SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSLOCP00000003451 from Lepisosteus oculatus 76

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSLOCP00000003451
Domain Number 1 Region: 119-259
Classification Level Classification E-value
Superfamily "Winged helix" DNA-binding domain 1.14e-27
Family DEP domain 0.007
Further Details:      
 
Domain Number 2 Region: 30-116
Classification Level Classification E-value
Superfamily "Winged helix" DNA-binding domain 1.47e-26
Family DEP domain 0.0024
Further Details:      
 
Domain Number 3 Region: 320-404
Classification Level Classification E-value
Superfamily PDZ domain-like 4.21e-16
Family PDZ domain 0.013
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSLOCP00000003451   Gene: ENSLOCG00000002918   Transcript: ENSLOCT00000003458
Sequence length 417
Comment pep:known_by_projection chromosome:LepOcu1:LG18:6471629:6482890:-1 gene:ENSLOCG00000002918 transcript:ENSLOCT00000003458 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MENVGNYVKKKAAERQYKAEVMIAGEQLRLRLHDGKLIKDRRCYLRTYPNCFVAKEAIDW
LIAHKEAPDRETAVRLMQHLMAHDIVHHVCDRHSEYKDAKLLYRFRKDDGTSPFNTEVKV
FMRGQSLYERLVAGKDSIMKEHEEKGVKYQRAFPGFEMIDWLLHNGEIPNRREGVDLCRT
LLDHGIVQHVALRHHFFDSGLLYQFCINFRRRRRLAELLSESENRGAPLGQEEASDSPFT
LRKTAPEEGNTSFLSVQPNKEIKLVSAVRRSSTTSLSGGAGGYFSIPPSFNNAAPVKCNP
KSVLKKKVTIEELMDAGAPYMRKSITIVGDAVGWGFVVRGESPCHVQAVDPGSPAAAAGI
KAGQFVFQVNGVCVLDLDYKTLSRLIMTGPRILVVEVMESLEFYTTQFRNNHKTLNL
Download sequence
Identical sequences W5M4Z3
ENSLOCP00000003451

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]