SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|158339300|ref|YP_001520477.1| from Acaryochloris marina MBIC11017

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|158339300|ref|YP_001520477.1|
Domain Number 1 Region: 93-432
Classification Level Classification E-value
Superfamily DNA/RNA polymerases 5.93e-43
Family Reverse transcriptase 0.086
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|158339300|ref|YP_001520477.1|
Sequence length 576
Comment RNA-directed DNA polymerase [Acaryochloris marina MBIC11017]
Sequence
MSKARVKPMMEWSAIPWPKLERKVFKLQKRIFRARQRGDVKVVHRLQKTLMRSWSAKCLS
VRRVTQDNQGKKTAGVDGVKSLSPEARLPLVGQLKLGSKAPPTRRVWIPKPGKDEQRPLG
IPTLYERARMTLVKLALEPEWEAVFEPNSYGSRPGRSCHDAIEQIFAAIKQKAKYVLDAD
IAQCFDRINHEALLKKLKTFPTLRRQIKTWLKAGVIDGHQFLQTSEGAPQGGTISPLLAN
VALHGLEYRIKQAFPIRKIADGNKRKRIATPDVIRYCDDFVILHEDLSVVQRCQSLVHEW
LKDMGLELKPSKTHISHTLKRYEAENPGFDFLGFSVRQFPVGQHQSGRLCGTLLGFKTII
TPSRKKQKVHYNRLVSIINAHKAAPQAALIRHLNPVIRGWTRYYSTMASKETFSRLDHLL
YQKLQTWANHRHPGKSRKWVVNKYWQTVGGDKWVFATRVTKSRTEKLLKHRQTPIIRHVK
VKGDASPYNGNLVYWSSRTGKHPEAPKRVSMLLKKQKGKCAQCGMFFREEDLLEVDHILP
TSMGGLDVYKNLQLLHRHCHYVKTAKEKSSQAKWYV
Download sequence
Identical sequences A8ZKQ7
329726.AM1_6226 329726.AM1_A0256 329726.AM1_B0334 329726.AM1_F0004 329726.AM1_F0061 329726.AM1_F0191 gi|158339518|ref|YP_001520907.1|NC_009926 gi|158340197|ref|YP_001521367.1|NC_009927 gi|158341143|ref|YP_001522494.1|NC_009931 gi|158341270|ref|YP_001522366.1|NC_009931 gi|158341326|ref|YP_001522310.1|NC_009931 gi|158339300|ref|YP_001520477.1| gi|158339518|ref|YP_001520907.1| gi|158340197|ref|YP_001521367.1| gi|158341143|ref|YP_001522494.1| gi|158341270|ref|YP_001522366.1| gi|158341326|ref|YP_001522310.1| WP_012166345.1.67183

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]