SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|291299222|ref|YP_003510500.1| from Stackebrandtia nassauensis DSM 44728

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|291299222|ref|YP_003510500.1|
Domain Number 1 Region: 80-205
Classification Level Classification E-value
Superfamily GntR ligand-binding domain-like 1.1e-22
Family GntR ligand-binding domain-like 0.016
Further Details:      
 
Domain Number 2 Region: 11-103
Classification Level Classification E-value
Superfamily "Winged helix" DNA-binding domain 5.13e-18
Family GntR-like transcriptional regulators 0.0097
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|291299222|ref|YP_003510500.1|
Sequence length 212
Comment GntR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728]
Sequence
MSSMPGSEGFEPESERVTRQLRDDILDGVRAPGSRLVERELGAELGVSRLPIRDALKTLV
GEGLVVQRPRTWAVVREFTPSDIADLGEVRSALEVLAFRLAAERRSKAGLDRLRADLDAE
LAAARDGDAVAARRAAADFHQTVVSLAANELLSELEQTLRSRMRWLLGQHDDLLGVANEH
EELYAAVAQRDAARAEELAVRHAANDRWRRPR
Download sequence
Identical sequences D3PXE4
gi|291299222|ref|YP_003510500.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]