SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for Achn227961 from Actinidia chinensis Hongyang

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  Achn227961
Domain Number 1 Region: 380-447,550-608
Classification Level Classification E-value
Superfamily RNA-binding domain, RBD 0.000000000127
Family Canonical RBD 0.012
Further Details:      
 
Domain Number 2 Region: 488-524
Classification Level Classification E-value
Superfamily Ran binding protein zinc finger-like 0.0000000377
Family Ran binding protein zinc finger-like 0.0024
Further Details:      
 
Weak hits

Sequence:  Achn227961
Domain Number - Region: 693-736
Classification Level Classification E-value
Superfamily alpha-D-mannose-specific plant lectins 0.0154
Family alpha-D-mannose-specific plant lectins 0.01
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Achn227961
Sequence length 1756
Sequence
MNSGQQRTQTIATQDIHHLRESELLNSRQQRTQTIATLYRSLTRKRVIEICVAVAERHRL
ATEKGDQVVAGHGDRRGDGDDGEEPQELGPRWEQVGRKGFQSSTPESSERSSRALQGALE
GYGAVHEPNFRVGGSFDDRRYINERLPRDNIYSRNAFHRDVLEREKYQQPPPAVGLWPQT
RRRSYEEEYSIERDSKRHEMPYADSYHERDAFHESDKYQEIDTFQEYDEFRDGYRNVDNY
HDHGYDRPARYGERDRDDYAYRSRSSHQSREDSRERDYDYGRRSASDYDRGSRRESSWRS
RESRDRDRDKRCLSRERDRSPHRKNERSRSWEQNDQPRSRSPRDRSHGRSYREDSYDDDQ
QERSEKGRDRERQRDHYSVSEWGPLRHIRVIKERNSGISRGFAFIDFPFVVSTKYILSIF
GSSFYDWSMCGLIVVKQGAAHAMMDKLGDDGLVVDDRNLFFEYSSKPTWGAGGPSYGPDN
ALKSGHTNYKSINVPSDWMCTSCDCINFARRTSCFQCNEPRTDDAPPADMASSNPTPMGK
KGEAVGSSSGPTHVLVVRGLDENADEEMLRYEFSKHAPIKVKDATKALEATNGTILEKNG
QILRVAYAKSIMGSGSGPSGSSQSSSLAAAAIEAAAFSQQYDAVGWAPKEYNPDDKQSTG
GQEQGGGGVAGPMNASAPQSGFVWDEASGYYYDSASGFYYDGNTGLYYDGNNGIWYSYDH
QTRQYVPCSDQNDNKTSRKQTEPSKPSDGSNNRKIVISAPAATITSDEKASSLPDAVQAA
ANAAIAAEKKEKERLKEIKLASKSSILANKKKMSNVLTKWKQRSHEGQAPRVAIDDNQLS
ASVEDRSNSVGLSTKSRYKMESVTLKENVTMSSGFTATAAQSVRLEAEDKPRPVNNSSGG
ALMGVIRGSGRGVVKSDTSYSGSLAGASFSSSAAAYTAGSSNADVPTTATPFRTDASALG
SYTPPVAAGSVKRRFSEMPLQSASTHKEQPQTTYRDRAAERRSLYGSSSSTGDNVSDMDS
NRDPAFKRGLVDSMPFPPGVGGGRGSGDATVQSYEVITPDKAIDESNVGNRMLRNMGWQE
GLGLGKDGSGMIEPVQAQAVEKRAGLGSQQKKKVDPGLECDGGGKCHVGFRCGEKDIVVV
QWWWGVPCQFPWCRRKGSNGVEEARKVQEGTELARLVIGEAVEAVENHKPRRDSTWKSVD
FVIENRVSISNQGWRAKGGKQEQKMVAATSSASGSLKEYLKRYESKNEEEKKKKKKKKRA
KPDALGVLVVDEDPVWQKPVQLDEDENDDSADEEKPLVDEDIEVKRMKRLEQLRLRRPFG
AISEDGSGWVPVSDTLTPLNSNEQNSDLSPPRKRRIRNDTSSPEPDLKSSRGGREVTDLS
PPRHVRRRHPTPSPETETKSSHSLGLGPKHGNSNNQSSDISPPRKQRARYETLSPEPNLR
SLKSEREVTDLSPVRRRQHLYSTSSPETEMNDPDFSPRQESSDYGGKNSEISESRDISPP
RRVRRSSLHQDVSHVSQRADLSPPRKGLSSPKNVRKESSSLKEQPKTGLITGQDIKEENA
RTKKTDWARFKYMDPSVSGQGAEPVYRDKATGARISKDELMKLTKKDEKPKEIKLEWGKG
LAQKREAETKQLELELEKDKPFARTSISFEFLWSILFDELYVKLLDLMRKNSEHVLPDLG
ENEKMKESGFIIPQDIPSHSWLKRGLDAAPNRYGIKPGRHWDGVDRSNGFEKQMFKRTNE
KQATEREAYLWSVSDM
Download sequence
Identical sequences Achn227961

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]