SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for ENSLOCP00000021190 from Lepisosteus oculatus 76

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  ENSLOCP00000021190
Domain Number 1 Region: 262-361
Classification Level Classification E-value
Superfamily PDZ domain-like 2.63e-24
Family PDZ domain 0.0091
Further Details:      
 
Weak hits

Sequence:  ENSLOCP00000021190
Domain Number - Region: 87-178
Classification Level Classification E-value
Superfamily Myosin rod fragments 0.068
Family Myosin rod fragments 0.016
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Protein: ENSLOCP00000021190   Gene: ENSLOCG00000017146   Transcript: ENSLOCT00000021226
Sequence length 444
Comment pep:known_by_projection chromosome:LepOcu1:LG1:59848067:59873746:-1 gene:ENSLOCG00000017146 transcript:ENSLOCT00000021226 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence
MSATAGGVSPAPQGSALSGPGSGMSMFRWLEVLEKEFDKAFVDVDLLLGEIDPDQADITY
EGRQKMTTLSSCFAQLCHKAQTIFQLNHKLEAQLVDLKSELTDVQAEKAVIEKEVHDQLL
QLHAIQLQLHSKTGQNVDSGSIKAKLEKELEANKKEKVKEAKLEAEVRLQKKENEALRRH
IAVLQAEVYGARLAAKYLDKELAGRVQQIQLLGRDMKGPAHDKLWNQLEAEIHLHRHKTV
IRACRGRNDPKKPLPSPTGHDTETLKKTQGVGPIRKVLLSKEDHEGLGISITGGKEHGVP
ILISEIHPTQPAERCGGLHVGDAILAVNGINLRDAKHKEAVTILSQQRGEIEFEVVYVAP
EVDSDDENVEYEDDSGHRYRLYLDELEETSAAKRSSSSGDTGSLQALEKKSVSEGVENGD
LGISNETASEETGPKTAESADSSS
Download sequence
Identical sequences W5NKN1
ENSLOCP00000021190 XP_015212001.1.81211

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]