep:known_by_projection chromosome:LepOcu1:LG16:18713519:18765094:1 gene:ENSLOCG00000016898 transcript:ENSLOCT00000020923 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MFHCIPLWRCNRHVESLDKRHCSLLYVPDEIYRYSRSLEELLLDANQLRDLPKPFFQLVK
LRKLGLSDNEIQRLPPEIANFMQLVELDVSRNDIMEIPESISYCKALQVADFSGNPLTRL
PESFPELRNLTCLSINDISLQALPDNIGNLCNLVSLELRENLLTYLPESLSQLHRLEELD
LGNNELYSLPETIGCLLSLKDLWLDGNQLSELPAEIGSMRSLLCLDVSENKLERLPEEIR
GLSSLTDLLASQNLIDVLPDGIGKLKQLSILKVDQNRLVQLPDSIGECENLTELVLTENQ
LVNLPRSIGKLKKLSNFNCDRNRLIALPKEIGGCCSLNVLCVRENRLTRIPSEISQATEL
HVFDVSGNRLVCLPMSLTTLKLKALWLSENQSQPLLTFQTDVDPESREKVLTCVLLPQQP
SPSVEEAHFQKQSTPICLRISSGKSLLVQISQTNSSLEEKDDEDDEKGTLLRRATPHPGE
LKTMKKTAENLRNDMNAAKGLDSNKNEFSDGIRVSSQSRVDGQKIKLLFTMLDYEPDVVP
HTVDDDDGWVACMKKGTSDLKEKSVYTEAILSDSSLSVTGPEATAPVLSRRRRKFQIRLK
NEYYIHIKPPVCSVRIIKGFQCLRTMLSLSGDQCFSDPEYGPKRHRHHKGDHRENRRIPK
PRAFPGGLGNRRLPSSVPACNAAAEKNGQGGFPERGPADKPTSKVPLKIKVCSQRGSLGI
SIAGGKGSAPYNENDEGIFISRVSKGGPAERAGARVGDRLLEVNGVNMQTVSHHEAVSTL
RNAGSCIKMTVLRQR
Download sequence
Identical sequences W5NJS8
ENSLOCP00000020887

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]