SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|427739389|ref|YP_007058933.1| from Rivularia sp. PCC 7116

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|427739389|ref|YP_007058933.1|
Domain Number 1 Region: 4-227
Classification Level Classification E-value
Superfamily Pectin lyase-like 5.29e-29
Family Pectin methylesterase 0.06
Further Details:      
 
Domain Number 2 Region: 237-491
Classification Level Classification E-value
Superfamily Pectin lyase-like 1.15e-22
Family Pectate transeliminase 0.086
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) gi|427739389|ref|YP_007058933.1|
Sequence length 867
Comment hypothetical protein Riv7116_6028 [Rivularia sp. PCC 7116]
Sequence
MAIITVTSTADSGEGTLREAILNANSGDTVRFDSALANKKITLTSGQLDIDKDLSIDGAD
AENFTISGNKSSRVFFVGRGKDFTLKNLTVSDAKAVSGKVKDNKAELRGGGVFADDYATL
TIDNVEFKDNVADRGAGIYLDYRSQGTVLNSSFDNNDGTPANSGFSAGAIAAQQTQGLTV
ENSRFTNNKGITGGAIYSLLGPLTVENSVFLKNSAKDGGGAIFTDGASPGGPRGSEPGTI
AIRNSQFEGNEAAGHGGGLFLFSYKQDKVFVEDSTVINNSLSKSSKGIALGGGIRGGLGE
LTIRNTTIADNTSEMQGGGLWYDGPNPLTIENTTLSGNRAVSDDEETFDAGGGIFINPPS
SAPISISNSTIVDNTAGDGAGALWFSGKNEITLSNSIVANNSSNNGTQTSFQLIDGGGNI
EFSEPDGRGRVVEGSQIVDPKLDSLQTINGSLVRPLKSNSPAIDAGTSTSIKTDQRGVVR
DSSPDVGAFEFTSNPSNSQSPNSPEPESESPPTVLNNEPLRYEAEELTLNGYQVETVEGS
GASGGKHISLKGTRGNKGFATGTFNGEAGTYQVEVGYYDENDGQSRAKVTVEEETTSFIF
NQDLPDGWAKPAAKTSRIAIEKVQLQSGDTFKIEGNSNQGEFARFDYIEFSPIEDVEALE
LNSNSLTPQSPNITEPQSSTENDSLVSEVSEPVINGIVNLRNVDFDKDDRIDQKVSLILD
DINSTAFYSNSGGFYEVLDLDGSVVDKVTNQLILPGEKGYETAALNQRITELEFDADNAN
LTTKVDGGIILAPYLITNGTPQEFLDKNPTNNMNGNALNAYFGFGNANPDGIEHLKSLDN
GFAFEDMYGGGDKDFSDLTFTVTVESA
Download sequence
Identical sequences K9RLJ1
gi|427739389|ref|YP_007058933.1| WP_015121938.1.44015

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]